Ravi Allada - Publications

Affiliations: 
Northwestern University, Evanston, IL 
Area:
Circadian rhythms
Website:
http://www.northwestern.edu/neurobiology/faculty/allada.html

61 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Xu F, Kula-Eversole E, Iwanaszko M, Hutchison AL, Dinner A, Allada R. Circadian Clocks Function in Concert with Heat Shock Organizing Protein to Modulate Mutant Huntingtin Aggregation and Toxicity. Cell Reports. 27: 59-70.e4. PMID 30943415 DOI: 10.1016/j.celrep.2019.03.015  0.64
2019 Braun R, Kath WL, Iwanaszko M, Kula-Eversole E, Abbott SM, Reid KJ, Zee PC, Allada R. Reply to Laing et al.: Accurate prediction of circadian time across platforms. Proceedings of the National Academy of Sciences of the United States of America. 116: 5206-5208. PMID 30872489 DOI: 10.1073/pnas.1819173116  0.64
2018 Braun R, Kath WL, Iwanaszko M, Kula-Eversole E, Abbott SM, Reid KJ, Zee PC, Allada R. Universal method for robust detection of circadian state from gene expression. Proceedings of the National Academy of Sciences of the United States of America. PMID 30201705 DOI: 10.1073/pnas.1800314115  0.64
2017 Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, et al. Guidelines for Genome-Scale Analysis of Biological Rhythms. Journal of Biological Rhythms. 748730417728663. PMID 29098954 DOI: 10.1177/0748730417728663  0.68
2016 Flourakis M, Allada R. And the beat goes on: from clock to behavior. Nature Neuroscience. 19: 529-30. PMID 27021942 DOI: 10.1038/nn.4278  0.64
2015 Andreani TS, Itoh TQ, Yildirim E, Hwangbo DS, Allada R. Genetics of Circadian Rhythms. Sleep Medicine Clinics. 10: 413-21. PMID 26568119 DOI: 10.1016/j.jsmc.2015.08.007  1
2015 Flourakis M, Kula-Eversole E, Hutchison AL, Han TH, Aranda K, Moose DL, White KP, Dinner AR, Lear BC, Ren D, Diekman CO, Raman IM, Allada R. A Conserved Bicycle Model for Circadian Clock Control of Membrane Excitability. Cell. 162: 836-48. PMID 26276633 DOI: 10.1016/j.cell.2015.07.036  1
2015 Jiang P, Scarpa JR, Fitzpatrick K, Losic B, Gao VD, Hao K, Summa KC, Yang HS, Zhang B, Allada R, Vitaterna MH, Turek FW, Kasarskis A. A systems approach identifies networks and genes linking sleep and stress: implications for neuropsychiatric disorders. Cell Reports. 11: 835-48. PMID 25921536 DOI: 10.1016/j.celrep.2015.04.003  1
2015 Hutchison AL, Maienschein-Cline M, Chiang AH, Tabei SM, Gudjonson H, Bahroos N, Allada R, Dinner AR. Improved statistical methods enable greater sensitivity in rhythm detection for genome-wide data. Plos Computational Biology. 11: e1004094. PMID 25793520 DOI: 10.1371/journal.pcbi.1004094  1
2015 Flourakis M, Allada R. Patch-clamp electrophysiology in Drosophila circadian pacemaker neurons. Methods in Enzymology. 552: 23-44. PMID 25707271 DOI: 10.1016/bs.mie.2014.10.005  1
2014 van Alphen B, Allada R. Knock, knock to reset the clock: mechanosensation and circadian rhythms. Cell Metabolism. 19: 739-40. PMID 24807220 DOI: 10.1016/j.cmet.2014.04.011  1
2014 Seluzicki A, Flourakis M, Kula-Eversole E, Zhang L, Kilman V, Allada R. Dual PDF signaling pathways reset clocks via TIMELESS and acutely excite target neurons to control circadian behavior. Plos Biology. 12: e1001810. PMID 24643294 DOI: 10.1371/journal.pbio.1001810  1
2013 Lear BC, Darrah EJ, Aldrich BT, Gebre S, Scott RL, Nash HA, Allada R. UNC79 and UNC80, putative auxiliary subunits of the NARROW ABDOMEN ion channel, are indispensable for robust circadian locomotor rhythms in Drosophila. Plos One. 8: e78147. PMID 24223770 DOI: 10.1371/journal.pone.0078147  1
2013 Lim C, Allada R. Emerging roles for post-transcriptional regulation in circadian clocks. Nature Neuroscience. 16: 1544-50. PMID 24165681 DOI: 10.1038/nn.3543  1
2013 Lim C, Allada R. ATAXIN-2 activates PERIOD translation to sustain circadian rhythms in Drosophila. Science (New York, N.Y.). 340: 875-9. PMID 23687047 DOI: 10.1126/science.1234785  1
2012 Pfeiffenberger C, Allada R. Cul3 and the BTB adaptor insomniac are key regulators of sleep homeostasis and a dopamine arousal pathway in Drosophila. Plos Genetics. 8: e1003003. PMID 23055946 DOI: 10.1371/journal.pgen.1003003  1
2011 Lim C, Lee J, Choi C, Kilman VL, Kim J, Park SM, Jang SK, Allada R, Choe J. The novel gene twenty-four defines a critical translational step in the Drosophila clock. Nature. 470: 399-403. PMID 21331043 DOI: 10.1038/nature09728  1
2010 Pfeiffenberger C, Lear BC, Keegan KP, Allada R. Processing sleep data created with the Drosophila Activity Monitoring (DAM) System. Cold Spring Harbor Protocols. 2010: pdb.prot5520. PMID 21041393 DOI: 10.1101/pdb.prot5520  1
2010 Pfeiffenberger C, Lear BC, Keegan KP, Allada R. Processing circadian data collected from the Drosophila Activity Monitoring (DAM) System. Cold Spring Harbor Protocols. 2010: pdb.prot5519. PMID 21041392 DOI: 10.1101/pdb.prot5519  1
2010 Pfeiffenberger C, Lear BC, Keegan KP, Allada R. Locomotor activity level monitoring using the Drosophila Activity Monitoring (DAM) System. Cold Spring Harbor Protocols. 2010: pdb.prot5518. PMID 21041391 DOI: 10.1101/pdb.prot5518  1
2010 Kula-Eversole E, Nagoshi E, Shang Y, Rodriguez J, Allada R, Rosbash M. Surprising gene expression patterns within and between PDF-containing circadian neurons in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 107: 13497-502. PMID 20624977 DOI: 10.1073/pnas.1002081107  1
2010 Zhang L, Chung BY, Lear BC, Kilman VL, Liu Y, Mahesh G, Meissner RA, Hardin PE, Allada R. DN1(p) circadian neurons coordinate acute light and PDF inputs to produce robust daily behavior in Drosophila. Current Biology : Cb. 20: 591-9. PMID 20362452 DOI: 10.1016/j.cub.2010.02.056  1
2010 Allada R, Chung BY. Circadian organization of behavior and physiology in Drosophila. Annual Review of Physiology. 72: 605-24. PMID 20148690 DOI: 10.1146/annurev-physiol-021909-135815  1
2010 Allada R. Genetics of Sleep in a Simple Model Organism: Drosophila Principles and Practice of Sleep Medicine: Fifth Edition. 151-160. DOI: 10.1016/B978-1-4160-6645-3.00013-X  1
2010 Allada R, Emery P. Genetic Regulation of Circadian Rhythms in Drosophila Encyclopedia of Neuroscience. 655-661. DOI: 10.1016/B978-008045046-9.01615-6  1
2009 Zhang L, Lear BC, Seluzicki A, Allada R. The CRYPTOCHROME photoreceptor gates PDF neuropeptide signaling to set circadian network hierarchy in Drosophila. Current Biology : Cb. 19: 2050-5. PMID 19913424 DOI: 10.1016/j.cub.2009.10.058  1
2009 Kilman VL, Allada R. Genetic analysis of ectopic circadian clock induction in Drosophila. Journal of Biological Rhythms. 24: 368-78. PMID 19755582 DOI: 10.1177/0748730409343761  1
2009 Lear BC, Zhang L, Allada R. The neuropeptide PDF acts directly on evening pacemaker neurons to regulate multiple features of circadian behavior. Plos Biology. 7: e1000154. PMID 19621061 DOI: 10.1371/journal.pbio.1000154  1
2009 Kilman VL, Zhang L, Meissner RA, Burg E, Allada R. Perturbing dynamin reveals potent effects on the Drosophila circadian clock. Plos One. 4: e5235. PMID 19384421 DOI: 10.1371/journal.pone.0005235  1
2009 Chung BY, Kilman VL, Keath JR, Pitman JL, Allada R. The GABA(A) receptor RDL acts in peptidergic PDF neurons to promote sleep in Drosophila. Current Biology : Cb. 19: 386-90. PMID 19230663 DOI: 10.1016/j.cub.2009.01.040  1
2008 Allada R. How flies time when they're having brunch. Cell Metabolism. 8: 279-80. PMID 18840357 DOI: 10.1016/j.cmet.2008.09.007  1
2008 Meissner RA, Kilman VL, Lin JM, Allada R. TIMELESS is an important mediator of CK2 effects on circadian clock function in vivo. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 9732-40. PMID 18815259 DOI: 10.1523/JNEUROSCI.0840-08.2008  1
2008 Allada R, Siegel JM. Unearthing the phylogenetic roots of sleep. Current Biology : Cb. 18: R670-R679. PMID 18682212 DOI: 10.1016/j.cub.2008.06.033  1
2008 Kahali B, Trott R, Paroush Z, Allada R, Bishop CP, Bidwai AP. Drosophila CK2 phosphorylates Hairy and regulates its activity in vivo. Biochemical and Biophysical Research Communications. 373: 637-42. PMID 18601910 DOI: 10.1016/j.bbrc.2008.06.084  1
2008 Allada R. An emerging link between general anesthesia and sleep. Proceedings of the National Academy of Sciences of the United States of America. 105: 2257-8. PMID 18272494 DOI: 10.1073/pnas.0711532105  1
2008 Smith EM, Lin JM, Meissner RA, Allada R. Dominant-negative CK2alpha induces potent effects on circadian rhythmicity. Plos Genetics. 4: e12. PMID 18208335 DOI: 10.1371/journal.pgen.0040012  1
2007 Keegan KP, Pradhan S, Wang JP, Allada R. Meta-analysis of Drosophila circadian microarray studies identifies a novel set of rhythmically expressed genes. Plos Computational Biology. 3: e208. PMID 17983263 DOI: 10.1371/journal.pcbi.0030208  1
2007 Lim C, Chung BY, Pitman JL, McGill JJ, Pradhan S, Lee J, Keegan KP, Choe J, Allada R. Clockwork orange encodes a transcriptional repressor important for circadian-clock amplitude in Drosophila. Current Biology : Cb. 17: 1082-9. PMID 17555964 DOI: 10.1016/j.cub.2007.05.039  1
2007 Allada R. Two oscillators are better than one: a circadian pacemaker escapes from the light. Neuron. 53: 621-3. PMID 17329201 DOI: 10.1016/j.neuron.2007.02.016  1
2006 Bose A, Kahali B, Zhang S, Lin JM, Allada R, Karandikar U, Bidwai AP. Drosophila CK2 regulates lateral-inhibition during eye and bristle development. Mechanisms of Development. 123: 649-64. PMID 16930955 DOI: 10.1016/j.mod.2006.07.003  1
2006 Pitman JL, McGill JJ, Keegan KP, Allada R. A dynamic role for the mushroom bodies in promoting sleep in Drosophila. Nature. 441: 753-6. PMID 16760979 DOI: 10.1038/nature04739  1
2005 Lear BC, Lin JM, Keath JR, McGill JJ, Raman IM, Allada R. The ion channel narrow abdomen is critical for neural output of the Drosophila circadian pacemaker. Neuron. 48: 965-76. PMID 16364900 DOI: 10.1016/j.neuron.2005.10.030  1
2005 Allada R, Meissner RA. Casein kinase 2, circadian clocks, and the flight from mutagenic light. Molecular and Cellular Biochemistry. 274: 141-9. PMID 16335534 DOI: 10.1007/s11010-005-2943-1  1
2005 Lin JM, Schroeder A, Allada R. In vivo circadian function of casein kinase 2 phosphorylation sites in Drosophila PERIOD. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 25: 11175-83. PMID 16319317 DOI: 10.1523/JNEUROSCI.2159-05.2005  1
2005 Lear BC, Merrill CE, Lin JM, Schroeder A, Zhang L, Allada R. A G protein-coupled receptor, groom-of-PDF, is required for PDF neuron action in circadian behavior. Neuron. 48: 221-7. PMID 16242403 DOI: 10.1016/j.neuron.2005.09.008  1
2003 Rosbash M, Allada R, McDonald M, Peng Y, Zhao J. Circadian rhythms in Drosophila. Novartis Foundation Symposium. 253: 223-32; discussion 5. PMID 14712924  1
2003 Allada R, Kadener S, Nandakumar N, Rosbash M. A recessive mutant of Drosophila Clock reveals a role in circadian rhythm amplitude. The Embo Journal. 22: 3367-75. PMID 12839998 DOI: 10.1093/emboj/cdg318  1
2003 Zhao J, Kilman VL, Keegan KP, Peng Y, Emery P, Rosbash M, Allada R. Drosophila clock can generate ectopic circadian clocks. Cell. 113: 755-66. PMID 12809606 DOI: 10.1016/S0092-8674(03)00400-8  1
2003 Allada R. Circadian clocks: a tale of two feedback loops. Cell. 112: 284-6. PMID 12581517 DOI: 10.1016/S0092-8674(03)00076-X  1
2002 Nash HA, Scott RL, Lear BC, Allada R. An unusual cation channel mediates photic control of locomotion in Drosophila. Current Biology : Cb. 12: 2152-8. PMID 12498692 DOI: 10.1016/S0960-9822(02)01358-1  1
2002 Lin JM, Kilman VL, Keegan K, Paddock B, Emery-Le M, Rosbash M, Allada R. A role for casein kinase 2alpha in the Drosophila circadian clock. Nature. 420: 816-20. PMID 12447397 DOI: 10.1038/nature01235  1
2002 Turek FW, Allada R. Liver has rhythm. Hepatology (Baltimore, Md.). 35: 743-5. PMID 11915018 DOI: 10.1053/jhep.2002.32873  1
2001 Allada R, Emery P, Takahashi JS, Rosbash M. Stopping time: the genetics of fly and mouse circadian clocks. Annual Review of Neuroscience. 24: 1091-119. PMID 11520929 DOI: 10.1146/annurev.neuro.24.1.1091  1
2000 So WV, Sarov-Blat L, Kotarski CK, McDonald MJ, Allada R, Rosbash M. takeout, a novel Drosophila gene under circadian clock transcriptional regulation. Molecular and Cellular Biology. 20: 6935-44. PMID 10958689 DOI: 10.1128/MCB.20.18.6935-6944.2000  1
2000 Poteat HT, Chen P, Loughlin KR, Winkelman JW, Allada R, Ma'luf N, Tanasijevic MJ, Bates DW. Appropriateness of prostate-specific antigen testing. American Journal of Clinical Pathology. 113: 421-8. PMID 10705824 DOI: 10.1309/E11X-491Y-GUJH-EGGF  1
1999 Ishida N, Kaneko M, Allada R. Biological clocks. Proceedings of the National Academy of Sciences of the United States of America. 96: 8819-20. PMID 10430850 DOI: 10.1073/pnas.96.16.8819  1
1998 Allada R, White NE, So WV, Hall JC, Rosbash M. A mutant Drosophila homolog of mammalian Clock disrupts circadian rhythms and transcription of period and timeless. Cell. 93: 791-804. PMID 9630223 DOI: 10.1016/S0092-8674(00)81440-3  1
1996 Rosbash M, Allada R, Dembinska M, Guo WQ, Le M, Marrus S, Qian Z, Rutila J, Yaglom J, Zeng H. A Drosophila circadian clock. Cold Spring Harbor Symposia On Quantitative Biology. 61: 265-78. PMID 9246455  1
1996 Wisniewski J, Orosz A, Allada R, Wu C. The C-terminal region of Drosophila heat shock factor (HSF) contains a constitutively functional transactivation domain. Nucleic Acids Research. 24: 367-74. PMID 8628664 DOI: 10.1093/nar/24.2.367  1
1993 Allada R, Nash HA. Drosophila melanogaster as a model for study of general anesthesia: the quantitative response to clinical anesthetics and alkanes. Anesthesia and Analgesia. 77: 19-26. PMID 8317731  1
1989 Terpenning MS, Allada R, Kauffman CA. Intermittent urethral catheterization in the elderly. Journal of the American Geriatrics Society. 37: 411-6. PMID 2649539  1
Show low-probability matches.