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Joseph Rodriguez, Ph.D. - Publications

Affiliations: 
Molecular and Cell Biology Brandeis University, Waltham, MA, United States 
Area:
Molecular Genetics of RNA Processing and Behavior
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22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Wan Y, Anastasakis DG, Rodriguez J, Palangat M, Gudla P, Zaki G, Tandon M, Pegoraro G, Chow CC, Hafner M, Larson DR. Dynamic imaging of nascent RNA reveals general principles of transcription dynamics and stochastic splice site selection. Cell. PMID 33979654 DOI: 10.1016/j.cell.2021.04.012  0.429
2020 Rodriguez J, Larson DR. Transcription in Living Cells: Molecular Mechanisms of Bursting. Annual Review of Biochemistry. PMID 32208766 DOI: 10.1146/Annurev-Biochem-011520-105250  0.469
2018 Rodriguez J, Ren G, Day CR, Zhao K, Chow CC, Larson DR. Intrinsic Dynamics of a Human Gene Reveal the Basis of Expression Heterogeneity. Cell. PMID 30554876 DOI: 10.1016/J.Cell.2018.11.026  0.461
2018 Tsai PF, Dell'Orso S, Rodriguez J, Vivanco KO, Ko KD, Jiang K, Juan AH, Sarshad AA, Vian L, Tran M, Wangsa D, Wang AH, Perovanovic J, Anastasakis D, Ralston E, et al. A Muscle-Specific Enhancer RNA Mediates Cohesin Recruitment and Regulates Transcription In trans. Molecular Cell. 71: 129-141.e8. PMID 29979962 DOI: 10.1016/J.Molcel.2018.06.008  0.468
2017 Kozlov A, Jaumouillé E, Machado Almeida P, Koch R, Rodriguez J, Abruzzi KC, Nagoshi E. A screening of UNF targets identifies Rnb, a novel regulator of Drosophila circadian rhythms. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 28592698 DOI: 10.1523/Jneurosci.3286-16.2017  0.368
2016 Lenstra TL, Rodriguez J, Chen H, Larson DR. Transcription Dynamics in Living Cells. Annual Review of Biophysics. PMID 27145880 DOI: 10.1146/Annurev-Biophys-062215-010838  0.429
2015 Abascal F, Ezkurdia I, Rodriguez-Rivas J, Rodriguez JM, Del Pozo A, Vázquez J, Valencia A, Tress ML. Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level. Plos Computational Biology. 11: e1004325. PMID 26061177 DOI: 10.1371/Journal.Pcbi.1004325  0.344
2013 Rodriguez J, Tang CH, Khodor YL, Vodala S, Menet JS, Rosbash M. Nascent-Seq analysis of Drosophila cycling gene expression. Proceedings of the National Academy of Sciences of the United States of America. 110: E275-84. PMID 23297234 DOI: 10.1073/Pnas.1219969110  0.745
2012 Luo W, Li Y, Tang CH, Abruzzi KC, Rodriguez J, Pescatore S, Rosbash M. CLOCK deubiquitylation by USP8 inhibits CLK/CYC transcription in Drosophila. Genes & Development. 26: 2536-49. PMID 23154984 DOI: 10.1101/Gad.200584.112  0.665
2012 Menet JS, Rodriguez J, Abruzzi KC, Rosbash M. Nascent-Seq reveals novel features of mouse circadian transcriptional regulation. Elife. 1: e00011. PMID 23150795 DOI: 10.7554/Elife.00011  0.685
2012 Vodala S, Pescatore S, Rodriguez J, Buescher M, Chen YW, Weng R, Cohen SM, Rosbash M. The oscillating miRNA 959-964 cluster impacts Drosophila feeding time and other circadian outputs. Cell Metabolism. 16: 601-12. PMID 23122660 DOI: 10.1016/J.Cmet.2012.10.002  0.561
2012 Rodriguez J, Menet JS, Rosbash M. Nascent-seq indicates widespread cotranscriptional RNA editing in Drosophila. Molecular Cell. 47: 27-37. PMID 22658416 DOI: 10.1016/J.Molcel.2012.05.002  0.624
2012 Menet JS, Rodriguez J, Abruzzi KC, Rosbash M. Author response: Nascent-Seq reveals novel features of mouse circadian transcriptional regulation Elife. DOI: 10.7554/Elife.00011.026  0.581
2011 Khodor YL, Rodriguez J, Abruzzi KC, Tang CH, Marr MT, Rosbash M. Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila. Genes & Development. 25: 2502-12. PMID 22156210 DOI: 10.1101/Gad.178962.111  0.732
2011 Abruzzi KC, Rodriguez J, Menet JS, Desrochers J, Zadina A, Luo W, Tkachev S, Rosbash M. Drosophila CLOCK target gene characterization: implications for circadian tissue-specific gene expression. Genes & Development. 25: 2374-86. PMID 22085964 DOI: 10.1101/Gad.178079.111  0.645
2010 van der Linden AM, Beverly M, Kadener S, Rodriguez J, Wasserman S, Rosbash M, Sengupta P. Genome-wide analysis of light- and temperature-entrained circadian transcripts in Caenorhabditis elegans. Plos Biology. 8: e1000503. PMID 20967231 DOI: 10.1371/Journal.Pbio.1000503  0.711
2010 Kula-Eversole E, Nagoshi E, Shang Y, Rodriguez J, Allada R, Rosbash M. Surprising gene expression patterns within and between PDF-containing circadian neurons in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 107: 13497-502. PMID 20624977 DOI: 10.1073/Pnas.1002081107  0.703
2010 Menet JS, Abruzzi KC, Desrochers J, Rodriguez J, Rosbash M. Dynamic PER repression mechanisms in the Drosophila circadian clock: from on-DNA to off-DNA. Genes & Development. 24: 358-67. PMID 20159956 DOI: 10.1101/Gad.1883910  0.529
2009 Kadener S, Rodriguez J, Abruzzi KC, Khodor YL, Sugino K, Marr MT, Nelson S, Rosbash M. Genome-wide identification of targets of the drosha-pasha/DGCR8 complex. Rna (New York, N.Y.). 15: 537-45. PMID 19223442 DOI: 10.1261/Rna.1319309  0.669
1985 Jacquier A, Rodriguez JR, Rosbash M. A quantitative analysis of the effects of 5' junction and TACTAAC box mutants and mutant combinations on yeast mRNA splicing. Cell. 43: 423-30. PMID 3935321 DOI: 10.1016/0092-8674(85)90172-2  0.551
1984 Rodriguez JR, Pikielny CW, Rosbash M. In vivo characterization of yeast mRNA processing intermediates. Cell. 39: 603-10. PMID 6096013 DOI: 10.1016/0092-8674(84)90467-7  0.634
1983 Teem JL, Rodriguez JR, Tung L, Rosbash M. The rna2 mutation of yeast affects the processing of actin mRNA as well as ribosomal protein mRNAs. Molecular & General Genetics : Mgg. 192: 101-3. PMID 6358792 DOI: 10.1007/Bf00327653  0.768
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