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Eric Klavins - Publications

Affiliations: 
Electrical Engineering University of Washington, Seattle, Seattle, WA 
Area:
Biomedical Engineering, Genetics, Microbiology Biology
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25/53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Hossain A, Lopez E, Halper SM, Cetnar DP, Reis AC, Strickland D, Klavins E, Salis HM. Automated design of thousands of nonrepetitive parts for engineering stable genetic systems. Nature Biotechnology. PMID 32661437 DOI: 10.1038/S41587-020-0584-2  0.319
2019 Yang Y, Nemhauser J, Klavins E. Synthetic Bistability and Differentiation in Yeast. Acs Synthetic Biology. PMID 31021593 DOI: 10.1021/Acssynbio.8B00524  0.381
2018 Khakhar A, Leydon AR, Lemmex AC, Klavins E, Nemhauser JL. Synthetic hormone-responsive transcription factors can monitor and re-program plant development. Elife. 7. PMID 29714687 DOI: 10.7554/Elife.34702  0.307
2017 Gander MW, Vrana JD, Voje WE, Carothers JM, Klavins E. Digital logic circuits in yeast with CRISPR-dCas9 NOR gates. Nature Communications. 8: 15459. PMID 28541304 DOI: 10.1038/Ncomms15459  0.309
2015 Khakhar A, Bolten NJ, Nemhauser J, Klavins E. Cell-Cell Communication in Yeast Using Auxin Biosynthesis and Auxin Responsive CRISPR Transcription Factors. Acs Synthetic Biology. PMID 26102245 DOI: 10.1021/Acssynbio.5B00064  0.31
2015 Takahashi CN, Miller AW, Ekness F, Dunham MJ, Klavins E. A low cost, customizable turbidostat for use in synthetic circuit characterization. Acs Synthetic Biology. 4: 32-8. PMID 25036317 DOI: 10.1021/Sb500165G  0.314
2014 Pierre-Jerome E, Jang SS, Havens KA, Nemhauser JL, Klavins E. Recapitulation of the forward nuclear auxin response pathway in yeast. Proceedings of the National Academy of Sciences of the United States of America. 111: 9407-12. PMID 24979769 DOI: 10.1073/Pnas.1324147111  0.52
2014 Oishi K, Klavins E. Framework for engineering finite state machines in gene regulatory networks. Acs Synthetic Biology. 3: 652-65. PMID 24932713 DOI: 10.1021/Sb4001799  0.676
2013 Yu H, Moss BL, Jang SS, Prigge M, Klavins E, Nemhauser JL, Estelle M. Mutations in the TIR1 auxin receptor that increase affinity for auxin/indole-3-acetic acid proteins result in auxin hypersensitivity. Plant Physiology. 162: 295-303. PMID 23539280 DOI: 10.1104/Pp.113.215582  0.499
2012 Jang SS, Oishi KT, Egbert RG, Klavins E. Specification and simulation of synthetic multicelled behaviors. Acs Synthetic Biology. 1: 365-74. PMID 23651290 DOI: 10.1021/Sb300034M  0.618
2012 Thorsley D, Klavins E. Estimation and discrimination of stochastic biochemical circuits from time-lapse microscopy data. Plos One. 7: e47151. PMID 23139740 DOI: 10.1371/Journal.Pone.0047151  0.378
2012 Egbert RG, Klavins E. Fine-tuning gene networks using simple sequence repeats. Proceedings of the National Academy of Sciences of the United States of America. 109: 16817-22. PMID 22927382 DOI: 10.1073/Pnas.1205693109  0.737
2012 Havens KA, Guseman JM, Jang SS, Pierre-Jerome E, Bolten N, Klavins E, Nemhauser JL. A synthetic approach reveals extensive tunability of auxin signaling. Plant Physiology. 160: 135-42. PMID 22843664 DOI: 10.1104/Pp.112.202184  0.537
2011 Oishi K, Klavins E. Biomolecular implementation of linear I/O systems Iet Systems Biology. 5: 252-260. PMID 21823756 DOI: 10.1049/Iet-Syb.2010.0056  0.672
2011 Napp N, Klavins E. A compositional framework for programming stochastically interacting robots International Journal of Robotics Research. 30: 713-729. DOI: 10.1177/0278364911403018  0.31
2011 Napp N, Burden S, Klavins E. Setpoint regulation for stochastically interacting robots Autonomous Robots. 30: 57-71. DOI: 10.1007/S10514-010-9203-2  0.343
2010 Thorsley D, Klavins E. Approximating stochastic biochemical processes with Wasserstein pseudometrics. Iet Systems Biology. 4: 193-211. PMID 20500000 DOI: 10.1049/Iet-Syb.2009.0039  0.324
2010 Shaw FW, Klavins E. Grouper: A proof-of-concept wearable wireless group coordinator Ubicomp'10 - Proceedings of the 2010 Acm Conference On Ubiquitous Computing. 379-380. DOI: 10.1145/1864431.1864445  0.617
2009 Shaw FW, Klavins E. Distributed Estimation and State Assignment for Stochastically Interacting Robots* Ifac Proceedings Volumes. 42: 276-281. DOI: 10.3182/20090924-3-It-4005.00047  0.681
2008 Shaw FW, Klavins E. Distributed estimation and control for stochastically interacting robots Proceedings of the Ieee Conference On Decision and Control. 1895-1901. DOI: 10.1109/CDC.2008.4739475  0.651
2008 McNew JM, Klavins E. Non-deterministic reconfiguration of tree formations Proceedings of the American Control Conference. 690-697. DOI: 10.1109/ACC.2008.4586573  0.578
2007 Waydo S, Hauser J, Bailey R, Klavins E, Murray RM. UAV as a reliable Wingman: A flight demonstration Ieee Transactions On Control Systems Technology. 15: 680-688. DOI: 10.1109/Tcst.2007.899172  0.31
2007 McNew JM, Klavins E. A grammatical approach to cooperative control Lecture Notes in Economics and Mathematical Systems. 588: 117-138. DOI: 10.1007/978-3-540-48271-0_8  0.631
2006 Del Vecchio D, Murray RM, Klavins E. Discrete state estimators for systems on a lattice Automatica. 42: 271-285. DOI: 10.1016/J.Automatica.2005.10.006  0.331
2004 Klavins E, Murray R. Sensor and actuator networks - Distributed algorithms for cooperative control Ieee Pervasive Computing. 3: 56-65. DOI: 10.1109/Mprv.2004.1269132  0.337
Low-probability matches (unlikely to be authored by this person)
2002 Klavins E, Koditschek D. Phase Regulation of Decentralized Cyclic Robotic Systems The International Journal of Robotics Research. 21: 257-275. DOI: 10.1177/027836402320556430  0.299
2007 Yim M, Shen WM, Salemi B, Rus D, Moll M, Lipson H, Klavins E, Chirikjian GS. Modular self-reconfigurable robot systems [Grand challenges of robotics] Ieee Robotics and Automation Magazine. 14: 43-52. DOI: 10.1109/Mra.2007.339623  0.293
2015 Guseman JM, Hellmuth A, Lanctot A, Feldman TP, Moss BL, Klavins E, Calderón Villalobos LI, Nemhauser JL. Auxin-induced degradation dynamics set the pace for lateral root development. Development (Cambridge, England). 142: 905-9. PMID 25633353 DOI: 10.1242/Jcs.170464  0.291
2006 Klavins E, Ghrist R, Lipsky D. A grammatical approach to self-organizing robotic systems Ieee Transactions On Automatic Control. 51: 949-962. DOI: 10.1109/Tac.2006.876950  0.285
2009 Napp N, Thorsley D, Klavins E. Hidden markov models for non-well-mixed reaction networks Proceedings of the American Control Conference. 737-744. DOI: 10.1109/ACC.2009.5160103  0.283
2007 Klavins E. Programmable Self-Assembly Ieee Control Systems Magazine. 27: 43-56. DOI: 10.1109/Mcs.2007.384126  0.282
2017 Younger D, Berger S, Baker D, Klavins E. High-throughput characterization of protein-protein interactions by reprogramming yeast mating. Proceedings of the National Academy of Sciences of the United States of America. PMID 29087945 DOI: 10.1073/Pnas.1705867114  0.281
2007 Belta C, Bicchi A, Egerstedt M, Frazzoli E, Klavins E, Pappas G. Symbolic planning and control of robot motion [Grand Challenges of Robotics] Ieee Robotics & Automation Magazine. 14: 61-70. DOI: 10.1109/Mra.2007.339624  0.274
2007 Bishop JD, Klavins E. An improved autonomous DNA nanomotor. Nano Letters. 7: 2574-7. PMID 17655267 DOI: 10.1021/Nl070752S  0.258
2017 de Lange O, Klavins E, Nemhauser J. Synthetic genetic circuits in crop plants. Current Opinion in Biotechnology. 49: 16-22. PMID 28772191 DOI: 10.1016/J.Copbio.2017.07.003  0.258
2008 Georgiev D, Klavins E. Model discrimination of polynomial systems via stochastic inputs Proceedings of the Ieee Conference On Decision and Control. 3323-3329. DOI: 10.1109/CDC.2008.4739485  0.253
2018 Khakhar A, Leydon AR, Lemmex AC, Klavins E, Nemhauser JL. Author response: Synthetic hormone-responsive transcription factors can monitor and re-program plant development Elife. DOI: 10.7554/Elife.34702.032  0.246
2014 Klavins E. Lightening the load in synthetic biology. Nature Biotechnology. 32: 1198-200. PMID 25489836 DOI: 10.1038/Nbt.3089  0.227
2011 Napp N, Klavins E. Load balancing for multi-robot construction Proceedings - Ieee International Conference On Robotics and Automation. 254-260. DOI: 10.1109/ICRA.2011.5979634  0.208
2005 Bishop J, Burden S, Klavins E, Kreisberg R, Malone W, Napp N, Nguyen T. Programmable parts: A demonstration of the grammatical approach to self-organization 2005 Ieee/Rsj International Conference On Intelligent Robots and Systems, Iros. 2644-2651. DOI: 10.1109/IROS.2005.1545375  0.206
2022 Carignano A, Chen DH, Mallory C, Wright RC, Seelig G, Klavins E. Modular, robust and extendible multicellular circuit design in yeast. Elife. 11. PMID 35312478 DOI: 10.7554/eLife.74540  0.199
2022 Singer JM, Novotney S, Strickland D, Haddox HK, Leiby N, Rocklin GJ, Chow CM, Roy A, Bera AK, Motta FC, Cao L, Strauch EM, Chidyausiku TM, Ford A, Ho E, ... ... Klavins E, et al. Large-scale design and refinement of stable proteins using sequence-only models. Plos One. 17: e0265020. PMID 35286324 DOI: 10.1371/journal.pone.0265020  0.169
2023 Scott M, de Lange O, Quaranto X, Cardiff R, Klavins E. Open-source workflow design and management software to interrogate duckweed growth conditions and stress responses. Plant Methods. 19: 95. PMID 37653538 DOI: 10.1186/s13007-023-01065-3  0.164
2003 Waydo S, Dunbar WB, Klavins E. Toward Feedback Stabilization of Faulty Software Systems: A Case Study Proceedings of the Ieee Conference On Decision and Control. 1: 738-743.  0.159
2021 Vrana J, de Lange O, Yang Y, Newman G, Saleem A, Miller A, Cordray C, Halabiya S, Parks M, Lopez E, Goldberg S, Keller B, Strickland D, Klavins E. Aquarium: open-source laboratory software for design, execution and data management. Synthetic Biology (Oxford, England). 6: ysab006. PMID 34151028 DOI: 10.1093/synbio/ysab006  0.147
2010 Napp N, Klavins E. Robust by composition: Programs for multi-robot systems Proceedings - Ieee International Conference On Robotics and Automation. 2459-2466. DOI: 10.1109/ROBOT.2010.5509776  0.145
2020 Maguire JB, Haddox HK, Strickland D, Halabiya SF, Coventry B, Griffin JR, Pulavarti SVSRK, Cummins M, Thieker DF, Klavins E, Szyperski T, DiMaio F, Baker D, Kuhlman B. Perturbing the energy landscape for improved packing during computational protein design. Proteins. PMID 33249652 DOI: 10.1002/prot.26030  0.126
2022 Vrana JD, Panpradist N, Higa N, Ko D, Ruth P, Kanthula R, Lai JJ, Yang Y, Sakr SR, Chohan B, Chung MH, Frenkel LM, Lutz BR, Klavins E, Beck IA. Implementation of an interactive mobile application to pilot a rapid assay to detect HIV drug resistance mutations in Kenya. Plos Global Public Health. 2: e0000185. PMID 36962187 DOI: 10.1371/journal.pgph.0000185  0.109
2024 Roth O, Yechezkel S, Serero O, Eliyahu A, Vints I, Tzeela P, Carignano A, Janacek DP, Peters V, Kessel A, Dwivedi V, Carmeli-Weissberg M, Shaya F, Faigenboim-Doron A, Ung KL, ... ... Klavins E, et al. Slow release of a synthetic auxin induces formation of adventitious roots in recalcitrant woody plants. Nature Biotechnology. PMID 38267759 DOI: 10.1038/s41587-023-02065-3  0.1
2007 Dunbar WB, Wilson NA, Schaeffer J, Klavins E, Bishop J, Tanner BCW. Dynamics and control of biomolecules: Research venues and opportunities Proceedings of the Ieee Conference On Decision and Control. 3297-3307. DOI: 10.1109/CDC.2007.4435051  0.089
2006 Napp N, Burden S, Klavins E. The statistical dynamics of programmed self-assembly Proceedings - Ieee International Conference On Robotics and Automation. 2006: 1469-1476. DOI: 10.1109/ROBOT.2006.1641916  0.082
2017 Mensah P, Merkuryev Y, Klavins E, Manak S. Supply Chain Risks Analysis of a Logging Company: Conceptual Model Procedia Computer Science. 104: 313-320. DOI: 10.1016/J.PROCS.2017.01.140  0.051
2019 Panpradist N, Beck IA, Vrana J, Higa N, McIntyre D, Ruth PS, So I, Kline EC, Kanthula R, Wong-On-Wing A, Lim J, Ko D, Milne R, Rossouw T, Feucht UD, ... ... Klavins EE, et al. OLA-Simple: A software-guided HIV-1 drug resistance test for low-resource laboratories. Ebiomedicine. PMID 31767540 DOI: 10.1016/j.ebiom.2019.11.002  0.038
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