Rafal Bogacz, Ph.D. - Publications

Affiliations: 
computer science University of Bristol, Bristol, England, United Kingdom 
Area:
Computational neuroscience
Website:
http://www.cs.bris.ac.uk/~rafal/

55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Patai EZ, Foltynie T, Limousin P, Akram H, Zrinzo L, Bogacz R, Litvak V. Conflict detection in a sequential decision task is associated with increased cortico-subthalamic coherence and prolonged subthalamic oscillatory response in the beta band. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 35501153 DOI: 10.1523/JNEUROSCI.0572-21.2022  0.547
2021 Oswal A, Cao C, Yeh CH, Neumann WJ, Gratwicke J, Akram H, Horn A, Li D, Zhan S, Zhang C, Wang Q, Zrinzo L, Foltynie T, Limousin P, Bogacz R, et al. Neural signatures of hyperdirect pathway activity in Parkinson's disease. Nature Communications. 12: 5185. PMID 34465771 DOI: 10.1038/s41467-021-25366-0  0.466
2020 Duchet B, Weerasinghe G, Cagnan H, Brown P, Bick C, Bogacz R. Phase-dependence of response curves to deep brain stimulation and their relationship: from essential tremor patient data to a Wilson-Cowan model. Journal of Mathematical Neuroscience. 10: 4. PMID 32232686 DOI: 10.1186/S13408-020-00081-0  0.305
2019 Richards BA, Lillicrap TP, Beaudoin P, Bengio Y, Bogacz R, Christensen A, Clopath C, Costa RP, de Berker A, Ganguli S, Gillon CJ, Hafner D, Kepecs A, Kriegeskorte N, Latham P, et al. A deep learning framework for neuroscience. Nature Neuroscience. 22: 1761-1770. PMID 31659335 DOI: 10.1038/S41593-019-0520-2  0.698
2019 Weerasinghe G, Duchet B, Cagnan H, Brown P, Bick C, Bogacz R. Predicting the effects of deep brain stimulation using a reduced coupled oscillator model. Plos Computational Biology. 15: e1006575. PMID 31393880 DOI: 10.1371/Journal.Pcbi.1006575  0.321
2018 Groschner LN, Chan Wah Hak L, Bogacz R, DasGupta S, Miesenböck G. Dendritic Integration of Sensory Evidence in Perceptual Decision-Making. Cell. PMID 29706545 DOI: 10.1016/J.Cell.2018.03.075  0.36
2018 Herz DM, Little S, Pedrosa DJ, Tinkhauser G, Cheeran B, Foltynie T, Bogacz R, Brown P. Mechanisms Underlying Decision-Making as Revealed by Deep-Brain Stimulation in Patients with Parkinson's Disease. Current Biology : Cb. PMID 29606416 DOI: 10.1016/J.Cub.2018.02.057  0.386
2018 Leimbach F, Georgiev D, Litvak V, Antoniades C, Limousin P, Jahanshahi M, Bogacz R. Deep Brain Stimulation of the Subthalamic Nucleus Does Not Affect the Decrease of Decision Threshold during the Choice Process When There Is No Conflict, Time Pressure, or Reward. Journal of Cognitive Neuroscience. 1-9. PMID 29488846 DOI: 10.1162/Jocn_A_01252  0.57
2017 Malhotra G, Leslie DS, Ludwig CJH, Bogacz R. Time-varying decision boundaries: insights from optimality analysis. Psychonomic Bulletin & Review. PMID 28730465 DOI: 10.3758/S13423-017-1340-6  0.364
2017 Malhotra G, Leslie DS, Ludwig CJ, Bogacz R. Overcoming Indecision by Changing the Decision Boundary. Journal of Experimental Psychology. General. PMID 28406682 DOI: 10.1037/Xge0000286  0.37
2017 Gillies MJ, Hyam JA, Weiss AR, Antoniades CA, Bogacz R, Fitzgerald JJ, Aziz TZ, Whittington MA, Green AL. The Cognitive Role of the Globus Pallidus interna; Insights from Disease States. Experimental Brain Research. PMID 28246967 DOI: 10.1007/S00221-017-4905-8  0.348
2017 Herz DM, Tan H, Brittain JS, Fischer P, Cheeran B, Green AL, FitzGerald J, Aziz TZ, Ashkan K, Little S, Foltynie T, Limousin P, Zrinzo L, Bogacz R, Brown P. Distinct mechanisms mediate speed-accuracy adjustments in cortico-subthalamic networks. Elife. 6. PMID 28137358 DOI: 10.7554/Elife.21481  0.401
2016 Kurzawa N, Summerfield C, Bogacz R. Neural Circuits Trained with Standard Reinforcement Learning Can Accumulate Probabilistic Information during Decision Making. Neural Computation. 1-26. PMID 27870610 DOI: 10.1162/Neco_A_00917  0.427
2016 Herz DM, Bogacz R, Brown P. Neuroscience: Impaired Decision-Making in Parkinson's Disease. Current Biology : Cb. 26: R671-3. PMID 27458912 DOI: 10.1016/J.Cub.2016.05.075  0.33
2016 Bogacz R, Martin Moraud E, Abdi A, Magill PJ, Baufreton J. Properties of Neurons in External Globus Pallidus Can Support Optimal Action Selection. Plos Computational Biology. 12: e1005004. PMID 27389780 DOI: 10.1371/Journal.Pcbi.1005004  0.356
2016 Herz DM, Zavala BA, Bogacz R, Brown P. Neural Correlates of Decision Thresholds in the Human Subthalamic Nucleus. Current Biology : Cb. PMID 26996501 DOI: 10.1016/J.Cub.2016.01.051  0.377
2015 Keuken MC, Van Maanen L, Bogacz R, Schäfer A, Neumann J, Turner R, Forstmann BU. The subthalamic nucleus during decision-making with multiple alternatives. Human Brain Mapping. 36: 4041-52. PMID 26178078 DOI: 10.1002/Hbm.22896  0.366
2014 Onslow AC, Jones MW, Bogacz R. A canonical circuit for generating phase-amplitude coupling. Plos One. 9: e102591. PMID 25136855 DOI: 10.1371/Journal.Pone.0102591  0.334
2014 Antoniades CA, Bogacz R, Kennard C, FitzGerald JJ, Aziz T, Green AL. Deep brain stimulation abolishes slowing of reactions to unlikely stimuli. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 10844-52. PMID 25122887 DOI: 10.1523/Jneurosci.1065-14.2014  0.349
2014 Jahans-Price T, Gorochowski TE, Wilson MA, Jones MW, Bogacz R. Computational modeling and analysis of hippocampal-prefrontal information coding during a spatial decision-making task. Frontiers in Behavioral Neuroscience. 8: 62. PMID 24624066 DOI: 10.3389/Fnbeh.2014.00062  0.428
2014 Nevado-Holgado AJ, Mallet N, Magill PJ, Bogacz R. Effective connectivity of the subthalamic nucleus-globus pallidus network during Parkinsonian oscillations. The Journal of Physiology. 592: 1429-55. PMID 24344162 DOI: 10.1113/Jphysiol.2013.259721  0.31
2013 Cassey TC, Evens DR, Bogacz R, Marshall JA, Ludwig CJ. Adaptive sampling of information in perceptual decision-making. Plos One. 8: e78993. PMID 24312172 DOI: 10.1371/Journal.Pone.0078993  0.35
2013 Green N, Bogacz R, Huebl J, Beyer AK, Kühn AA, Heekeren HR. Reduction of influence of task difficulty on perceptual decision making by STN deep brain stimulation. Current Biology : Cb. 23: 1681-4. PMID 23932401 DOI: 10.1016/J.Cub.2013.07.001  0.404
2012 Lloyd K, Becker N, Jones MW, Bogacz R. Learning to use working memory: a reinforcement learning gating model of rule acquisition in rats. Frontiers in Computational Neuroscience. 6: 87. PMID 23115551 DOI: 10.3389/Fncom.2012.00087  0.364
2012 Coulthard EJ, Bogacz R, Javed S, Mooney LK, Murphy G, Keeley S, Whone AL. Distinct roles of dopamine and subthalamic nucleus in learning and probabilistic decision making. Brain : a Journal of Neurology. 135: 3721-34. PMID 23114368 DOI: 10.1093/Brain/Aws273  0.395
2012 Marshall JA, Bogacz R, Gilchrist ID. Consistent implementation of decisions in the brain. Plos One. 7: e43443. PMID 22984425 DOI: 10.1371/Journal.Pone.0043443  0.372
2011 Kucewicz MT, Tricklebank MD, Bogacz R, Jones MW. Dysfunctional prefrontal cortical network activity and interactions following cannabinoid receptor activation. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 15560-8. PMID 22031901 DOI: 10.1523/Jneurosci.2970-11.2011  0.367
2011 Lulham A, Bogacz R, Vogt S, Brown MW. An Infomax algorithm can perform both familiarity discrimination and feature extraction in a single network. Neural Computation. 23: 909-26. PMID 21222523 DOI: 10.1162/Neco_A_00097  0.583
2011 Onslow AC, Bogacz R, Jones MW. Quantifying phase-amplitude coupling in neuronal network oscillations. Progress in Biophysics and Molecular Biology. 105: 49-57. PMID 20869387 DOI: 10.1016/J.Pbiomolbio.2010.09.007  0.327
2011 Onslow AC, Jones MW, Bogacz R. Oscillatory mechanisms of selective integration during decision making Bmc Neuroscience. 12. DOI: 10.1186/1471-2202-12-S1-O16  0.421
2010 Zacksenhouse M, Bogacz R, Holmes P. Robust versus optimal strategies for two-alternative forced choice tasks. Journal of Mathematical Psychology. 54: 230-246. PMID 23180885 DOI: 10.1016/J.Jmp.2009.12.004  0.358
2010 Holgado AJ, Terry JR, Bogacz R. Conditions for the generation of beta oscillations in the subthalamic nucleus-globus pallidus network. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 12340-52. PMID 20844130 DOI: 10.1523/Jneurosci.0817-10.2010  0.341
2010 Forstmann BU, Anwander A, Schäfer A, Neumann J, Brown S, Wagenmakers EJ, Bogacz R, Turner R. Cortico-striatal connections predict control over speed and accuracy in perceptual decision making. Proceedings of the National Academy of Sciences of the United States of America. 107: 15916-20. PMID 20733082 DOI: 10.1073/Pnas.1004932107  0.384
2010 Zhang J, Bogacz R. Optimal decision making on the basis of evidence represented in spike trains. Neural Computation. 22: 1113-48. PMID 20028228 DOI: 10.1162/Neco.2009.05-09-1025  0.644
2010 Bogacz R, Wagenmakers EJ, Forstmann BU, Nieuwenhuis S. The neural basis of the speed-accuracy tradeoff. Trends in Neurosciences. 33: 10-6. PMID 19819033 DOI: 10.1016/J.Tins.2009.09.002  0.362
2010 Bogacz R, Hu PT, Holmes PJ, Cohen JD. Do humans produce the speed-accuracy trade-off that maximizes reward rate? Quarterly Journal of Experimental Psychology (2006). 63: 863-91. PMID 19746300 DOI: 10.1080/17470210903091643  0.356
2010 Zhang J, Bogacz R. Bounded Ornstein-Uhlenbeck models for two-choice time controlled tasks Journal of Mathematical Psychology. 54: 322-333. DOI: 10.1016/J.Jmp.2010.03.001  0.633
2009 Zhang J, Bogacz R, Holmes P. A comparison of bounded diffusion models for choice in time controlled tasks. Journal of Mathematical Psychology. 53: 231-241. PMID 19812713 DOI: 10.1016/J.Jmp.2009.03.001  0.623
2009 Marshall JA, Bogacz R, Dornhaus A, Planqué R, Kovacs T, Franks NR. On optimal decision-making in brains and social insect colonies. Journal of the Royal Society, Interface / the Royal Society. 6: 1065-74. PMID 19324679 DOI: 10.1098/Rsif.2008.0511  0.359
2008 Androulidakis Z, Lulham A, Bogacz R, Brown MW. Computational models can replicate the capacity of human recognition memory. Network (Bristol, England). 19: 161-82. PMID 18946835 DOI: 10.1080/09548980802412638  0.595
2008 Trimmer PC, Houston AI, Marshall JA, Bogacz R, Paul ES, Mendl MT, McNamara JM. Mammalian choices: combining fast-but-inaccurate and slow-but-accurate decision-making systems. Proceedings. Biological Sciences / the Royal Society. 275: 2353-61. PMID 18611852 DOI: 10.1098/Rspb.2008.0417  0.38
2007 Bogacz R, McClure SM, Li J, Cohen JD, Montague PR. Short-term memory traces for action bias in human reinforcement learning. Brain Research. 1153: 111-21. PMID 17459346 DOI: 10.1016/J.Brainres.2007.03.057  0.347
2007 Bogacz R, Usher M, Zhang J, McClelland JL. Extending a biologically inspired model of choice: multi-alternatives, nonlinearity and value-based multidimensional choice. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 362: 1655-70. PMID 17428774 DOI: 10.1098/Rstb.2007.2059  0.628
2007 Yeung N, Bogacz R, Holroyd CB, Nieuwenhuis S, Cohen JD. Theta phase resetting and the error-related negativity. Psychophysiology. 44: 39-49. PMID 17241139 DOI: 10.1111/J.1469-8986.2006.00482.X  0.545
2006 Bogacz R, Brown E, Moehlis J, Holmes P, Cohen JD. The physics of optimal decision making: a formal analysis of models of performance in two-alternative forced-choice tasks. Psychological Review. 113: 700-65. PMID 17014301 DOI: 10.1037/0033-295X.113.4.700  0.385
2005 Brown E, Gao J, Holmes P, Bogacz R, Gilzenrat M, Cohen JD. Simple neural networks that optimize decisions International Journal of Bifurcation and Chaos in Applied Sciences and Engineering. 15: 803-826. DOI: 10.1142/S0218127405012478  0.369
2005 Holmes P, Shea-Brown E, Moehlis J, Bogacz R, Gao J, Aston-Jones G, Clayton E, Rajkowski J, Cohen JD. Optimal decisions: From neural spikes, through stochastic differential equations, to behavior Ieice Transactions On Fundamentals of Electronics, Communications and Computer Sciences. 2496-2502. DOI: 10.1093/Ietfec/E88-A.10.2496  0.397
2004 Bogacz R, Cohen JD. Parameterization of connectionist models. Behavior Research Methods, Instruments, & Computers : a Journal of the Psychonomic Society, Inc. 36: 732-41. PMID 15641419 DOI: 10.3758/Bf03206554  0.3
2004 Yeung N, Bogacz R, Holroyd CB, Cohen JD. Detection of synchronized oscillations in the electroencephalogram: an evaluation of methods. Psychophysiology. 41: 822-32. PMID 15563335 DOI: 10.1111/J.1469-8986.2004.00239.X  0.559
2003 Bogacz R, Brown MW. Comparison of computational models of familiarity discrimination in the perirhinal cortex. Hippocampus. 13: 494-524. PMID 12836918 DOI: 10.1002/Hipo.10093  0.625
2003 Bogacz R, Brown MW. An anti-Hebbian model of familiarity discrimination in the perirhinal cortex Neurocomputing. 52: 1-6. DOI: 10.1016/S0925-2312(02)00738-5  0.401
2002 Bogacz R, Brown MW. The restricted influence of sparseness of coding on the capacity of familiarity discrimination networks. Network (Bristol, England). 13: 457-85. PMID 12463340 DOI: 10.1088/0954-898X_13_4_303  0.583
2002 Bogacz R, Brown MW. Capacity of perirhinal cortex network for recognising frequently repeating stimuli Neurocomputing. 44: 337-342. DOI: 10.1016/S0925-2312(02)00367-3  0.59
2001 Bogacz R, Brown MW, Giraud-Carrier C. Model of familiarity discrimination in the perirhinal cortex. Journal of Computational Neuroscience. 10: 5-23. PMID 11316340 DOI: 10.1023/A:1008925909305  0.634
2001 Bogacz R, Brown MW, Giraud-Carrier C. Model of co-operation between recency, familiarity and novelty neurons in the perirhinal cortex Neurocomputing. 38: 1121-1126. DOI: 10.1016/S0925-2312(01)00472-6  0.589
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