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Michael Rape, Ph.D. - Publications

Affiliations: 
Molecular and Cell Biology University of California, Berkeley, Berkeley, CA, United States 
Area:
Cell cycle, Ubiquitin
Website:
http://mcb.berkeley.edu/index.php?option=com_mcbfaculty&name=rapem
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77 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Mark KG, Kolla S, Aguirre JD, Garshott DM, Schmitt S, Haakonsen DL, Xu C, Kater L, Kempf G, Martínez-González B, Akopian D, See SK, Thomä NH, Rapé M. Orphan quality control shapes network dynamics and gene expression. Cell. 186: 4252-4253. PMID 37714136 DOI: 10.1016/j.cell.2023.08.006  0.646
2023 Mark KG, Kolla S, Aguirre JD, Garshott DM, Schmitt S, Haakonsen DL, Xu C, Kater L, Kempf G, Martínez-González B, Akopian D, See SK, Thomä NH, Rapé M. Orphan quality control shapes network dynamics and gene expression. Cell. PMID 37478862 DOI: 10.1016/j.cell.2023.06.015  0.718
2022 Kolla S, Ye M, Mark KG, Rapé M. Assembly and function of branched ubiquitin chains. Trends in Biochemical Sciences. PMID 35508449 DOI: 10.1016/j.tibs.2022.04.003  0.638
2022 Akopian D, McGourty CA, Rapé M. Co-adaptor driven assembly of a CUL3 E3 ligase complex. Molecular Cell. 82: 585-597.e11. PMID 35120648 DOI: 10.1016/j.molcel.2022.01.004  0.624
2021 Mark KG, Rape M. Ubiquitin-dependent regulation of transcription in development and disease. Embo Reports. e51078. PMID 33779035 DOI: 10.15252/embr.202051078  0.602
2021 Wolpaw AJ, Bayliss R, Büchel G, Dang CV, Eilers M, Gustafson WC, Hansen GM, Jura N, Knapp S, Lemmon MA, Levens D, Maris JM, Marmorstein R, Metallo SJ, Park JR, ... ... Rape M, et al. Drugging the 'undruggable' MYCN oncogenic transcription factor: Overcoming previous obstacles to impact childhood cancers. Cancer Research. PMID 33509943 DOI: 10.1158/0008-5472.CAN-20-3108  0.549
2020 Mena EL, Jevtić P, Greber BJ, Gee CL, Lew BG, Akopian D, Nogales E, Kuriyan J, Rape M. Structural basis for dimerization quality control. Nature. PMID 32814905 DOI: 10.1038/S41586-020-2636-7  0.593
2020 Oh E, Mark KG, Mocciaro A, Watson ER, Prabu JR, Cha DD, Kampmann M, Gamarra N, Zhou CY, Rape M. Gene expression and cell identity controlled by anaphase-promoting complex. Nature. PMID 32076268 DOI: 10.1038/S41586-020-2034-1  0.686
2020 Baur R, Rape M. Getting Close: Insight into the Structure and Function of K11/K48-Branched Ubiquitin Chains. Structure (London, England : 1993). 28: 1-3. PMID 31951536 DOI: 10.1016/J.Str.2019.12.004  0.35
2019 Engström P, Burke TP, Mitchell G, Ingabire N, Mark KG, Golovkine G, Iavarone AT, Rape M, Cox JS, Welch MD. Evasion of autophagy mediated by Rickettsia surface protein OmpB is critical for virulence. Nature Microbiology. PMID 31611642 DOI: 10.1038/S41564-019-0583-6  0.62
2019 Pao KC, Rape M. Tug of War in the Xenophagy World. Trends in Cell Biology. PMID 31471010 DOI: 10.1016/J.Tcb.2019.08.001  0.311
2019 Haakonsen DL, Rape M. Branching Out: Improved Signaling by Heterotypic Ubiquitin Chains. Trends in Cell Biology. PMID 31300189 DOI: 10.1016/J.Tcb.2019.06.003  0.417
2018 Mena EL, Kjolby RAS, Saxton RA, Werner A, Lew BG, Boyle JM, Harland R, Rape M. Dimerization quality control ensures neuronal development and survival. Science (New York, N.Y.). PMID 30190310 DOI: 10.1126/Science.Aap8236  0.395
2018 Oh E, Akopian D, Rape M. Principles of Ubiquitin-Dependent Signaling. Annual Review of Cell and Developmental Biology. PMID 30110556 DOI: 10.1146/Annurev-Cellbio-100617-062802  0.619
2018 Werner A, Baur R, Teerikorpi N, Kaya DU, Rape M. Multisite dependency of an E3 ligase controls monoubiquitylation-dependent cell fate decisions. Elife. 7. PMID 29999490 DOI: 10.7554/Elife.35407  0.424
2018 Cappell SD, Mark KG, Garbett D, Pack LR, Rape M, Meyer T. EMI1 switches from being a substrate to an inhibitor of APC/C to start the cell cycle. Nature. PMID 29875408 DOI: 10.1038/S41586-018-0199-7  0.652
2018 Werner A, Baur R, Teerikorpi N, Kaya DU, Rape M. Author response: Multisite dependency of an E3 ligase controls monoubiquitylation-dependent cell fate decisions Elife. DOI: 10.7554/Elife.35407.020  0.315
2017 Yau RG, Doerner K, Castellanos ER, Haakonsen DL, Werner A, Wang N, Yang XW, Martinez-Martin N, Matsumoto ML, Dixit VM, Rape M. Assembly and Function of Heterotypic Ubiquitin Chains in Cell-Cycle and Protein Quality Control. Cell. PMID 29033132 DOI: 10.1016/J.Cell.2017.09.040  0.45
2017 Rape M. Ubiquitylation at the crossroads of development and disease. Nature Reviews. Molecular Cell Biology. PMID 28928488 DOI: 10.1038/Nrm.2017.83  0.412
2017 Werner A, Manford AG, Rape M. Ubiquitin-Dependent Regulation of Stem Cell Biology. Trends in Cell Biology. PMID 28528988 DOI: 10.1016/J.Tcb.2017.04.002  0.358
2017 Akopian D, Rape M. Conducting the finale of DNA replication. Genes & Development. 31: 226-227. PMID 28270514 DOI: 10.1101/Gad.297184.117  0.569
2017 Roberts AM, Miyamoto DK, Huffman TR, Bateman LA, Ives AN, Heslin MJ, Akopian D, Contreras CM, Rape M, Skibola CF, Nomura DK. Chemoproteomic Screening of Covalent Ligands Reveals UBA5 as a Novel Pancreatic Cancer Target. Acs Chemical Biology. PMID 28186401 DOI: 10.1021/Acschembio.7B00020  0.561
2017 Das T, Park JK, Park J, Kim E, Rape M, Kim EE, Song EJ. USP15 regulates dynamic protein-protein interactions of the spliceosome through deubiquitination of PRP31. Nucleic Acids Research. PMID 28088760 DOI: 10.1093/Nar/Gkw1365  0.419
2016 McGourty CA, Akopian D, Walsh C, Gorur A, Werner A, Schekman R, Bautista D, Rape M. Regulation of the CUL3 Ubiquitin Ligase by a Calcium-Dependent Co-adaptor. Cell. 167: 525-538.e14. PMID 27716508 DOI: 10.1016/J.Cell.2016.09.026  0.585
2016 Yau R, Rape M. The increasing complexity of the ubiquitin code. Nature Cell Biology. 18: 579-86. PMID 27230526 DOI: 10.1038/Ncb3358  0.408
2016 Schaletzky J, Rape M. Getting a Grip on Microtubules. Cell. 164: 836-7. PMID 26919420 DOI: 10.1016/J.Cell.2016.02.016  0.341
2016 Lorenz S, Bhattacharyya M, Feiler C, Rape M, Kuriyan J. Crystal Structure of a Ube2S-Ubiquitin Conjugate. Plos One. 11: e0147550. PMID 26828794 DOI: 10.1371/Journal.Pone.0147550  0.376
2016 Craney A, Kelly A, Jia L, Fedrigo I, Yu H, Rape M. Control of APC/C-dependent ubiquitin chain elongation by reversible phosphorylation. Proceedings of the National Academy of Sciences of the United States of America. PMID 26811472 DOI: 10.1073/Pnas.1522423113  0.445
2016 Sommer T, Hoppe T, Rape M. Stefan Jentsch (1955–2016) Cell. 167: 1667-1668. DOI: 10.1016/J.Cell.2016.11.057  0.394
2015 Manford AG, Rape M. Better Safe than Sorry: Interlinked Feedback Loops for Robust Mitophagy. Molecular Cell. 60: 1-2. PMID 26431022 DOI: 10.1016/J.Molcel.2015.09.016  0.3
2015 Werner A, Iwasaki S, McGourty CA, Medina-Ruiz S, Teerikorpi N, Fedrigo I, Ingolia NT, Rape M. Cell-fate determination by ubiquitin-dependent regulation of translation. Nature. 525: 523-7. PMID 26399832 DOI: 10.1038/Nature14978  0.418
2014 Kelly A, Wickliffe KE, Song L, Fedrigo I, Rape M. Ubiquitin chain elongation requires E3-dependent tracking of the emerging conjugate. Molecular Cell. 56: 232-45. PMID 25306918 DOI: 10.1016/J.Molcel.2014.09.010  0.754
2014 Meyer HJ, Rape M. Enhanced protein degradation by branched ubiquitin chains. Cell. 157: 910-21. PMID 24813613 DOI: 10.1016/J.Cell.2014.03.037  0.496
2014 Song L, Craney A, Rape M. Microtubule-dependent regulation of mitotic protein degradation. Molecular Cell. 53: 179-92. PMID 24462202 DOI: 10.1016/J.Molcel.2013.12.022  0.455
2013 Craney A, Rape M. Dynamic regulation of ubiquitin-dependent cell cycle control. Current Opinion in Cell Biology. 25: 704-10. PMID 23890701 DOI: 10.1016/J.Ceb.2013.07.004  0.438
2013 Lorenz S, Cantor AJ, Rape M, Kuriyan J. Macromolecular juggling by ubiquitylation enzymes. Bmc Biology. 11: 65. PMID 23800009 DOI: 10.1186/1741-7007-11-65  0.398
2013 McGourty CA, Rape M. Cullin' PLK1 from kinetochores. Nature Cell Biology. 15: 347-8. PMID 23548928 DOI: 10.1038/Ncb2722  0.311
2013 Williamson A, Werner A, Rape M. The Colossus of ubiquitylation: decrypting a cellular code. Molecular Cell. 49: 591-600. PMID 23438855 DOI: 10.1016/J.Molcel.2013.01.028  0.61
2012 Komander D, Rape M. The ubiquitin code. Annual Review of Biochemistry. 81: 203-29. PMID 22524316 DOI: 10.1146/Annurev-Biochem-060310-170328  0.387
2012 Jin L, Pahuja KB, Wickliffe KE, Gorur A, Baumgärtel C, Schekman R, Rape M. Ubiquitin-dependent regulation of COPII coat size and function. Nature. 482: 495-500. PMID 22358839 DOI: 10.1038/Nature10822  0.723
2012 Mocciaro A, Rape M. Emerging regulatory mechanisms in ubiquitin-dependent cell cycle control. Journal of Cell Science. 125: 255-63. PMID 22357967 DOI: 10.1242/Jcs.091199  0.502
2012 Newton K, Matsumoto ML, Ferrando RE, Wickliffe KE, Rape M, Kelley RF, Dixit VM. Using linkage-specific monoclonal antibodies to analyze cellular ubiquitylation. Methods in Molecular Biology (Clifton, N.J.). 832: 185-96. PMID 22350886 DOI: 10.1007/978-1-61779-474-2_13  0.727
2011 Wickliffe KE, Williamson A, Meyer HJ, Kelly A, Rape M. K11-linked ubiquitin chains as novel regulators of cell division. Trends in Cell Biology. 21: 656-63. PMID 21978762 DOI: 10.1016/J.Tcb.2011.08.008  0.804
2011 Williamson A, Banerjee S, Zhu X, Philipp I, Iavarone AT, Rape M. Regulation of ubiquitin chain initiation to control the timing of substrate degradation. Molecular Cell. 42: 744-57. PMID 21700221 DOI: 10.1016/J.Molcel.2011.04.022  0.666
2011 Meyer HJ, Rape M. Processive ubiquitin chain formation by the anaphase-promoting complex. Seminars in Cell & Developmental Biology. 22: 544-50. PMID 21477659 DOI: 10.1016/J.Semcdb.2011.03.009  0.493
2011 Luna-Vargas MP, Faesen AC, van Dijk WJ, Rape M, Fish A, Sixma TK. Ubiquitin-specific protease 4 is inhibited by its ubiquitin-like domain. Embo Reports. 12: 365-72. PMID 21415856 DOI: 10.1038/Embor.2011.33  0.337
2011 Wickliffe KE, Lorenz S, Wemmer DE, Kuriyan J, Rape M. The mechanism of linkage-specific ubiquitin chain elongation by a single-subunit E2. Cell. 144: 769-81. PMID 21376237 DOI: 10.1016/J.Cell.2011.01.035  0.771
2011 Song L, Rape M. Substrate-specific regulation of ubiquitination by the anaphase-promoting complex. Cell Cycle (Georgetown, Tex.). 10: 52-6. PMID 21191176 DOI: 10.4161/Cc.10.1.14387  0.468
2010 Rape M. Assembly of k11-linked ubiquitin chains by the anaphase-promoting complex. Sub-Cellular Biochemistry. 54: 107-15. PMID 21222277 DOI: 10.1007/978-1-4419-6676-6_9  0.473
2010 Matsumoto ML, Wickliffe KE, Dong KC, Yu C, Bosanac I, Bustos D, Phu L, Kirkpatrick DS, Hymowitz SG, Rape M, Kelley RF, Dixit VM. K11-linked polyubiquitination in cell cycle control revealed by a K11 linkage-specific antibody. Molecular Cell. 39: 477-84. PMID 20655260 DOI: 10.1016/J.Molcel.2010.07.001  0.744
2010 Song EJ, Werner SL, Neubauer J, Stegmeier F, Aspden J, Rio D, Harper JW, Elledge SJ, Kirschner MW, Rape M. The Prp19 complex and the Usp4Sart3 deubiquitinating enzyme control reversible ubiquitination at the spliceosome. Genes & Development. 24: 1434-47. PMID 20595234 DOI: 10.1101/Gad.1925010  0.583
2010 Song L, Rape M. Regulated degradation of spindle assembly factors by the anaphase-promoting complex. Molecular Cell. 38: 369-82. PMID 20471943 DOI: 10.1016/J.Molcel.2010.02.038  0.458
2009 Ye Y, Rape M. Building ubiquitin chains: E2 enzymes at work. Nature Reviews. Molecular Cell Biology. 10: 755-64. PMID 19851334 DOI: 10.1038/Nrm2780  0.444
2009 Williamson A, Wickliffe KE, Mellone BG, Song L, Karpen GH, Rape M. Identification of a physiological E2 module for the human anaphase-promoting complex. Proceedings of the National Academy of Sciences of the United States of America. 106: 18213-8. PMID 19822757 DOI: 10.1073/Pnas.0907887106  0.794
2009 Williamson A, Jin L, Rape M. Preparation of synchronized human cell extracts to study ubiquitination and degradation. Methods in Molecular Biology (Clifton, N.J.). 545: 301-12. PMID 19475397 DOI: 10.1007/978-1-60327-993-2_19  0.63
2009 Rape M. Ubiquitin, infinitely seductive: symposium on the many faces of ubiquitin. Embo Reports. 10: 558-62. PMID 19465892 DOI: 10.1038/Embor.2009.104  0.48
2009 Rape M. A set of surgical chain saws. The Embo Journal. 28: 615-6. PMID 19295498 DOI: 10.1038/Emboj.2009.52  0.335
2009 Wickliffe K, Williamson A, Jin L, Rape M. The multiple layers of ubiquitin-dependent cell cycle control. Chemical Reviews. 109: 1537-48. PMID 19146381 DOI: 10.1021/Cr800414E  0.784
2008 Jin L, Williamson A, Banerjee S, Philipp I, Rape M. Mechanism of ubiquitin-chain formation by the human anaphase-promoting complex. Cell. 133: 653-65. PMID 18485873 DOI: 10.1016/J.Cell.2008.04.012  0.667
2008 Song L, Rape M. Reverse the curse--the role of deubiquitination in cell cycle control. Current Opinion in Cell Biology. 20: 156-63. PMID 18346885 DOI: 10.1016/J.Ceb.2008.01.012  0.435
2007 Rape M. Cell cycle: on-time delivery of Plk1 during cytokinesis. Current Biology : Cb. 17: R506-8. PMID 17610829 DOI: 10.1016/J.Cub.2007.04.032  0.309
2007 Reddy SK, Rape M, Margansky WA, Kirschner MW. Ubiquitination by the anaphase-promoting complex drives spindle checkpoint inactivation. Nature. 446: 921-5. PMID 17443186 DOI: 10.1038/Nature05734  0.693
2007 Stegmeier F, Rape M, Draviam VM, Nalepa G, Sowa ME, Ang XL, McDonald ER, Li MZ, Hannon GJ, Sorger PK, Kirschner MW, Harper JW, Elledge SJ. Anaphase initiation is regulated by antagonistic ubiquitination and deubiquitination activities. Nature. 446: 876-81. PMID 17443180 DOI: 10.1038/Nature05694  0.581
2007 Binné UK, Classon MK, Dick FA, Wei W, Rape M, Kaelin WG, Näär AM, Dyson NJ. Retinoblastoma protein and anaphase-promoting complex physically interact and functionally cooperate during cell-cycle exit. Nature Cell Biology. 9: 225-32. PMID 17187060 DOI: 10.1038/Ncb1532  0.465
2007 Stegmeier F, Rape M, Draviam VM, Nalepa G, Sowa ME, Ang XL, McDonald ER, Li MZ, Hannon GJ, Sorger PK, Kirschner MW, Harper JW, Elledge SJ. Anaphase initiation is regulated by antagonistic ubiquitination and deubiquitination activities Nature. 447: 876-881.  0.49
2006 Rape M, Reddy SK, Kirschner MW. The processivity of multiubiquitination by the APC determines the order of substrate degradation. Cell. 124: 89-103. PMID 16413484 DOI: 10.1016/J.Cell.2005.10.032  0.685
2005 Ayad NG, Rankin S, Ooi D, Rape M, Kirschner MW. Identification of ubiquitin ligase substrates by in vitro expression cloning. Methods in Enzymology. 399: 404-14. PMID 16338372 DOI: 10.1016/S0076-6879(05)99028-9  0.557
2005 Jebanathirajah JA, Pittman JL, Thomson BA, Budnik BA, Kaur P, Rape M, Kirschner M, Costello CE, O'Connor PB. Characterization of a new qQq-FTICR mass spectrometer for post-translational modification analysis and top-down tandem mass spectrometry of whole proteins. Journal of the American Society For Mass Spectrometry. 16: 1985-99. PMID 16271296 DOI: 10.1016/J.Jasms.2005.08.008  0.484
2005 Richly H, Rape M, Braun S, Rumpf S, Hoege C, Jentsch S. A series of ubiquitin binding factors connects CDC48/p97 to substrate multiubiquitylation and proteasomal targeting. Cell. 120: 73-84. PMID 15652483 DOI: 10.1016/J.Cell.2004.11.013  0.668
2004 Rape M, Jentsch S. Productive RUPture: activation of transcription factors by proteasomal processing. Biochimica Et Biophysica Acta. 1695: 209-13. PMID 15571816 DOI: 10.1016/J.Bbamcr.2004.09.022  0.636
2004 Rape M, Kirschner MW. Autonomous regulation of the anaphase-promoting complex couples mitosis to S-phase entry. Nature. 432: 588-95. PMID 15558010 DOI: 10.1038/Nature03023  0.587
2002 Rape M, Jentsch S. Taking a bite: proteasomal protein processing. Nature Cell Biology. 4: E113-6. PMID 11988749 DOI: 10.1038/Ncb0502-E113  0.634
2002 Braun S, Matuschewski K, Rape M, Thoms S, Jentsch S. Role of the ubiquitin-selective CDC48(UFD1/NPL4 )chaperone (segregase) in ERAD of OLE1 and other substrates. The Embo Journal. 21: 615-21. PMID 11847109 DOI: 10.1093/Emboj/21.4.615  0.659
2001 Rape M, Hoppe T, Gorr I, Kalocay M, Richly H, Jentsch S. Mobilization of processed, membrane-tethered SPT23 transcription factor by CDC48(UFD1/NPL4), a ubiquitin-selective chaperone. Cell. 107: 667-77. PMID 11733065 DOI: 10.1016/S0092-8674(01)00595-5  0.645
2001 Hoppe T, Rape M, Jentsch S. Membrane-bound transcription factors: regulated release by RIP or RUP. Current Opinion in Cell Biology. 13: 344-8. PMID 11343906 DOI: 10.1016/S0955-0674(00)00218-0  0.6
2000 Hoppe T, Matuschewski K, Rape M, Schlenker S, Ulrich HD, Jentsch S. Activation of a membrane-bound transcription factor by regulated ubiquitin/proteasome-dependent processing. Cell. 102: 577-86. PMID 11007476 DOI: 10.1016/S0092-8674(00)00080-5  0.729
1998 Scholz C, Mücke M, Rape M, Pecht A, Pahl A, Bang H, Schmid FX. Recognition of protein substrates by the prolyl isomerase trigger factor is independent of proline residues. Journal of Molecular Biology. 277: 723-32. PMID 9533890 DOI: 10.1006/Jmbi.1997.1604  0.345
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