Joanna Wysocka - Publications

Affiliations: 
Chemical Systems biology Stanford University Medical School 

73 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Fueyo R, Judd J, Feschotte C, Wysocka J. Roles of transposable elements in the regulation of mammalian transcription. Nature Reviews. Molecular Cell Biology. PMID 35228718 DOI: 10.1038/s41580-022-00457-y  0.336
2021 Bleckwehl T, Crispatzu G, Schaaf K, Respuela P, Bartusel M, Benson L, Clark SJ, Dorighi KM, Barral A, Laugsch M, van IJcken WFJ, Manzanares M, Wysocka J, Reik W, Rada-Iglesias Á. Enhancer-associated H3K4 methylation safeguards in vitro germline competence. Nature Communications. 12: 5771. PMID 34599190 DOI: 10.1038/s41467-021-26065-6  0.427
2021 Gokhman D, Agoglia RM, Kinnebrew M, Gordon W, Sun D, Bajpai VK, Naqvi S, Chen C, Chan A, Chen C, Petrov DA, Ahituv N, Zhang H, Mishina Y, Wysocka J, et al. Human-chimpanzee fused cells reveal cis-regulatory divergence underlying skeletal evolution. Nature Genetics. PMID 33731941 DOI: 10.1038/s41588-021-00804-3  0.319
2020 Boles NC, Fernandes M, Swigut T, Srinivasan R, Schiff L, Rada-Iglesias A, Wang Q, Saini JS, Kiehl T, Stern JH, Wysocka J, Blenkinsop TA, Temple S. Epigenomic and Transcriptomic Changes During Human RPE EMT in a Stem Cell Model of Epiretinal Membrane Pathogenesis and Prevention by Nicotinamide. Stem Cell Reports. PMID 32243845 DOI: 10.1016/J.Stemcr.2020.03.009  0.402
2020 Srinivasan R, Nady N, Arora N, Hsieh LJ, Swigut T, Narlikar GJ, Wossidlo M, Wysocka J. Zscan4 binds nucleosomal microsatellite DNA and protects mouse two-cell embryos from DNA damage. Science Advances. 6: eaaz9115. PMID 32219172 DOI: 10.1126/Sciadv.Aaz9115  0.41
2020 Sundaram V, Wysocka J. Transposable elements as a potent source of diverse -regulatory sequences in mammalian genomes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190347. PMID 32075564 DOI: 10.1098/Rstb.2019.0347  0.402
2019 Greenberg RS, Long HK, Swigut T, Wysocka J. Single Amino Acid Change Underlies Distinct Roles of H2A.Z Subtypes in Human Syndrome. Cell. 178: 1421-1436.e24. PMID 31491386 DOI: 10.1016/J.Cell.2019.08.002  0.409
2019 Bowen ME, McClendon J, Long HK, Sorayya A, Van Nostrand JL, Wysocka J, Attardi LD. The Spatiotemporal Pattern and Intensity of p53 Activation Dictates Phenotypic Diversity in p53-Driven Developmental Syndromes. Developmental Cell. PMID 31178404 DOI: 10.1016/J.Devcel.2019.05.015  0.314
2019 Weinberg SM, Roosenboom J, Shaffer JR, Shriver MD, Wysocka J, Claes P. Hunting for genes that shape human faces: Initial successes and challenges for the future. Orthodontics & Craniofacial Research. 22: 207-212. PMID 31074157 DOI: 10.1111/Ocr.12268  0.315
2018 Fuentes DR, Swigut T, Wysocka J. Systematic perturbation of retroviral LTRs reveals widespread long-range effects on human gene regulation. Elife. 7. PMID 30070637 DOI: 10.7554/Elife.35989  0.411
2018 Glinsky G, Durruthy-Durruthy J, Wossidlo M, Grow EJ, Weirather JL, Au KF, Wysocka J, Sebastiano V. Single cell expression analysis of primate-specific retroviruses-derived HPAT lincRNAs in viable human blastocysts identifies embryonic cells co-expressing genetic markers of multiple lineages. Heliyon. 4: e00667. PMID 30003161 DOI: 10.1016/J.Heliyon.2018.E00667  0.399
2018 Yan J, Chen SA, Local A, Liu T, Qiu Y, Dorighi KM, Preissl S, Rivera CM, Wang C, Ye Z, Ge K, Hu M, Wysocka J, Ren B. Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers. Cell Research. 28: 387. PMID 29497152 DOI: 10.1038/Cr.2018.18  0.398
2018 Claes P, Roosenboom J, White JD, Swigut T, Sero D, Li J, Lee MK, Zaidi A, Mattern BC, Liebowitz C, Pearson L, González T, Leslie EJ, Carlson JC, Orlova E, ... ... Wysocka J, et al. Genome-wide mapping of global-to-local genetic effects on human facial shape. Nature Genetics. PMID 29459680 DOI: 10.1038/S41588-018-0057-4  0.311
2018 Gu B, Swigut T, Spencley A, Bauer MR, Chung M, Meyer T, Wysocka J. Transcription-coupled changes in nuclear mobility of mammalian cis-regulatory elements. Science (New York, N.Y.). PMID 29371426 DOI: 10.1126/Science.Aao3136  0.372
2018 Calo E, Gu B, Bowen ME, Aryan F, Zalc A, Liang J, Flynn RA, Swigut T, Chang HY, Attardi LD, Wysocka J. Tissue-selective effects of nucleolar stress and rDNA damage in developmental disorders. Nature. PMID 29364875 DOI: 10.1038/Nature25449  0.446
2018 Yan J, Chen SA, Local A, Liu T, Qiu Y, Dorighi KM, Preissl S, Rivera CM, Wang C, Ye Z, Ge K, Hu M, Wysocka J, Ren B. Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers. Cell Research. PMID 29313530 DOI: 10.1038/cr.2018.1  0.469
2018 Fuentes DR, Swigut T, Wysocka J. Author response: Systematic perturbation of retroviral LTRs reveals widespread long-range effects on human gene regulation Elife. DOI: 10.7554/Elife.35989.043  0.357
2017 Liu N, Lee CH, Swigut T, Grow E, Gu B, Bassik M, Wysocka J. Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators. Nature. PMID 29211708 DOI: 10.1038/Nature25179  0.365
2017 Okuno H, Renault Mihara F, Ohta S, Fukuda K, Kurosawa K, Akamatsu W, Sanosaka T, Kohyama J, Hayashi K, Nakajima K, Takahashi T, Wysocka J, Kosaki K, Okano H. CHARGE syndrome modeling using patient-iPSCs reveals defective migration of neural crest cells harboring CHD7 mutations. Elife. 6. PMID 29179815 DOI: 10.7554/Elife.21114  0.309
2017 Bao X, Siprashvili Z, Zarnegar BJ, Shenoy RM, Rios EJ, Nady N, Qu K, Mah A, Webster DE, Rubin AJ, Wozniak GG, Tao S, Wysocka J, Khavari PA. CSNK1a1 Regulates PRMT1 to Maintain the Progenitor State in Self-Renewing Somatic Tissue. Developmental Cell. PMID 28943242 DOI: 10.1016/J.Devcel.2017.08.021  0.391
2017 Dorighi KM, Swigut T, Henriques T, Bhanu NV, Scruggs BS, Nady N, Still CD, Garcia BA, Adelman K, Wysocka J. Mll3 and Mll4 Facilitate Enhancer RNA Synthesis and Transcription from Promoters Independently of H3K4 Monomethylation. Molecular Cell. PMID 28483418 DOI: 10.1016/J.Molcel.2017.04.018  0.53
2017 Nagaraja S, Vitanza NA, Woo PJ, Taylor KR, Liu F, Zhang L, Li M, Meng W, Ponnuswami A, Sun W, Ma J, Hulleman E, Swigut T, Wysocka J, Tang Y, et al. Transcriptional Dependencies in Diffuse Intrinsic Pontine Glioma. Cancer Cell. PMID 28434841 DOI: 10.1016/J.Ccell.2017.03.011  0.455
2017 Yunusov D, Anderson L, DaSilva LF, Wysocka J, Ezashi T, Roberts RM, Verjovski-Almeida S. Corrigendum: HIPSTR and thousands of lncRNAs are heterogeneously expressed in human embryos, primordial germ cells and stable cell lines. Scientific Reports. 7: 44632. PMID 28300214 DOI: 10.1038/Srep44632  0.31
2016 Long HK, Prescott SL, Wysocka J. Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution. Cell. 167: 1170-1187. PMID 27863239 DOI: 10.1016/J.Cell.2016.09.018  0.427
2016 Yunusov D, Anderson L, DaSilva LF, Wysocka J, Ezashi T, Roberts RM, Verjovski-Almeida S. HIPSTR and thousands of lncRNAs are heterogeneously expressed in human embryos, primordial germ cells and stable cell lines. Scientific Reports. 6: 32753. PMID 27605307 DOI: 10.1038/Srep32753  0.401
2016 Flynn RA, Do BT, Rubin AJ, Calo E, Lee B, Kuchelmeister H, Rale M, Chu C, Kool ET, Wysocka J, Khavari PA, Chang HY. 7SK-BAF axis controls pervasive transcription at enhancers. Nature Structural & Molecular Biology. PMID 26878240 DOI: 10.1038/Nsmb.3176  0.444
2016 Respuela P, Nikolić M, Tan M, Frommolt P, Zhao Y, Wysocka J, Rada-Iglesias A. Foxd3 Promotes Exit from Naive Pluripotency through Enhancer Decommissioning and Inhibits Germline Specification. Cell Stem Cell. 18: 118-133. PMID 26748758 DOI: 10.1016/J.Stem.2015.09.010  0.456
2016 Wysocka J. Enhancers and Transcriptional Regulation Blood. 128: SCI-14-SCI-14. DOI: 10.1182/Blood.V128.22.Sci-14.Sci-14  0.515
2015 Durruthy-Durruthy J, Sebastiano V, Wossidlo M, Cepeda D, Cui J, Grow EJ, Davila J, Mall M, Wong WH, Wysocka J, Au KF, Reijo Pera RA. The primate-specific noncoding RNA HPAT5 regulates pluripotency during human preimplantation development and nuclear reprogramming. Nature Genetics. PMID 26595768 DOI: 10.1038/Ng.3449  0.432
2015 Nady N, Gupta A, Ma Z, Swigut T, Koide A, Koide S, Wysocka J. ETO family protein Mtgr1 mediates Prdm14 functions in stem cell maintenance and primordial germ cell formation. Elife. 4. PMID 26523391 DOI: 10.7554/Elife.10150  0.481
2015 Prescott SL, Srinivasan R, Marchetto MC, Grishina I, Narvaiza I, Selleri L, Gage FH, Swigut T, Wysocka J. Enhancer Divergence and cis-Regulatory Evolution in the Human and Chimp Neural Crest. Cell. 163: 68-83. PMID 26365491 DOI: 10.1016/J.Cell.2015.08.036  0.392
2015 Grow EJ, Flynn RA, Chavez SL, Bayless NL, Wossidlo M, Wesche DJ, Martin L, Ware CB, Blish CA, Chang HY, Pera RA, Wysocka J. Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells. Nature. 522: 221-5. PMID 25896322 DOI: 10.1038/Nature14308  0.399
2015 Calo E, Flynn RA, Martin L, Spitale RC, Chang HY, Wysocka J. RNA helicase DDX21 coordinates transcription and ribosomal RNA processing. Nature. 518: 249-53. PMID 25470060 DOI: 10.1038/Nature13923  0.326
2015 Nady N, Gupta A, Ma Z, Swigut T, Koide A, Koide S, Wysocka J. Author response: ETO family protein Mtgr1 mediates Prdm14 functions in stem cell maintenance and primordial germ cell formation Elife. DOI: 10.7554/Elife.10150.033  0.351
2014 Van Nostrand JL, Brady CA, Jung H, Fuentes DR, Kozak MM, Johnson TM, Lin CY, Lin CJ, Swiderski DL, Vogel H, Bernstein JA, Attié-Bitach T, Chang CP, Wysocka J, Martin DM, et al. Inappropriate p53 activation during development induces features of CHARGE syndrome. Nature. 514: 228-32. PMID 25119037 DOI: 10.1038/Nature13585  0.322
2014 Buecker C, Srinivasan R, Wu Z, Calo E, Acampora D, Faial T, Simeone A, Tan M, Swigut T, Wysocka J. Reorganization of enhancer patterns in transition from naive to primed pluripotency. Cell Stem Cell. 14: 838-53. PMID 24905168 DOI: 10.1016/J.Stem.2014.04.003  0.422
2013 Rada-Iglesias A, Prescott SL, Wysocka J. Human genetic variation within neural crest enhancers: molecular and phenotypic implications. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20120360. PMID 23650634 DOI: 10.1098/Rstb.2012.0360  0.434
2013 Calo E, Wysocka J. Modification of enhancer chromatin: what, how, and why? Molecular Cell. 49: 825-37. PMID 23473601 DOI: 10.1016/J.Molcel.2013.01.038  0.511
2013 Snider AC, Leong D, Wang QT, Wysocka J, Yao MW, Scott MP. The chromatin remodeling factor Chd1l is required in the preimplantation embryo. Biology Open. 2: 121-31. PMID 23429299 DOI: 10.1242/Bio.20122949  0.504
2012 Rada-Iglesias A, Bajpai R, Prescott S, Brugmann SA, Swigut T, Wysocka J. Epigenomic annotation of enhancers predicts transcriptional regulators of human neural crest. Cell Stem Cell. 11: 633-48. PMID 22981823 DOI: 10.1016/J.Stem.2012.07.006  0.513
2012 Buecker C, Wysocka J. Enhancers as information integration hubs in development: lessons from genomics. Trends in Genetics : Tig. 28: 276-84. PMID 22487374 DOI: 10.1016/J.Tig.2012.02.008  0.387
2011 Tan M, Luo H, Lee S, Jin F, Yang JS, Montellier E, Buchou T, Cheng Z, Rousseaux S, Rajagopal N, Lu Z, Ye Z, Zhu Q, Wysocka J, Ye Y, et al. Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification. Cell. 146: 1016-28. PMID 21925322 DOI: 10.1016/J.Cell.2011.08.008  0.519
2011 Rada-Iglesias A, Wysocka J. Epigenomics of human embryonic stem cells and induced pluripotent stem cells: insights into pluripotency and implications for disease. Genome Medicine. 3: 36. PMID 21658297 DOI: 10.1186/Gm252  0.404
2011 Wang KC, Yang YW, Liu B, Sanyal A, Corces-Zimmerman R, Chen Y, Lajoie BR, Protacio A, Flynn RA, Gupta RA, Wysocka J, Lei M, Dekker J, Helms JA, Chang HY. A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression. Nature. 472: 120-4. PMID 21423168 DOI: 10.1038/Nature09819  0.438
2011 Ma Z, Swigut T, Valouev A, Rada-Iglesias A, Wysocka J. Sequence-specific regulator Prdm14 safeguards mouse ESCs from entering extraembryonic endoderm fates. Nature Structural & Molecular Biology. 18: 120-7. PMID 21183938 DOI: 10.1038/Nsmb.2000  0.503
2011 Rada-Iglesias A, Bajpai R, Swigut T, Brugmann SA, Flynn RA, Wysocka J. A unique chromatin signature uncovers early developmental enhancers in humans. Nature. 470: 279-83. PMID 21160473 DOI: 10.1038/Nature09692  0.529
2010 Grow EJ, Wysocka J. Flipping MLL1's switch one proline at a time. Cell. 141: 1108-10. PMID 20602992 DOI: 10.1016/J.Cell.2010.06.013  0.329
2010 Bajpai R, Chen DA, Rada-Iglesias A, Zhang J, Xiong Y, Helms J, Chang CP, Zhao Y, Swigut T, Wysocka J. CHD7 cooperates with PBAF to control multipotent neural crest formation. Nature. 463: 958-62. PMID 20130577 DOI: 10.1038/Nature08733  0.468
2010 Zhang J, Chen Y, Zhang Z, Xing G, Wysocka J, Zhao Y. MS/MS/MS reveals false positive identification of histone serine methylation. Journal of Proteome Research. 9: 585-94. PMID 19877717 DOI: 10.1021/Pr900864S  0.32
2009 Peng JC, Valouev A, Swigut T, Zhang J, Zhao Y, Sidow A, Wysocka J. Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells. Cell. 139: 1290-302. PMID 20064375 DOI: 10.1016/J.Cell.2009.12.002  0.545
2009 Swigut T, Wysocka J. Fallen immortals. Cell. 137: 203-5. PMID 19379684 DOI: 10.1016/j.cell.2009.04.008  0.331
2009 Lim DA, Huang YC, Swigut T, Mirick AL, Garcia-Verdugo JM, Wysocka J, Ernst P, Alvarez-Buylla A. Chromatin remodelling factor Mll1 is essential for neurogenesis from postnatal neural stem cells. Nature. 458: 529-33. PMID 19212323 DOI: 10.1038/Nature07726  0.518
2008 Peng J, Wysocka J. It takes a PHD to SUMO. Trends in Biochemical Sciences. 33: 191-4. PMID 18406149 DOI: 10.1016/J.Tibs.2008.02.003  0.504
2007 Lee S, Horn V, Julien E, Liu Y, Wysocka J, Bowerman B, Hengartner MO, Herr W. Epigenetic regulation of histone H3 serine 10 phosphorylation status by HCF-1 proteins in C. elegans and mammalian cells. Plos One. 2: e1213. PMID 18043729 DOI: 10.1371/Journal.Pone.0001213  0.729
2007 Swigut T, Wysocka J. H3K27 demethylases, at long last. Cell. 131: 29-32. PMID 17923085 DOI: 10.1016/J.Cell.2007.09.026  0.347
2007 Tyagi S, Chabes AL, Wysocka J, Herr W. E2F activation of S phase promoters via association with HCF-1 and the MLL family of histone H3K4 methyltransferases. Molecular Cell. 27: 107-19. PMID 17612494 DOI: 10.1016/J.Molcel.2007.05.030  0.673
2007 Ruthenburg AJ, Allis CD, Wysocka J. Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark. Molecular Cell. 25: 15-30. PMID 17218268 DOI: 10.1016/J.Molcel.2006.12.014  0.739
2006 Wysocka J. Identifying novel proteins recognizing histone modifications using peptide pull-down assay. Methods (San Diego, Calif.). 40: 339-43. PMID 17101446 DOI: 10.1016/J.Ymeth.2006.05.028  0.51
2006 Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ. Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature. 442: 91-5. PMID 16728978 DOI: 10.1038/Nature04802  0.637
2006 Wysocka J, Swigut T, Xiao H, Milne TA, Kwon SY, Landry J, Kauer M, Tackett AJ, Chait BT, Badenhorst P, Wu C, Allis CD. A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling. Nature. 442: 86-90. PMID 16728976 DOI: 10.1038/Nature04815  0.674
2006 Wysocka J, Allis CD, Coonrod S. Histone arginine methylation and its dynamic regulation Frontiers in Bioscience. 11: 344-355. PMID 16146736 DOI: 10.2741/1802  0.611
2005 Wysocka J, Milne TA, Allis CD. Taking LSD1 to a new high Cell. 122: 654-658. PMID 16143099 DOI: 10.1016/J.Cell.2005.08.022  0.647
2005 Dou Y, Milne TA, Tackett AJ, Smith ER, Fukuda A, Wysocka J, Allis CD, Chait BT, Hess JL, Roeder RG. Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF. Cell. 121: 873-85. PMID 15960975 DOI: 10.1016/J.Cell.2005.04.031  0.595
2005 Wysocka J, Swigut T, Milne TA, Dou Y, Zhang X, Burlingame AL, Roeder RG, Brivanlou AH, Allis CD. WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development. Cell. 121: 859-72. PMID 15960974 DOI: 10.1016/J.Cell.2005.03.036  0.603
2004 Wang Y, Wysocka J, Perlin JR, Leonelli L, Allis CD, Coonrod SA. Linking covalent histone modifications to epigenetics: The rigidity and plasticity of the marks Cold Spring Harbor Symposia On Quantitative Biology. 69: 161-169. PMID 16117646 DOI: 10.1101/Sqb.2004.69.161  0.626
2004 Wang Y, Wysocka J, Sayegh J, Lee YH, Perlin JR, Leonelli L, Sonbuchner LS, McDonald CH, Cook RG, Dou Y, Roeder RG, Clarke S, Stallcup MR, Allis CD, Coonrod SA. Human PAD4 regulates histone arginine methylation levels via demethylimination. Science (New York, N.Y.). 306: 279-83. PMID 15345777 DOI: 10.1126/Science.1101400  0.648
2004 Yokoyama A, Wang Z, Wysocka J, Sanyal M, Aufiero DJ, Kitabayashi I, Herr W, Cleary ML. Leukemia proto-oncoprotein MLL forms a SET1-like histone methyltransferase complex with menin to regulate Hox gene expression. Molecular and Cellular Biology. 24: 5639-49. PMID 15199122 DOI: 10.1128/Mcb.24.13.5639-5649.2004  0.672
2004 Yokoyama A, Wang Z, Wysocka J, Sanyal M, Aufiero DJ, Kitabayashi I, Herr W, Cleary ML. Leukemia Proto-Oncoprotein MLL Forms a SET1 like Complex with Menin to Regulate Hox Gene Expression. Blood. 104: 2550-2550. DOI: 10.1182/Blood.V104.11.2550.2550  0.673
2003 Wysocka J, Herr W. The herpes simplex virus VP16-induced complex: the makings of a regulatory switch. Trends in Biochemical Sciences. 28: 294-304. PMID 12826401 DOI: 10.1016/S0968-0004(03)00088-4  0.609
2003 Wysocka J, Myers MP, Laherty CD, Eisenman RN, Herr W. Human Sin3 deacetylase and trithorax-related Set1/Ash2 histone H3-K4 methyltransferase are tethered together selectively by the cell-proliferation factor HCF-1. Genes & Development. 17: 896-911. PMID 12670868 DOI: 10.1101/Gad.252103  0.687
2002 Reilly PT, Wysocka J, Herr W. Inactivation of the retinoblastoma protein family can bypass the HCF-1 defect in tsBN67 cell proliferation and cytokinesis. Molecular and Cellular Biology. 22: 6767-78. PMID 12215534 DOI: 10.1128/Mcb.22.19.6767-6778.2002  0.686
2001 Wysocka J, Liu Y, Kobayashi R, Herr W. Developmental and cell-cycle regulation of Caenorhabditis elegans HCF phosphorylation. Biochemistry. 40: 5786-94. PMID 11341844 DOI: 10.1021/Bi010086O  0.586
2001 Wysocka J, Reilly PT, Herr W. Loss of HCF-1-chromatin association precedes temperature-induced growth arrest of tsBN67 cells. Molecular and Cellular Biology. 21: 3820-9. PMID 11340173 DOI: 10.1128/Mcb.21.11.3820-3829.2001  0.73
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