Daniel A. Lim, M.D., Ph.D. - Publications

Affiliations: 
Neurosurgery University of California, San Francisco, San Francisco, CA 
Area:
Adult neurogenesis, neural stem cells

54 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Andersen RE, Hong SJ, Lim JJ, Cui M, Harpur BA, Hwang E, Delgado RN, Ramos AD, Liu SJ, Blencowe BJ, Lim DA. The Long Noncoding RNA Pnky Is a Trans-acting Regulator of Cortical Development In Vivo. Developmental Cell. 49: 632-642.e7. PMID 31112699 DOI: 10.1016/j.devcel.2019.04.032  1
2018 Müller S, Cho A, Liu SJ, Lim DA, Diaz A. CONICS integrates scRNA-seq with DNA sequencing to map gene expression to tumor sub-clones. Bioinformatics (Oxford, England). PMID 29897414 DOI: 10.1093/bioinformatics/bty316  0.56
2017 Müller S, Kohanbash G, Liu SJ, Alvarado B, Carrera D, Bhaduri A, Watchmaker PB, Yagnik G, Di Lullo E, Malatesta M, Amankulor NM, Kriegstein AR, Lim DA, Aghi M, Okada H, et al. Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment. Genome Biology. 18: 234. PMID 29262845 DOI: 10.1186/s13059-017-1362-4  0.56
2017 Nowakowski TJ, Bhaduri A, Pollen AA, Alvarado B, Mostajo-Radji MA, Di Lullo E, Haeussler M, Sandoval-Espinosa C, Liu SJ, Velmeshev D, Ounadjela JR, Shuga J, Wang X, Lim DA, West JA, et al. Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex. Science (New York, N.Y.). 358: 1318-1323. PMID 29217575 DOI: 10.1126/science.aap8809  0.4
2017 Delgado RN, Lim DA. Maintenance of Positional Identity of Neural Progenitors in the Embryonic and Postnatal Telencephalon. Frontiers in Molecular Neuroscience. 10: 373. PMID 29180952 DOI: 10.3389/fnmol.2017.00373  1
2017 Cebrián-Silla A, Alfaro-Cervelló C, Herranz-Pérez V, Kaneko N, Park DH, Sawamoto K, Alvarez-Buylla A, Lim DA, García-Verdugo JM. Unique Organization of the Nuclear Envelope in the Post-natal Quiescent Neural Stem Cells. Stem Cell Reports. PMID 28648897 DOI: 10.1016/j.stemcr.2017.05.024  1
2016 Liu SJ, Horlbeck MA, Cho SW, Birk HS, Malatesta M, He D, Attenello FJ, Villalta JE, Cho MY, Chen Y, Mandegar MA, Olvera MP, Gilbert LA, Conklin BR, Chang HY, ... ... Lim DA, et al. CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. Science (New York, N.Y.). PMID 27980086 DOI: 10.1126/science.aah7111  0.52
2016 Müller S, Liu SJ, Di Lullo E, Malatesta M, Pollen AA, Nowakowski TJ, Kohanbash G, Aghi M, Kriegstein AR, Lim DA, Diaz A. Single-cell sequencing maps gene expression to mutational phylogenies in PDGF- and EGF-driven gliomas. Molecular Systems Biology. 12: 889. PMID 27888226  0.56
2016 Delgado RN, Lu C, Lim DA. Maintenance of neural stem cell regional identity in culture. Neurogenesis (Austin, Tex.). 3: e1187321. PMID 27606338 DOI: 10.1080/23262133.2016.1187321  1
2016 Diaz A, Liu SJ, Sandoval C, Pollen A, Nowakowski TJ, Lim DA, Kriegstein A. SCell: integrated analysis of single-cell RNA-seq data. Bioinformatics (Oxford, England). PMID 27153637 DOI: 10.1093/bioinformatics/btw201  0.56
2016 Liu SJ, Nowakowski TJ, Pollen AA, Lui JH, Horlbeck MA, Attenello FJ, He D, Weissman JS, Kriegstein AR, Diaz AA, Lim DA. Single-cell analysis of long non-coding RNAs in the developing human neocortex. Genome Biology. 17: 67. PMID 27081004 DOI: 10.1186/s13059-016-0932-1  1
2016 Lim DA, Alvarez-Buylla A. The Adult Ventricular-Subventricular Zone (V-SVZ) and Olfactory Bulb (OB) Neurogenesis. Cold Spring Harbor Perspectives in Biology. PMID 27048191 DOI: 10.1101/cshperspect.a018820  1
2015 Ramos AD, Attenello FJ, Lim DA. Uncovering the roles of long noncoding RNAs in neural development and glioma progression. Neuroscience Letters. PMID 26733304 DOI: 10.1016/j.neulet.2015.12.025  1
2015 Pollen AA, Nowakowski TJ, Chen J, Retallack H, Sandoval-Espinosa C, Nicholas CR, Shuga J, Liu SJ, Oldham MC, Diaz A, Lim DA, Leyrat AA, West JA, Kriegstein AR. Molecular Identity of Human Outer Radial Glia during Cortical Development. Cell. 163: 55-67. PMID 26406371 DOI: 10.1016/j.cell.2015.09.004  0.6
2015 Delgado RN, Lim DA. Embryonic Nkx2.1-expressing neural precursor cells contribute to the regional heterogeneity of adult V-SVZ neural stem cells. Developmental Biology. PMID 26387477 DOI: 10.1016/j.ydbio.2015.09.008  1
2015 Lim DA. Transcriptional and epigenetic insights from stem cells and developing tissues. Development (Cambridge, England). 142: 2549-53. PMID 26243867 DOI: 10.1242/dev.122424  1
2015 Rolston JD, Ramos A, Heath S, Englot DJ, Lim DA. Thalamotomy-Like Effects From Partial Removal of a Ventral Intermediate Nucleus Deep Brain Stimulator Lead in a Patient With Essential Tremor: Case Report. Neurosurgery. PMID 26200771 DOI: 10.1227/NEU.0000000000000906  1
2015 Ramos AD, Andersen RE, Liu SJ, Nowakowski TJ, Hong SJ, Gertz CC, Salinas RD, Zarabi H, Kriegstein AR, Lim DA. The long noncoding RNA Pnky regulates neuronal differentiation of embryonic and postnatal neural stem cells. Cell Stem Cell. 16: 439-47. PMID 25800779 DOI: 10.1016/j.stem.2015.02.007  1
2015 Rowland NC, Starr PA, Larson PS, Ostrem JL, Marks WJ, Lim DA. Combining cell transplants or gene therapy with deep brain stimulation for Parkinson's disease. Movement Disorders : Official Journal of the Movement Disorder Society. 30: 190-5. PMID 25521796 DOI: 10.1002/mds.26083  1
2015 Silvestrini MT, Yin D, Martin AJ, Coppes VG, Mann P, Larson PS, Starr PA, Zeng X, Gupta N, Panter SS, Desai TA, Lim DA. Interventional magnetic resonance imaging-guided cell transplantation into the brain with radially branched deployment. Molecular Therapy : the Journal of the American Society of Gene Therapy. 23: 119-29. PMID 25138755 DOI: 10.1038/mt.2014.155  1
2014 Lim DA, Alvarez-Buylla A. Adult neural stem cells stake their ground. Trends in Neurosciences. 37: 563-71. PMID 25223700 DOI: 10.1016/j.tins.2014.08.006  1
2014 Price JD, Park KY, Chen J, Salinas RD, Cho MJ, Kriegstein AR, Lim DA. The Ink4a/Arf locus is a barrier to direct neuronal transdifferentiation. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 12560-7. PMID 25209293 DOI: 10.1523/JNEUROSCI.3159-13.2014  1
2014 Park DH, Hong SJ, Salinas RD, Liu SJ, Sun SW, Sgualdino J, Testa G, Matzuk MM, Iwamori N, Lim DA. Activation of neuronal gene expression by the JMJD3 demethylase is required for postnatal and adult brain neurogenesis. Cell Reports. 8: 1290-9. PMID 25176653 DOI: 10.1016/j.celrep.2014.07.060  0.6
2014 Benitah SA, Bracken A, Dou Y, Huangfu D, Ivanova N, Koseki H, Laurent L, Lim DA, Meshorer E, Pombo A, Sander M, Xu GL. Stem cell epigenetics: looking forward. Cell Stem Cell. 14: 706-9. PMID 25032261 DOI: 10.1016/j.stem.2014.05.011  1
2014 Potts MB, Siu JJ, Price JD, Salinas RD, Cho MJ, Ramos AD, Hahn J, Margeta M, Oldham MC, Lim DA. Analysis of Mll1 deficiency identifies neurogenic transcriptional modules and Brn4 as a factor for direct astrocyte-to-neuron reprogramming. Neurosurgery. 75: 472-82; discussion 4. PMID 24887289 DOI: 10.1227/NEU.0000000000000452  1
2014 Hwang WW, Salinas RD, Siu JJ, Kelley KW, Delgado RN, Paredes MF, Alvarez-Buylla A, Oldham MC, Lim DA. Distinct and separable roles for EZH2 in neurogenic astroglia. Elife. 3: e02439. PMID 24867641 DOI: 10.7554/eLife.02439.001  1
2013 Gonzales-Roybal G, Lim DA. Chromatin-based epigenetics of adult subventricular zone neural stem cells. Frontiers in Genetics. 4: 194. PMID 24115953 DOI: 10.3389/fgene.2013.00194  0.56
2013 Potts MB, Silvestrini MT, Lim DA. Devices for cell transplantation into the central nervous system: Design considerations and emerging technologies. Surgical Neurology International. 4: S22-30. PMID 23653887 DOI: 10.4103/2152-7806.109190  1
2013 Ramos AD, Diaz A, Nellore A, Delgado RN, Park KY, Gonzales-Roybal G, Oldham MC, Song JS, Lim DA. Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo. Cell Stem Cell. 12: 616-28. PMID 23583100 DOI: 10.1016/j.stem.2013.03.003  1
2013 Silvestrini MT, Yin D, Coppes VG, Mann P, Martin AJ, Larson PS, Starr PA, Gupta N, Panter SS, Desai TA, Lim DA. Radially branched deployment for more efficient cell transplantation at the scale of the human brain. Stereotactic and Functional Neurosurgery. 91: 92-103. PMID 23343609 DOI: 10.1159/000343213  1
2012 Gupta N, Henry RG, Strober J, Kang SM, Lim DA, Bucci M, Caverzasi E, Gaetano L, Mandelli ML, Ryan T, Perry R, Farrell J, Jeremy RJ, Ulman M, Huhn SL, et al. Neural stem cell engraftment and myelination in the human brain. Science Translational Medicine. 4: 155ra137. PMID 23052294 DOI: 10.1126/scitranslmed.3004373  1
2012 Potts MB, Lim DA. An old drug for new ideas: metformin promotes adult neurogenesis and spatial memory formation. Cell Stem Cell. 11: 5-6. PMID 22770236 DOI: 10.1016/j.stem.2012.06.003  0.44
2012 Diaz A, Park K, Lim DA, Song JS. Normalization, bias correction, and peak calling for ChIP-seq. Statistical Applications in Genetics and Molecular Biology. 11: Article 9. PMID 22499706 DOI: 10.1515/1544-6115.1750  0.56
2012 Crowell AL, Ryapolova-Webb ES, Ostrem JL, Galifianakis NB, Shimamoto S, Lim DA, Starr PA. Oscillations in sensorimotor cortex in movement disorders: an electrocorticography study. Brain : a Journal of Neurology. 135: 615-30. PMID 22252995 DOI: 10.1093/brain/awr332  1
2010 Johnston MA, Lim DA. Keeping them quiet: BMPs maintain adult neural stem cell quiescence. Cell Stem Cell. 7: 9-10. PMID 20621042 DOI: 10.1016/j.stem.2010.06.006  1
2009 Oh MC, Lim DA. Novel treatment strategies for malignant gliomas using neural stem cells. Neurotherapeutics : the Journal of the American Society For Experimental Neurotherapeutics. 6: 458-64. PMID 19560736 DOI: 10.1016/j.nurt.2009.05.003  1
2009 Lim DA, Huang YC, Swigut T, Mirick AL, Garcia-Verdugo JM, Wysocka J, Ernst P, Alvarez-Buylla A. Chromatin remodelling factor Mll1 is essential for neurogenesis from postnatal neural stem cells. Nature. 458: 529-33. PMID 19212323 DOI: 10.1038/nature07726  1
2009 Lim DA, Tarapore P, Chang E, Burt M, Chakalian L, Barbaro N, Chang S, Lamborn KR, McDermott MW. Safety and feasibility of switching from phenytoin to levetiracetam monotherapy for glioma-related seizure control following craniotomy: a randomized phase II pilot study. Journal of Neuro-Oncology. 93: 349-54. PMID 19169651 DOI: 10.1007/s11060-008-9781-4  1
2008 Silber J, Lim DA, Petritsch C, Persson AI, Maunakea AK, Yu M, Vandenberg SR, Ginzinger DG, James CD, Costello JF, Bergers G, Weiss WA, Alvarez-Buylla A, Hodgson JG. miR-124 and miR-137 inhibit proliferation of glioblastoma multiforme cells and induce differentiation of brain tumor stem cells. Bmc Medicine. 6: 14. PMID 18577219 DOI: 10.1186/1741-7015-6-14  1
2007 Lim DA, Khandhar SM, Heath S, Ostrem JL, Ringel N, Starr P. Multiple target deep brain stimulation for multiple sclerosis related and poststroke Holmes' tremor. Stereotactic and Functional Neurosurgery. 85: 144-9. PMID 17259750 DOI: 10.1159/000099072  1
2007 Lim DA, Huang YC, Alvarez-Buylla A. The adult neural stem cell niche: lessons for future neural cell replacement strategies. Neurosurgery Clinics of North America. 18: 81-92, ix. PMID 17244556 DOI: 10.1016/j.nec.2006.10.002  1
2006 Lim DA, Suárez-Fariñas M, Naef F, Hacker CR, Menn B, Takebayashi H, Magnasco M, Patil N, Alvarez-Buylla A. In vivo transcriptional profile analysis reveals RNA splicing and chromatin remodeling as prominent processes for adult neurogenesis. Molecular and Cellular Neurosciences. 31: 131-48. PMID 16330219 DOI: 10.1016/j.mcn.2005.10.005  1
2005 Palma V, Lim DA, Dahmane N, Sánchez P, Brionne TC, Herzberg CD, Gitton Y, Carleton A, Alvarez-Buylla A, Ruiz i Altaba A. Sonic hedgehog controls stem cell behavior in the postnatal and adult brain. Development (Cambridge, England). 132: 335-44. PMID 15604099 DOI: 10.1242/dev.01567  1
2004 Alvarez-Buylla A, Lim DA. For the long run: maintaining germinal niches in the adult brain. Neuron. 41: 683-6. PMID 15003168 DOI: 10.1016/S0896-6273(04)00111-4  1
2003 Caporaso GL, Lim DA, Alvarez-Buylla A, Chao MV. Telomerase activity in the subventricular zone of adult mice. Molecular and Cellular Neurosciences. 23: 693-702. PMID 12932448 DOI: 10.1016/S1044-7431(03)00103-9  1
2003 Tramontin AD, García-Verdugo JM, Lim DA, Alvarez-Buylla A. Postnatal development of radial glia and the ventricular zone (VZ): a continuum of the neural stem cell compartment. Cerebral Cortex (New York, N.Y. : 1991). 13: 580-7. PMID 12764031 DOI: 10.1093/cercor/13.6.580  1
2002 Lim DA, Flames N, Collado L, Herrera DG. Investigating the use of primary adult subventricular zone neural precursor cells for neuronal replacement therapies. Brain Research Bulletin. 57: 759-64. PMID 12031272 DOI: 10.1016/S0361-9230(01)00768-7  1
2002 Gritti A, Bonfanti L, Doetsch F, Caille I, Alvarez-Buylla A, Lim DA, Galli R, Verdugo JM, Herrera DG, Vescovi AL. Multipotent neural stem cells reside into the rostral extension and olfactory bulb of adult rodents. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 22: 437-45. PMID 11784788  1
2000 Lim DA, Tramontin AD, Trevejo JM, Herrera DG, García-Verdugo JM, Alvarez-Buylla A. Noggin antagonizes BMP signaling to create a niche for adult neurogenesis. Neuron. 28: 713-26. PMID 11163261 DOI: 10.1016/S0896-6273(00)00148-3  1
2000 Li XC, Jarvis ED, Alvarez-Borda B, Lim DA, Nottebohm F. A relationship between behavior, neurotrophin expression, and new neuron survival. Proceedings of the National Academy of Sciences of the United States of America. 97: 8584-9. PMID 10890902 DOI: 10.1073/pnas.140222497  1
1999 Doetsch F, Caillé I, Lim DA, García-Verdugo JM, Alvarez-Buylla A. Subventricular zone astrocytes are neural stem cells in the adult mammalian brain. Cell. 97: 703-16. PMID 10380923 DOI: 10.1016/S0092-8674(00)80783-7  1
1999 Lim DA, Alvarez-Buylla A. Interaction between astrocytes and adult subventricular zone precursors stimulates neurogenesis. Proceedings of the National Academy of Sciences of the United States of America. 96: 7526-31. PMID 10377448 DOI: 10.1073/pnas.96.13.7526  1
1998 García-Verdugo JM, Doetsch F, Wichterle H, Lim DA, Alvarez-Buylla A. Architecture and cell types of the adult subventricular zone: in search of the stem cells. Journal of Neurobiology. 36: 234-48. PMID 9712307 DOI: 10.1002/(SICI)1097-4695(199808)36:2<234::AID-NEU10>3.0.CO;2-E  1
1997 Lim DA, Fishell GJ, Alvarez-Buylla A. Postnatal mouse subventricular zone neuronal precursors can migrate and differentiate within multiple levels of the developing neuraxis. Proceedings of the National Academy of Sciences of the United States of America. 94: 14832-6. PMID 9405699 DOI: 10.1073/pnas.94.26.14832  1
Show low-probability matches.