| Year |
Citation |
Score |
| 2023 |
Borteçen T, Müller T, Krijgsveld J. An integrated workflow for quantitative analysis of the newly synthesized proteome. Nature Communications. 14: 8237. PMID 38086798 DOI: 10.1038/s41467-023-43919-3 |
0.315 |
|
| 2022 |
Sigismondo G, Papageorgiou DN, Krijgsveld J. Cracking chromatin with proteomics: From chromatome to histone modifications. Proteomics. e2100206. PMID 35633285 DOI: 10.1002/pmic.202100206 |
0.304 |
|
| 2018 |
Cagnetta R, Wong HH, Frese CK, Mallucci GR, Krijgsveld J, Holt CE. Noncanonical Modulation of the eIF2 Pathway Controls an Increase in Local Translation during Neural Wiring. Molecular Cell. PMID 30595434 DOI: 10.1016/j.molcel.2018.11.013 |
0.701 |
|
| 2018 |
Cagnetta R, Frese CK, Shigeoka T, Krijgsveld J, Holt CE. Rapid Cue-Specific Remodeling of the Nascent Axonal Proteome. Neuron. 99: 29-46.e4. PMID 30008298 DOI: 10.1016/j.neuron.2018.06.004 |
0.695 |
|
| 2016 |
Kramer G, Krijgsveld J. Turning Over Paradigms in Protein Decay. Developmental Cell. 39: 284-285. PMID 27825438 DOI: 10.1016/j.devcel.2016.10.018 |
0.34 |
|
| 2016 |
Rafiee MR, Girardot C, Sigismondo G, Krijgsveld J. Expanding the Circuitry of Pluripotency by Selective Isolation of Chromatin-Associated Proteins. Molecular Cell. 64: 624-635. PMID 27773674 DOI: 10.1016/j.molcel.2016.09.019 |
0.366 |
|
| 2016 |
Virant-Klun I, Leicht S, Hughes C, Krijgsveld J. Identification of maturation-specific proteins by single-cell proteomics of human oocytes. Molecular & Cellular Proteomics : McP. PMID 27215607 DOI: 10.1074/mcp.M115.056887 |
0.351 |
|
| 2015 |
Haberkant P, Stein F, Höglinger D, Gerl MJ, Brügger B, Van Veldhoven PP, Krijgsveld J, Gavin AC, Schultz C. Bifunctional Sphingosine for Cell-Based Analysis of Protein-Sphingolipid Interactions. Acs Chemical Biology. PMID 26555438 DOI: 10.1021/acschembio.5b00810 |
0.301 |
|
| 2015 |
Eichelbaum K, Krijgsveld J. Combining pulsed SILAC labeling and click-chemistry for quantitative secretome analysis. Methods in Molecular Biology (Clifton, N.J.). 1174: 101-14. PMID 24947377 DOI: 10.1007/978-1-4939-0944-5_7 |
0.341 |
|
| 2014 |
Kronja I, Whitfield ZJ, Yuan B, Dzeyk K, Kirkpatrick J, Krijgsveld J, Orr-Weaver TL. Quantitative proteomics reveals the dynamics of protein changes during Drosophila oocyte maturation and the oocyte-to-embryo transition. Proceedings of the National Academy of Sciences of the United States of America. 111: 16023-8. PMID 25349405 DOI: 10.1073/pnas.1418657111 |
0.323 |
|
| 2014 |
Eichelbaum K, Krijgsveld J. Rapid temporal dynamics of transcription, protein synthesis, and secretion during macrophage activation. Molecular & Cellular Proteomics : McP. 13: 792-810. PMID 24396086 DOI: 10.1074/mcp.M113.030916 |
0.331 |
|
| 2013 |
Hansson J, Krijgsveld J. Proteomic analysis of cell fate decision. Current Opinion in Genetics & Development. 23: 540-7. PMID 23942315 DOI: 10.1016/j.gde.2013.06.004 |
0.336 |
|
| 2012 |
Hansson J, Rafiee MR, Reiland S, Polo JM, Gehring J, Okawa S, Huber W, Hochedlinger K, Krijgsveld J. Highly coordinated proteome dynamics during reprogramming of somatic cells to pluripotency. Cell Reports. 2: 1579-92. PMID 23260666 DOI: 10.1016/J.Celrep.2012.10.014 |
0.307 |
|
| 2012 |
Hughes C, Krijgsveld J. Developments in quantitative mass spectrometry for the analysis of proteome dynamics. Trends in Biotechnology. 30: 668-76. PMID 23107010 DOI: 10.1016/j.tibtech.2012.09.007 |
0.332 |
|
| 2012 |
Eichelbaum K, Winter M, Berriel Diaz M, Herzig S, Krijgsveld J. Selective enrichment of newly synthesized proteins for quantitative secretome analysis. Nature Biotechnology. 30: 984-90. PMID 23000932 DOI: 10.1038/nbt.2356 |
0.364 |
|
| 2012 |
Klimmeck D, Hansson J, Raffel S, Vakhrushev SY, Trumpp A, Krijgsveld J. Proteomic cornerstones of hematopoietic stem cell differentiation: distinct signatures of multipotent progenitors and myeloid committed cells. Molecular & Cellular Proteomics : McP. 11: 286-302. PMID 22454540 DOI: 10.1074/mcp.M111.016790 |
0.327 |
|
| 2012 |
van Hoof D, Krijgsveld J, Mummery C. Proteomic analysis of stem cell differentiation and early development. Cold Spring Harbor Perspectives in Biology. 4. PMID 22317846 DOI: 10.1101/cshperspect.a008177 |
0.303 |
|
| 2011 |
De Vos D, Frederiks F, Terweij M, van Welsem T, Verzijlbergen KF, Iachina E, de Graaf EL, Altelaar AF, Oudgenoeg G, Heck AJ, Krijgsveld J, Bakker BM, van Leeuwen F. Progressive methylation of ageing histones by Dot1 functions as a timer. Embo Reports. 12: 956-62. PMID 21760613 DOI: 10.1038/Embor.2011.131 |
0.398 |
|
| 2010 |
Van Hoof D, Dormeyer W, Braam SR, Passier R, Monshouwer-Kloots J, Ward-van Oostwaard D, Heck AJ, Krijgsveld J, Mummery CL. Identification of cell surface proteins for antibody-based selection of human embryonic stem cell-derived cardiomyocytes. Journal of Proteome Research. 9: 1610-8. PMID 20088484 DOI: 10.1021/Pr901138A |
0.516 |
|
| 2010 |
Barbu IM, Smith DF, van Breukelen B, van der Burgt YE, Duursma MC, Heck AJ, Heeren RM, Krijgsveld J. On-the-fly targeted selection of labeled peptides in liquid chromatography/mass spectrometry based quantitative proteomics. Rapid Communications in Mass Spectrometry : Rcm. 24: 239-41. PMID 20013948 DOI: 10.1002/Rcm.4385 |
0.423 |
|
| 2010 |
Puts CF, Lenoir G, Krijgsveld J, Williamson P, Holthuis JC. A P4-ATPase protein interaction network reveals a link between aminophospholipid transport and phosphoinositide metabolism. Journal of Proteome Research. 9: 833-42. PMID 19968326 DOI: 10.1021/Pr900743B |
0.327 |
|
| 2010 |
Gouw JW, Krijgsveld J, Heck AJ. Quantitative proteomics by metabolic labeling of model organisms. Molecular & Cellular Proteomics : McP. 9: 11-24. PMID 19955089 DOI: 10.1074/Mcp.R900001-Mcp200 |
0.516 |
|
| 2010 |
Tops BB, Gauci S, Heck AJ, Krijgsveld J. Worms from venus and mars: proteomics profiling of sexual differences in Caenorhabditis elegans using in vivo 15N isotope labeling. Journal of Proteome Research. 9: 341-51. PMID 19916504 DOI: 10.1021/Pr900678J |
0.523 |
|
| 2009 |
Van Hoof D, Muñoz J, Braam SR, Pinkse MW, Linding R, Heck AJ, Mummery CL, Krijgsveld J. Phosphorylation dynamics during early differentiation of human embryonic stem cells. Cell Stem Cell. 5: 214-26. PMID 19664995 DOI: 10.1016/J.Stem.2009.05.021 |
0.522 |
|
| 2009 |
Gauci S, Veenhoff LM, Heck AJ, Krijgsveld J. Orthogonal separation techniques for the characterization of the yeast nuclear proteome. Journal of Proteome Research. 8: 3451-63. PMID 19453177 DOI: 10.1021/Pr9000948 |
0.539 |
|
| 2009 |
Gauci S, Helbig AO, Slijper M, Krijgsveld J, Heck AJ, Mohammed S. Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. Analytical Chemistry. 81: 4493-501. PMID 19413330 DOI: 10.1021/Ac9004309 |
0.449 |
|
| 2009 |
De Vries E, Bakker N, Krijgsveld J, Knox DP, Heck AJ, Yatsuda AP. An AC-5 cathepsin B-like protease purified from Haemonchus contortus excretory secretory products shows protective antigen potential for lambs. Veterinary Research. 40: 41. PMID 19401141 DOI: 10.1051/Vetres/2009025 |
0.414 |
|
| 2009 |
Tsaytler PA, Krijgsveld J, Goerdayal SS, Rüdiger S, Egmond MR. Novel Hsp90 partners discovered using complementary proteomic approaches. Cell Stress & Chaperones. 14: 629-38. PMID 19396626 DOI: 10.1007/s12192-009-0115-z |
0.325 |
|
| 2009 |
Santema W, Overdijk M, Barends J, Krijgsveld J, Rutten V, Koets A. Searching for proteins of Mycobacterium avium subspecies paratuberculosis with diagnostic potential by comparative qualitative proteomic analysis of mycobacterial tuberculins. Veterinary Microbiology. 138: 191-6. PMID 19349126 DOI: 10.1016/j.vetmic.2009.03.021 |
0.333 |
|
| 2009 |
Gouw JW, Pinkse MW, Vos HR, Moshkin Y, Verrijzer CP, Heck AJ, Krijgsveld J. In vivo stable isotope labeling of fruit flies reveals post-transcriptional regulation in the maternal-to-zygotic transition. Molecular & Cellular Proteomics : McP. 8: 1566-78. PMID 19321433 DOI: 10.1074/Mcp.M900114-Mcp200 |
0.546 |
|
| 2009 |
Gauci S, van Breukelen B, Lemeer SM, Krijgsveld J, Heck AJ. A versatile peptide pI calculator for phosphorylated and N-terminal acetylated peptides experimentally tested using peptide isoelectric focusing. Proteomics. 8: 4898-906. PMID 19003858 DOI: 10.1002/Pmic.200800295 |
0.376 |
|
| 2009 |
Dormeyer W, van Hoof D, Mummery CL, Krijgsveld J, Heck AJ. A practical guide for the identification of membrane and plasma membrane proteins in human embryonic stem cells and human embryonal carcinoma cells. Proteomics. 8: 4036-53. PMID 18763709 DOI: 10.1002/Pmic.200800143 |
0.455 |
|
| 2008 |
Van Hoof D, Heck AJ, Krijgsveld J, Mummery CL. Proteomics and human embryonic stem cells. Stem Cell Research. 1: 169-82. PMID 19383398 DOI: 10.1016/J.Scr.2008.05.003 |
0.563 |
|
| 2008 |
Gouw JW, Tops BB, Mortensen P, Heck AJ, Krijgsveld J. Optimizing identification and quantitation of 15N-labeled proteins in comparative proteomics. Analytical Chemistry. 80: 7796-803. PMID 18808151 DOI: 10.1021/Ac801249V |
0.494 |
|
| 2008 |
Van Hoof D, Braam SR, Dormeyer W, Ward-van Oostwaard D, Heck AJ, Krijgsveld J, Mummery CL. Feeder-free monolayer cultures of human embryonic stem cells express an epithelial plasma membrane protein profile. Stem Cells (Dayton, Ohio). 26: 2777-81. PMID 18703662 DOI: 10.1634/Stemcells.2008-0365 |
0.453 |
|
| 2008 |
Tsaytler PA, C O'Flaherty M, Sakharov DV, Krijgsveld J, Egmond MR. Immediate protein targets of photodynamic treatment in carcinoma cells. Journal of Proteome Research. 7: 3868-78. PMID 18652502 DOI: 10.1021/pr800189q |
0.314 |
|
| 2008 |
Whetton AD, Williamson AJ, Krijgsveld J, Lee BH, Lemischka I, Oh S, Pera M, Mummery C, Heck AJ. The time is right: proteome biology of stem cells. Cell Stem Cell. 2: 215-7. PMID 18383624 DOI: 10.1016/J.Stem.2008.02.003 |
0.471 |
|
| 2008 |
Krijgsveld J, Whetton AD, Lee B, Lemischka I, Oh S, Pera M, Mummery C, Heck AJ. Proteome biology of stem cells: a new joint HUPO and ISSCR initiative. Molecular & Cellular Proteomics : McP. 7: 204-5. PMID 18178583 DOI: 10.1074/Mcp.H800001-Mcp200 |
0.46 |
|
| 2007 |
Heck AJ, Mummery C, Whetton A, Oh S, Lee B, Pera M, Lemischka I, Krijgsveld J. Proteome biology of stem cells. Stem Cell Research. 1: 7-8. PMID 19383382 DOI: 10.1016/J.Scr.2007.08.001 |
0.436 |
|
| 2007 |
Dormeyer W, Mohammed S, Breukelen Bv, Krijgsveld J, Heck AJ. Targeted analysis of protein termini. Journal of Proteome Research. 6: 4634-45. PMID 17927228 DOI: 10.1021/Pr070375K |
0.531 |
|
| 2007 |
Van Hoof D, Pinkse MW, Oostwaard DW, Mummery CL, Heck AJ, Krijgsveld J. An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative proteomics. Nature Methods. 4: 677-8. PMID 17762871 DOI: 10.1038/Nmeth0907-677 |
0.411 |
|
| 2007 |
Brunner E, Ahrens CH, Mohanty S, Baetschmann H, Loevenich S, Potthast F, Deutsch EW, Panse C, de Lichtenberg U, Rinner O, Lee H, Pedrioli PG, Malmstrom J, Koehler K, Schrimpf S, ... Krijgsveld J, et al. A high-quality catalog of the Drosophila melanogaster proteome. Nature Biotechnology. 25: 576-83. PMID 17450130 DOI: 10.1038/Nbt1300 |
0.56 |
|
| 2006 |
Van Hoof D, Mummery CL, Heck AJ, Krijgsveld J. Embryonic stem cell proteomics. Expert Review of Proteomics. 3: 427-37. PMID 16901201 DOI: 10.1586/14789450.3.4.427 |
0.495 |
|
| 2006 |
Krijgsveld J, Gauci S, Dormeyer W, Heck AJ. In-gel isoelectric focusing of peptides as a tool for improved protein identification. Journal of Proteome Research. 5: 1721-30. PMID 16823980 DOI: 10.1021/Pr0601180 |
0.482 |
|
| 2006 |
Van Hoof D, Passier R, Ward-Van Oostwaard D, Pinkse MW, Heck AJ, Mummery CL, Krijgsveld J. A quest for human and mouse embryonic stem cell-specific proteins. Molecular & Cellular Proteomics : McP. 5: 1261-73. PMID 16600995 DOI: 10.1074/Mcp.M500405-Mcp200 |
0.544 |
|
| 2006 |
Yatsuda AP, Bakker N, Krijgsveld J, Knox DP, Heck AJ, de Vries E. Identification of secreted cysteine proteases from the parasitic nematode Haemonchus contortus detected by biotinylated inhibitors. Infection and Immunity. 74: 1989-93. PMID 16495580 DOI: 10.1128/Iai.74.3.1989-1993.2006 |
0.435 |
|
| 2006 |
Heck AJ, Krijgsveld J. Mass spectrometry-based quantitative proteomics. Expert Review of Proteomics. 1: 317-26. PMID 15966828 DOI: 10.1586/14789450.1.3.317 |
0.514 |
|
| 2005 |
van Balkom BW, van Gestel RA, Brouwers JF, Krijgsveld J, Tielens AG, Heck AJ, van Hellemond JJ. Mass spectrometric analysis of the Schistosoma mansoni tegumental sub-proteome. Journal of Proteome Research. 4: 958-66. PMID 15952743 DOI: 10.1021/pr050036w |
0.479 |
|
| 2005 |
Rodriguez P, Bonte E, Krijgsveld J, Kolodziej KE, Guyot B, Heck AJ, Vyas P, de Boer E, Grosveld F, Strouboulis J. GATA-1 forms distinct activating and repressive complexes in erythroid cells. The Embo Journal. 24: 2354-66. PMID 15920471 DOI: 10.1038/Sj.Emboj.7600702 |
0.424 |
|
| 2005 |
van der Knaap JA, Kumar BR, Moshkin YM, Langenberg K, Krijgsveld J, Heck AJ, Karch F, Verrijzer CP. GMP synthetase stimulates histone H2B deubiquitylation by the epigenetic silencer USP7. Molecular Cell. 17: 695-707. PMID 15749019 DOI: 10.1016/J.Molcel.2005.02.013 |
0.387 |
|
| 2005 |
Neeft M, Wieffer M, de Jong AS, Negroiu G, Metz CH, van Loon A, Griffith J, Krijgsveld J, Wulffraat N, Koch H, Heck AJ, Brose N, Kleijmeer M, van der Sluijs P. Munc13-4 is an effector of rab27a and controls secretion of lysosomes in hematopoietic cells. Molecular Biology of the Cell. 16: 731-41. PMID 15548590 DOI: 10.1091/Mbc.E04-10-0923 |
0.416 |
|
| 2004 |
Everley PA, Krijgsveld J, Zetter BR, Gygi SP. Quantitative cancer proteomics: stable isotope labeling with amino acids in cell culture (SILAC) as a tool for prostate cancer research. Molecular & Cellular Proteomics : McP. 3: 729-35. PMID 15102926 DOI: 10.1074/Mcp.M400021-Mcp200 |
0.451 |
|
| 2004 |
Mohrmann L, Langenberg K, Krijgsveld J, Kal AJ, Heck AJ, Verrijzer CP. Differential targeting of two distinct SWI/SNF-related Drosophila chromatin-remodeling complexes. Molecular and Cellular Biology. 24: 3077-88. PMID 15060132 DOI: 10.1128/Mcb.24.8.3077-3088.2004 |
0.45 |
|
| 2004 |
Houtman R, Krijgsveld J, Kool M, Romijn EP, Redegeld FA, Nijkamp FP, Heck AJ, Humphery-Smith I. Lung proteome alterations in a mouse model for nonallergic asthma. Proteomics. 3: 2008-18. PMID 14625863 DOI: 10.1002/Pmic.200300469 |
0.454 |
|
| 2003 |
Romijn EP, Krijgsveld J, Heck AJ. Recent liquid chromatographic-(tandem) mass spectrometric applications in proteomics. Journal of Chromatography. A. 1000: 589-608. PMID 12877191 DOI: 10.1016/S0021-9673(03)00178-X |
0.466 |
|
| 2003 |
Krijgsveld J, Ketting RF, Mahmoudi T, Johansen J, Artal-Sanz M, Verrijzer CP, Plasterk RH, Heck AJ. Metabolic labeling of C. elegans and D. melanogaster for quantitative proteomics. Nature Biotechnology. 21: 927-31. PMID 12858183 DOI: 10.1038/Nbt848 |
0.514 |
|
| 2003 |
de Boer E, Rodriguez P, Bonte E, Krijgsveld J, Katsantoni E, Heck A, Grosveld F, Strouboulis J. Efficient biotinylation and single-step purification of tagged transcription factors in mammalian cells and transgenic mice. Proceedings of the National Academy of Sciences of the United States of America. 100: 7480-5. PMID 12802011 DOI: 10.1073/Pnas.1332608100 |
0.507 |
|
| 2003 |
Yatsuda AP, Krijgsveld J, Cornelissen AW, Heck AJ, de Vries E. Comprehensive analysis of the secreted proteins of the parasite Haemonchus contortus reveals extensive sequence variation and differential immune recognition. The Journal of Biological Chemistry. 278: 16941-51. PMID 12576473 DOI: 10.1074/Jbc.M212453200 |
0.504 |
|
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