Felix Naef - Publications

2001-2003 EPF Lausanne, Lausanne, Vaud, Switzerland 

86 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Hurni C, Weger BD, Gobet C, Naef F. Comprehensive analysis of the circadian nuclear and cytoplasmic transcriptome in mouse liver. Plos Genetics. 18: e1009903. PMID 35921362 DOI: 10.1371/journal.pgen.1009903  0.346
2021 Gobet C, Naef F. Ribo-DT: An automated pipeline for inferring codon dwell times from ribosome profiling data. Methods (San Diego, Calif.). PMID 34673173 DOI: 10.1016/j.ymeth.2021.10.004  0.325
2021 Phillips NE, Hugues A, Yeung J, Durandau E, Nicolas D, Naef F. The circadian oscillator analysed at the single-transcript level. Molecular Systems Biology. 17: e10135. PMID 33719202 DOI: 10.15252/msb.202010135  0.38
2021 Mermet J, Yeung J, Naef F. Oscillating and stable genome topologies underlie hepatic physiological rhythms during the circadian cycle. Plos Genetics. 17: e1009350. PMID 33524027 DOI: 10.1371/journal.pgen.1009350  0.359
2021 Weger BD, Gobet C, David FPA, Atger F, Martin E, Phillips NE, Charpagne A, Weger M, Naef F, Gachon F. Systematic analysis of differential rhythmic liver gene expression mediated by the circadian clock and feeding rhythms. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33452134 DOI: 10.1073/pnas.2015803118  0.33
2020 Talamanca L, Naef F. How to tell time: advances in decoding circadian phase from omics snapshots. F1000research. 9. PMID 33014340 DOI: 10.12688/F1000Research.26759.1  0.336
2020 Gobet C, Weger BD, Marquis J, Martin E, Neelagandan N, Gachon F, Naef F. Robust landscapes of ribosome dwell times and aminoacyl-tRNAs in response to nutrient stress in liver. Proceedings of the National Academy of Sciences of the United States of America. PMID 32295881 DOI: 10.1073/Pnas.1918145117  0.359
2019 Droin C, Paquet ER, Naef F. Low-dimensional Dynamics of Two Coupled Biological Oscillators. Nature Physics. 15: 1086-1094. PMID 32528550 DOI: 10.1038/S41567-019-0598-1  0.337
2019 Hor CN, Yeung J, Jan M, Emmenegger Y, Hubbard J, Xenarios I, Naef F, Franken P. Sleep-wake-driven and circadian contributions to daily rhythms in gene expression and chromatin accessibility in the murine cortex. Proceedings of the National Academy of Sciences of the United States of America. PMID 31776259 DOI: 10.1073/Pnas.1910590116  0.367
2019 Tidin O, Friman ET, Naef F, Suter DM. Quantitative relationships between SMAD dynamics and target gene activation kinetics in single live cells. Scientific Reports. 9: 5372. PMID 30926874 DOI: 10.1038/S41598-019-41870-2  0.456
2019 Phillips NE, Mandic A, Omidi S, Naef F, Suter DM. Memory and relatedness of transcriptional activity in mammalian cell lineages. Nature Communications. 10: 1208. PMID 30872573 DOI: 10.1038/S41467-019-09189-8  0.453
2018 Gachon F, Yeung J, Naef F. Cross-regulatory circuits linking inflammation, high-fat diet, and the circadian clock. Genes & Development. 32: 1359-1360. PMID 30385518 DOI: 10.1101/Gad.320911.118  0.377
2018 Weger BD, Gobet C, Yeung J, Martin E, Jimenez S, Betrisey B, Foata F, Berger B, Balvay A, Foussier A, Charpagne A, Boizet-Bonhoure B, Chou CJ, Naef F, Gachon F. The Mouse Microbiome Is Required for Sex-Specific Diurnal Rhythms of Gene Expression and Metabolism. Cell Metabolism. PMID 30344015 DOI: 10.1016/J.Cmet.2018.09.023  0.352
2018 Yeung J, Naef F. Rhythms of the Genome: Circadian Dynamics from Chromatin Topology, Tissue-Specific Gene Expression, to Behavior. Trends in Genetics : Tig. PMID 30309754 DOI: 10.1016/J.Tig.2018.09.005  0.427
2018 Alber AB, Paquet ER, Biserni M, Naef F, Suter DM. Single Live Cell Monitoring of Protein Turnover Reveals Intercellular Variability and Cell-Cycle Dependence of Degradation Rates. Molecular Cell. PMID 30146318 DOI: 10.1016/J.Molcel.2018.07.023  0.351
2018 Nicolas D, Zoller B, Suter DM, Naef F. Modulation of transcriptional burst frequency by histone acetylation. Proceedings of the National Academy of Sciences of the United States of America. PMID 29915087 DOI: 10.1073/Pnas.1722330115  0.403
2018 Mermet J, Yeung J, Hurni C, Mauvoisin D, Gustafson K, Jouffe C, Nicolas D, Emmenegger Y, Gobet C, Franken P, Gachon F, Naef F. Clock-dependent chromatin topology modulates circadian transcription and behavior. Genes & Development. PMID 29572261 DOI: 10.1101/Gad.312397.118  0.449
2018 Wang J, Symul L, Yeung J, Gobet C, Sobel J, Lück S, Westermark PO, Molina N, Naef F. Circadian clock-dependent and -independent posttranscriptional regulation underlies temporal mRNA accumulation in mouse liver. Proceedings of the National Academy of Sciences of the United States of America. PMID 29432155 DOI: 10.1073/Pnas.1715225115  0.73
2017 Yeung J, Mermet J, Jouffe C, Marquis J, Charpagne A, Gachon F, Naef F. Transcription factor activity rhythms and tissue-specific chromatin interactions explain circadian gene expression across organs. Genome Research. PMID 29254942 DOI: 10.1101/Gr.222430.117  0.428
2017 Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, ... ... Naef F, et al. Guidelines for Genome-Scale Analysis of Biological Rhythms. Journal of Biological Rhythms. 748730417728663. PMID 29098954 DOI: 10.1177/0748730417728663  0.32
2017 Mauvoisin D, Atger F, Dayon L, Núñez Galindo A, Wang J, Martin E, Da Silva L, Montoliu I, Collino S, Martin FP, Ratajczak J, Cantó C, Kussmann M, Naef F, Gachon F. Circadian and Feeding Rhythms Orchestrate the Diurnal Liver Acetylome. Cell Reports. 20: 1729-1743. PMID 28813682 DOI: 10.1016/J.Celrep.2017.07.065  0.391
2017 Nicolas D, Phillips NE, Naef F. What shapes eukaryotic transcriptional bursting? Molecular Biosystems. PMID 28573295 DOI: 10.1039/C7Mb00154A  0.464
2017 Sobel JA, Krier I, Andersin T, Raghav S, Canella D, Gilardi F, Kalantzi AS, Rey G, Weger B, Gachon F, Dal Peraro M, Hernandez N, Schibler U, Deplancke B, Naef F, et al. Transcriptional regulatory logic of the diurnal cycle in the mouse liver. Plos Biology. 15: e2001069. PMID 28414715 DOI: 10.1371/Journal.Pbio.2001069  0.459
2017 Sharp B, Paquet E, Naef F, Bafna A, Wijnen H. A new promoter element associated with daily time keeping in Drosophila. Nucleic Acids Research. PMID 28407113 DOI: 10.1093/Nar/Gkx268  0.443
2017 Gobet C, Naef F. Ribosome profiling and dynamic regulation of translation in mammals. Current Opinion in Genetics & Development. 43: 120-127. PMID 28363112 DOI: 10.1016/J.Gde.2017.03.005  0.407
2016 Mermet J, Yeung J, Naef F. Systems Chronobiology: Global Analysis of Gene Regulation in a 24-Hour Periodic World. Cold Spring Harbor Perspectives in Biology. PMID 27920039 DOI: 10.1101/Cshperspect.A028720  0.421
2016 Wang J, Mauvoisin D, Martin E, Atger F, Galindo AN, Dayon L, Sizzano F, Palini A, Kussmann M, Waridel P, Quadroni M, Dulić V, Naef F, Gachon F. Nuclear Proteomics Uncovers Diurnal Regulatory Landscapes in Mouse Liver. Cell Metabolism. PMID 27818260 DOI: 10.1016/J.Cmet.2016.10.003  0.425
2016 Gotic I, Omidi S, Fleury-Olela F, Molina N, Naef F, Schibler U. Temperature regulates splicing efficiency of the cold-inducible RNA-binding protein gene Cirbp. Genes & Development. PMID 27633015 DOI: 10.1101/Gad.287094.116  0.732
2016 Bischofberger M, Iacovache I, Boss D, Naef F, van der Goot FG, Molina N. Revealing Assembly of a Pore-Forming Complex Using Single-Cell Kinetic Analysis and Modeling. Biophysical Journal. 110: 1574-81. PMID 27074682 DOI: 10.1016/J.Bpj.2016.02.035  0.683
2015 Atger F, Gobet C, Marquis J, Martin E, Wang J, Weger B, Lefebvre G, Descombes P, Naef F, Gachon F. Circadian and feeding rhythms differentially affect rhythmic mRNA transcription and translation in mouse liver. Proceedings of the National Academy of Sciences of the United States of America. PMID 26554015 DOI: 10.1073/Pnas.1515308112  0.483
2015 Zoller B, Nicolas D, Molina N, Naef F. Structure of silent transcription intervals and noise characteristics of mammalian genes. Molecular Systems Biology. 11: 823. PMID 26215071 DOI: 10.15252/Msb.20156257  0.756
2015 Blanchoud S, Nicolas D, Zoller B, Tidin O, Naef F. CAST: An automated segmentation and tracking tool for the analysis of transcriptional kinetics from single-cell time-lapse recordings. Methods (San Diego, Calif.). 85: 3-11. PMID 25934263 DOI: 10.1016/J.Ymeth.2015.04.023  0.428
2014 Knight B, Kubik S, Ghosh B, Bruzzone MJ, Geertz M, Martin V, Dénervaud N, Jacquet P, Ozkan B, Rougemont J, Maerkl SJ, Naef F, Shore D. Two distinct promoter architectures centered on dynamic nucleosomes control ribosomal protein gene transcription. Genes & Development. 28: 1695-709. PMID 25085421 DOI: 10.1101/Gad.244434.114  0.403
2014 Bieler J, Cannavo R, Gustafson K, Gobet C, Gatfield D, Naef F. Robust synchronization of coupled circadian and cell cycle oscillators in single mammalian cells. Molecular Systems Biology. 10: 739. PMID 25028488 DOI: 10.15252/Msb.20145218  0.362
2014 Hoffmann J, Symul L, Shostak A, Fischer T, Naef F, Brunner M. Non-circadian expression masking clock-driven weak transcription rhythms in U2OS cells. Plos One. 9: e102238. PMID 25007071 DOI: 10.1371/Journal.Pone.0102238  0.496
2014 Quinodoz M, Gobet C, Naef F, Gustafson KB. Characteristic bimodal profiles of RNA polymerase II at thousands of active mammalian promoters. Genome Biology. 15: R85. PMID 24972996 DOI: 10.1186/Gb-2014-15-6-R85  0.463
2014 Bonhoure N, Bounova G, Bernasconi D, Praz V, Lammers F, Canella D, Willis IM, Herr W, Hernandez N, Delorenzi M, Deplancke B, Desvergne B, Guex N, Naef F, Rougemont J, et al. Quantifying ChIP-seq data: A spiking method providing an internal reference for sample-to-sample normalization Genome Research. 24: 1157-1168. PMID 24709819 DOI: 10.1101/Gr.168260.113  0.709
2014 Gilardi F, Migliavacca E, Naldi A, Baruchet M, Canella D, Le Martelot G, Guex N, Desvergne B, Delorenzi M, Deplancke B, Herr W, Naef F, Rougemont J, Schibler U, Andersin T, et al. Genome-Wide Analysis of SREBP1 Activity around the Clock Reveals Its Combined Dependency on Nutrient and Circadian Signals Plos Genetics. 10. PMID 24603613 DOI: 10.1371/journal.pgen.1004155  0.738
2014 Mauvoisin D, Wang J, Jouffe C, Martin E, Atger F, Waridel P, Quadroni M, Gachon F, Naef F. Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver. Proceedings of the National Academy of Sciences of the United States of America. 111: 167-72. PMID 24344304 DOI: 10.1073/Pnas.1314066111  0.409
2013 Molina N, Suter DM, Cannavo R, Zoller B, Gotic I, Naef F. Stimulus-induced modulation of transcriptional bursting in a single mammalian gene. Proceedings of the National Academy of Sciences of the United States of America. 110: 20563-8. PMID 24297917 DOI: 10.1073/Pnas.1312310110  0.742
2013 d'Eysmond T, De Simone A, Naef F. Analysis of precision in chemical oscillators: implications for circadian clocks. Physical Biology. 10: 056005. PMID 24043227 DOI: 10.1088/1478-3975/10/5/056005  0.341
2013 Dénervaud N, Becker J, Delgado-Gonzalo R, Damay P, Rajkumar AS, Unser M, Shore D, Naef F, Maerkl SJ. A chemostat array enables the spatio-temporal analysis of the yeast proteome. Proceedings of the National Academy of Sciences of the United States of America. 110: 15842-7. PMID 24019481 DOI: 10.1073/Pnas.1308265110  0.321
2013 Simicevic J, Schmid AW, Gilardoni PA, Zoller B, Raghav SK, Krier I, Gubelmann C, Lisacek F, Naef F, Moniatte M, Deplancke B. Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomics. Nature Methods. 10: 570-6. PMID 23584187 DOI: 10.1038/Nmeth.2441  0.426
2013 Jouffe C, Cretenet G, Symul L, Martin E, Atger F, Naef F, Gachon F. The circadian clock coordinates ribosome biogenesis. Plos Biology. 11: e1001455. PMID 23300384 DOI: 10.1371/Journal.Pbio.1001455  0.464
2012 Le Martelot G, Canella D, Symul L, Migliavacca E, Gilardi F, Liechti R, Martin O, Harshman K, Delorenzi M, Desvergne B, Herr W, Deplancke B, Schibler U, Rougemont J, Guex N, ... ... Naef F, et al. Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles. Plos Biology. 10: e1001442. PMID 23209382 DOI: 10.1371/Journal.Pbio.1001442  0.451
2012 Stratmann M, Suter DM, Molina N, Naef F, Schibler U. Circadian Dbp transcription relies on highly dynamic BMAL1-CLOCK interaction with E boxes and requires the proteasome. Molecular Cell. 48: 277-87. PMID 22981862 DOI: 10.1016/J.Molcel.2012.08.012  0.759
2012 Morf J, Rey G, Schneider K, Stratmann M, Fujita J, Naef F, Schibler U. Cold-inducible RNA-binding protein modulates circadian gene expression posttranscriptionally. Science (New York, N.Y.). 338: 379-83. PMID 22923437 DOI: 10.1126/Science.1217726  0.467
2012 Rougemont J, Naef F. Computational analysis of protein-DNA interactions from ChIP-seq data. Methods in Molecular Biology (Clifton, N.J.). 786: 263-73. PMID 21938632 DOI: 10.1007/978-1-61779-292-2_16  0.385
2011 Suter DM, Molina N, Naef F, Schibler U. Origins and consequences of transcriptional discontinuity. Current Opinion in Cell Biology. 23: 657-62. PMID 21963300 DOI: 10.1016/J.Ceb.2011.09.004  0.75
2011 Gyurján I, Sonderegger B, Naef F, Duboule D. Analysis of the dynamics of limb transcriptomes during mouse development. Bmc Developmental Biology. 11: 47. PMID 21801425 DOI: 10.1186/1471-213X-11-47  0.4
2011 Bieler J, Pozzorini C, Naef F. Whole-embryo modeling of early segmentation in Drosophila identifies robust and fragile expression domains. Biophysical Journal. 101: 287-96. PMID 21767480 DOI: 10.1016/J.Bpj.2011.05.060  0.386
2011 Suter DM, Molina N, Gatfield D, Schneider K, Schibler U, Naef F. Mammalian genes are transcribed with widely different bursting kinetics. Science (New York, N.Y.). 332: 472-4. PMID 21415320 DOI: 10.1126/Science.1198817  0.759
2011 Rey G, Cesbron F, Rougemont J, Reinke H, Brunner M, Naef F. Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver. Plos Biology. 9: e1000595. PMID 21364973 DOI: 10.1371/Journal.Pbio.1000595  0.461
2010 Stoll G, Bischofberger M, Rougemont J, Naef F. Stabilizing patterning in the Drosophila segment polarity network by selecting models in silico. Bio Systems. 102: 3-10. PMID 20655356 DOI: 10.1016/J.Biosystems.2010.07.014  0.311
2010 Preti M, Ribeyre C, Pascali C, Bosio MC, Cortelazzi B, Rougemont J, Guarnera E, Naef F, Shore D, Dieci G. The telomere-binding protein Tbf1 demarcates snoRNA gene promoters in Saccharomyces cerevisiae. Molecular Cell. 38: 614-20. PMID 20513435 DOI: 10.1016/J.Molcel.2010.04.016  0.444
2009 Parisi F, Sonderegger B, Wirapati P, Delorenzi M, Naef F. Relationship between estrogen receptor alpha location and gene induction reveals the importance of downstream sites and cofactors. Bmc Genomics. 10: 381. PMID 19689805 DOI: 10.1186/1471-2164-10-381  0.371
2009 Parisi F, Koeppl H, Naef F. Network inference by combining biologically motivated regulatory constraints with penalized regression. Annals of the New York Academy of Sciences. 1158: 114-24. PMID 19348637 DOI: 10.1111/J.1749-6632.2008.03751.X  0.315
2009 Hazen SP, Naef F, Quisel T, Gendron JM, Chen H, Ecker JR, Borevitz JO, Kay SA. Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays. Genome Biology. 10: R17. PMID 19210792 DOI: 10.1186/Gb-2009-10-2-R17  0.444
2009 Dibner C, Sage D, Unser M, Bauer C, d'Eysmond T, Naef F, Schibler U. Circadian gene expression is resilient to large fluctuations in overall transcription rates. The Embo Journal. 28: 123-34. PMID 19078963 DOI: 10.1038/Emboj.2008.262  0.491
2008 Rougemont J, Naef F. Stochastic phase oscillator models for circadian clocks. Advances in Experimental Medicine and Biology. 641: 141-9. PMID 18783177 DOI: 10.1007/978-0-387-09794-7_10  0.35
2008 Sauvain MO, Dorr AP, Stevenson B, Quazzola A, Naef F, Wiznerowicz M, Schütz F, Jongeneel V, Duboule D, Spitz F, Trono D. Genotypic features of lentivirus transgenic mice. Journal of Virology. 82: 7111-9. PMID 18463153 DOI: 10.1128/Jvi.00623-08  0.341
2008 Paquet ER, Rey G, Naef F. Modeling an evolutionary conserved circadian cis-element. Plos Computational Biology. 4: e38. PMID 18282089 DOI: 10.1371/Journal.Pcbi.0040038  0.415
2007 Rougemont J, Naef F. Stochastic phase oscillators and circadian bioluminescence recordings. Cold Spring Harbor Symposia On Quantitative Biology. 72: 405-11. PMID 18419298 DOI: 10.1101/Sqb.2007.72.044  0.348
2007 Boothroyd CE, Wijnen H, Naef F, Saez L, Young MW. Integration of light and temperature in the regulation of circadian gene expression in Drosophila. Plos Genetics. 3: e54. PMID 17411344 DOI: 10.1371/Journal.Pgen.0030054  0.404
2007 Rougemont J, Naef F. Dynamical signatures of cellular fluctuations and oscillator stability in peripheral circadian clocks. Molecular Systems Biology. 3: 93. PMID 17353935 DOI: 10.1038/Msb4100130  0.352
2007 Parisi F, Wirapati P, Naef F. Identifying synergistic regulation involving c-Myc and sp1 in human tissues. Nucleic Acids Research. 35: 1098-107. PMID 17264126 DOI: 10.1093/Nar/Gkl1157  0.375
2006 Retelska D, Iseli C, Bucher P, Jongeneel CV, Naef F. Similarities and differences of polyadenylation signals in human and fly. Bmc Genomics. 7: 176. PMID 16836751 DOI: 10.1186/1471-2164-7-176  0.329
2006 Wijnen H, Naef F, Boothroyd C, Claridge-Chang A, Young MW. Control of daily transcript oscillations in Drosophila by light and the circadian clock. Plos Genetics. 2: e39. PMID 16565745 DOI: 10.1371/Journal.Pgen.0020039  0.399
2006 Lim DA, Suárez-Fariñas M, Naef F, Hacker CR, Menn B, Takebayashi H, Magnasco M, Patil N, Alvarez-Buylla A. In vivo transcriptional profile analysis reveals RNA splicing and chromatin remodeling as prominent processes for adult neurogenesis. Molecular and Cellular Neurosciences. 31: 131-48. PMID 16330219 DOI: 10.1016/J.Mcn.2005.10.005  0.728
2006 Naef F, Wijnen H, Magnasco M. Reply to "comment on 'Solving the riddle of the bright mismatches: Labeling and effective binding in oligonucleotide arrays'" Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 73. DOI: 10.1103/Physreve.73.063902  0.575
2005 Naef F. Circadian clocks go in vitro: purely post-translational oscillators in cyanobacteria. Molecular Systems Biology. 1: 2005.0019. PMID 16729054 DOI: 10.1038/Msb4100027  0.414
2005 Naef F, Huelsken J. Cell-type-specific transcriptomics in chimeric models using transcriptome-based masks. Nucleic Acids Research. 33: e111. PMID 16030348 DOI: 10.1093/Nar/Gni104  0.38
2005 Gardner TJ, Naef F, Nottebohm F. Freedom and rules: the acquisition and reprogramming of a bird's learned song. Science (New York, N.Y.). 308: 1046-9. PMID 15890887 DOI: 10.1126/Science.1108214  0.44
2005 Wijnen H, Naef F, Young MW. Molecular and statistical tools for circadian transcript profiling. Methods in Enzymology. 393: 341-65. PMID 15817298 DOI: 10.1016/S0076-6879(05)93015-2  0.357
2005 Schibler U, Naef F. Cellular oscillators: rhythmic gene expression and metabolism. Current Opinion in Cell Biology. 17: 223-9. PMID 15780601 DOI: 10.1016/J.Ceb.2005.01.007  0.415
2004 Nagoshi E, Saini C, Bauer C, Laroche T, Naef F, Schibler U. Circadian gene expression in individual fibroblasts: cell-autonomous and self-sustained oscillators pass time to daughter cells. Cell. 119: 693-705. PMID 15550250 DOI: 10.1016/J.Cell.2004.11.015  0.402
2003 Asmal M, Colgan J, Naef F, Yu B, Lee Y, Magnasco M, Luban J. Production of ribosome components in effector CD4+ T cells is accelerated by TCR stimulation and coordinated by ERK-MAPK. Immunity. 19: 535-48. PMID 14563318 DOI: 10.1016/S1074-7613(03)00268-1  0.62
2003 Naef F, Magnasco MO. Solving the riddle of the bright mismatches: labeling and effective binding in oligonucleotide arrays. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 68: 011906. PMID 12935175 DOI: 10.1103/Physreve.68.011906  0.596
2003 Sato N, Sanjuan IM, Heke M, Uchida M, Naef F, Brivanlou AH. Molecular signature of human embryonic stem cells and its comparison with the mouse. Developmental Biology. 260: 404-13. PMID 12921741 DOI: 10.1016/S0012-1606(03)00256-2  0.312
2003 Hekstra D, Taussig AR, Magnasco M, Naef F. Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays. Nucleic Acids Research. 31: 1962-8. PMID 12655013 DOI: 10.1093/Nar/Gkg283  0.61
2003 Naef F, Socci ND, Magnasco M. A study of accuracy and precision in oligonucleotide arrays: extracting more signal at large concentrations. Bioinformatics (Oxford, England). 19: 178-84. PMID 12538237 DOI: 10.1093/Bioinformatics/19.2.178  0.621
2002 Naef F, Lim DA, Patil N, Magnasco M. DNA hybridization to mismatched templates: a chip study. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 65: 040902. PMID 12005798 DOI: 10.1103/Physreve.65.040902  0.619
2002 Naef F, Hacker CR, Patil N, Magnasco M. Empirical characterization of the expression ratio noise structure in high-density oligonucleotide arrays. Genome Biology. 3: RESEARCH0018. PMID 11983059 DOI: 10.1186/Gb-2002-3-4-Research0018  0.601
2002 Naef F, Hacker CR, Patil N, Magnasco M. Characterization of the expression ratio noise structure in high-density oligonucleotide arrays. Genome Biology. 3: PREPRINT0001. PMID 11806820  0.566
2002 Naef F, Lim DA, Patil N, Magnasco M. DNA hybridization to mismatched templates: A chip study Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 65: 040902/1-040902/4. DOI: 10.1103/PhysRevE.65.040902  0.52
2001 Claridge-Chang A, Wijnen H, Naef F, Boothroyd C, Rajewsky N, Young MW. Circadian regulation of gene expression systems in the Drosophila head. Neuron. 32: 657-71. PMID 11719206 DOI: 10.1016/S0896-6273(01)00515-3  0.449
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