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Yue Wan - Publications

Affiliations: 
Genome Institute of Singapore, Singapore 
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Wang J, Yang L, Cheng A, Tham CY, Tan W, Darmawan J, de Sessions PF, Wan Y. Direct RNA sequencing coupled with adaptive sampling enriches RNAs of interest in the transcriptome. Nature Communications. 15: 481. PMID 38212309 DOI: 10.1038/s41467-023-44656-3  0.564
2024 Wang J, Zhang Y, Zhang T, Tan WT, Lambert F, Darmawan J, Huber R, Wan Y. RNA structure profiling at single-cell resolution reveals new determinants of cell identity. Nature Methods. PMID 38177506 DOI: 10.1038/s41592-023-02128-y  0.607
2023 Liao KC, Xie X, Sundstrom AKB, Lim XN, Tan KK, Zhang Y, Zou J, Bifani AM, Poh HX, Chen JJ, Ng WC, Lim SY, Ooi EE, Sessions OM, Tay Y, ... ... Wan Y, et al. Dengue and Zika RNA-RNA interactomes reveal pro- and anti-viral RNA in human cells. Genome Biology. 24: 279. PMID 38053173 DOI: 10.1186/s13059-023-03110-9  0.605
2023 Chin WX, Kong HY, Zhu IXY, Teo ZY, Faruk R, Lee RCH, Ho SX, Aw ZQ, Yi B, Hou XJ, Tan AKY, Yogarajah T, Huber RG, Cai Y, Wan Y, et al. Flavivirus genome recoding by codon optimisation confers genetically stable in vivo attenuation in both mice and mosquitoes. Plos Pathogens. 19: e1011753. PMID 37883598 DOI: 10.1371/journal.ppat.1011753  0.339
2023 Boon PLS, Martins AS, Lim XN, Enguita FJ, Santos NC, Bond PJ, Wan Y, Martins IC, Huber RG. Dengue Virus Capsid Protein Facilitates Genome Compaction and Packaging. International Journal of Molecular Sciences. 24. PMID 37175867 DOI: 10.3390/ijms24098158  0.519
2023 Mattick JS, Amaral PP, Carninci P, Carpenter S, Chang HY, Chen LL, Chen R, Dean C, Dinger ME, Fitzgerald KA, Gingeras TR, Guttman M, Hirose T, Huarte M, Johnson R, ... ... Wan Y, et al. Long non-coding RNAs: definitions, functions, challenges and recommendations. Nature Reviews. Molecular Cell Biology. PMID 36596869 DOI: 10.1038/s41580-022-00566-8  0.759
2022 Yang SL, Ponti RD, Wan Y, Huber RG. Computational and Experimental Approaches to Study the RNA Secondary Structures of RNA Viruses. Viruses. 14. PMID 36016417 DOI: 10.3390/v14081795  0.591
2022 Xu B, Zhu Y, Cao C, Chen H, Jin Q, Li G, Ma J, Yang SL, Zhao J, Zhu J, Ding Y, Fang X, Jin Y, Kwok CK, Ren A, ... Wan Y, et al. Recent advances in RNA structurome. Science China. Life Sciences. PMID 35717434 DOI: 10.1007/s11427-021-2116-2  0.764
2022 Nguyen TA, Heng JWJ, Kaewsapsak P, Kok EPL, Stanojević D, Liu H, Cardilla A, Praditya A, Yi Z, Lin M, Aw JGA, Ho YY, Peh KLE, Wang Y, Zhong Q, ... ... Wan Y, et al. Direct identification of A-to-I editing sites with nanopore native RNA sequencing. Nature Methods. PMID 35697834 DOI: 10.1038/s41592-022-01513-3  0.586
2021 Wang J, Zhang T, Yu Z, Tan WT, Wen M, Shen Y, Lambert FRP, Huber RG, Wan Y. Genome-wide RNA structure changes during human neurogenesis modulate gene regulatory networks. Molecular Cell. PMID 34655516 DOI: 10.1016/j.molcel.2021.09.027  0.576
2021 Yang SL, DeFalco L, Anderson DE, Zhang Y, Aw JGA, Lim SY, Lim XN, Tan KY, Zhang T, Chawla T, Su Y, Lezhava A, Merits A, Wang LF, Huber RG, ... Wan Y, et al. Comprehensive mapping of SARS-CoV-2 interactions in vivo reveals functional virus-host interactions. Nature Communications. 12: 5113. PMID 34433821 DOI: 10.1038/s41467-021-25357-1  0.565
2021 Aw JGA, Lim SW, Wang JX, Lambert FRP, Tan WT, Shen Y, Zhang Y, Kaewsapsak P, Li C, Ng SB, Vardy LA, Tan MH, Nagarajan N, Wan Y. Publisher Correction: Determination of isoform-specific RNA structure with nanopore long reads. Nature Biotechnology. PMID 33758416 DOI: 10.1038/s41587-021-00889-5  0.603
2020 Aw JGA, Lim SW, Wang JX, Lambert FRP, Tan WT, Shen Y, Zhang Y, Kaewsapsak P, Li C, Ng SB, Vardy LA, Tan MH, Nagarajan N, Wan Y. Author Correction: Determination of isoform-specific RNA structure with nanopore long reads. Nature Biotechnology. PMID 33184479 DOI: 10.1038/s41587-020-00755-w  0.512
2020 Aw JGA, Lim SW, Wang JX, Lambert FRP, Tan WT, Shen Y, Zhang Y, Kaewsapsak P, Li C, Ng SB, Vardy LA, Tan MH, Nagarajan N, Wan Y. Determination of isoform-specific RNA structure with nanopore long reads. Nature Biotechnology. PMID 33106685 DOI: 10.1038/s41587-020-0712-z  0.646
2020 Kudla G, Wan Y, Helwak A. RNA Conformation Capture by Proximity Ligation. Annual Review of Genomics and Human Genetics. PMID 32320281 DOI: 10.1146/Annurev-Genom-120219-073756  0.689
2019 Tan CCS, Maurer-Stroh S, Wan Y, Sessions OM, de Sessions PF. A novel method for the capture-based purification of whole viral native RNA genomes. Amb Express. 9: 45. PMID 30963294 DOI: 10.1186/S13568-019-0772-Y  0.707
2019 Huber RG, Lim XN, Ng WC, Sim AYL, Poh HX, Shen Y, Lim SY, Sundstrom KB, Sun X, Aw JG, Too HK, Boey PH, Wilm A, Chawla T, Choy MM, ... ... Wan Y, et al. Structure mapping of dengue and Zika viruses reveals functional long-range interactions. Nature Communications. 10: 1408. PMID 30926818 DOI: 10.1038/S41467-019-09391-8  0.476
2018 Tapsin S, Sun M, Shen Y, Zhang H, Lim XN, Susanto TT, Yang SL, Zeng GS, Lee J, Lezhava A, Ang EL, Zhang LH, Wang Y, Zhao H, Nagarajan N, ... Wan Y, et al. Genome-wide identification of natural RNA aptamers in prokaryotes and eukaryotes. Nature Communications. 9: 1289. PMID 29599443 DOI: 10.1038/S41467-018-03675-1  0.722
2017 Aw JGA, Shen Y, Nagarajan N, Wan Y. Mapping RNA-RNA Interactions Globally Using Biotinylated Psoralen. Journal of Visualized Experiments : Jove. PMID 28570509 DOI: 10.3791/55255  0.695
2016 Nguyen MN, Sim AY, Wan Y, Madhusudhan MS, Verma C. Topology independent comparison of RNA 3D structures using the CLICK algorithm. Nucleic Acids Research. PMID 27634929 DOI: 10.1093/Nar/Gkw819  0.698
2016 Aw JG, Shen Y, Wilm A, Sun M, Lim XN, Boon KL, Tapsin S, Chan YS, Tan CP, Sim AY, Zhang T, Susanto TT, Fu Z, Nagarajan N, Wan Y. In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation. Molecular Cell. PMID 27184079 DOI: 10.1016/J.Molcel.2016.04.028  0.701
2016 Wan Y, Qu K, Ouyang Z, Chang HY. Genome-Wide Probing of RNA Structures In Vitro Using Nucleases and Deep Sequencing. Methods in Molecular Biology (Clifton, N.J.). 1361: 141-60. PMID 26483021 DOI: 10.1007/978-1-4939-3079-1_9  0.772
2014 Wan Y, Qu K, Zhang QC, Flynn RA, Manor O, Ouyang Z, Zhang J, Spitale RC, Snyder MP, Segal E, Chang HY. Landscape and variation of RNA secondary structure across the human transcriptome. Nature. 505: 706-9. PMID 24476892 DOI: 10.1038/Nature12946  0.776
2013 Ilik IA, Quinn JJ, Georgiev P, Tavares-Cadete F, Maticzka D, Toscano S, Wan Y, Spitale RC, Luscombe N, Backofen R, Chang HY, Akhtar A. Tandem stem-loops in roX RNAs act together to mediate X chromosome dosage compensation in Drosophila. Molecular Cell. 51: 156-73. PMID 23870142 DOI: 10.1016/J.Molcel.2013.07.001  0.737
2013 Wan Y, Qu K, Ouyang Z, Chang HY. Genome-wide mapping of RNA structure using nuclease digestion and high-throughput sequencing. Nature Protocols. 8: 849-69. PMID 23558785 DOI: 10.1038/Nprot.2013.045  0.767
2012 Chisholm KM, Wan Y, Li R, Montgomery KD, Chang HY, West RB. Detection of long non-coding RNA in archival tissue: correlation with polycomb protein expression in primary and metastatic breast carcinoma. Plos One. 7: e47998. PMID 23133536 DOI: 10.1371/Journal.Pone.0047998  0.605
2012 Wan Y, Qu K, Ouyang Z, Kertesz M, Li J, Tibshirani R, Makino DL, Nutter RC, Segal E, Chang HY. Genome-wide measurement of RNA folding energies. Molecular Cell. 48: 169-81. PMID 22981864 DOI: 10.1016/J.Molcel.2012.08.008  0.772
2011 Wan Y, Kertesz M, Spitale RC, Segal E, Chang HY. Understanding the transcriptome through RNA structure. Nature Reviews. Genetics. 12: 641-55. PMID 21850044 DOI: 10.1038/Nrg3049  0.794
2010 Wan Y, Chang HY. HOTAIR: Flight of noncoding RNAs in cancer metastasis. Cell Cycle (Georgetown, Tex.). 9: 3391-2. PMID 20864820 DOI: 10.4161/Cc.9.17.13122  0.524
2010 Kertesz M, Wan Y, Mazor E, Rinn JL, Nutter RC, Chang HY, Segal E. Genome-wide measurement of RNA secondary structure in yeast. Nature. 467: 103-7. PMID 20811459 DOI: 10.1038/Nature09322  0.779
2010 Tsai MC, Manor O, Wan Y, Mosammaparast N, Wang JK, Lan F, Shi Y, Segal E, Chang HY. Long noncoding RNA as modular scaffold of histone modification complexes. Science (New York, N.Y.). 329: 689-93. PMID 20616235 DOI: 10.1126/Science.1192002  0.56
2010 Kertesz M, Wan Y, Mazor E, Rinn J, Nutter R, Chang H, Segal E. Probing RNA structure genome-wide using high throughput sequencing Nature Protocols. DOI: 10.1038/Nprot.2010.152  0.741
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