Year |
Citation |
Score |
2023 |
Viswan NA, Bhalla US. Understanding molecular signaling cascades in neural disease using multi-resolution models. Current Opinion in Neurobiology. 83: 102808. PMID 37972535 DOI: 10.1016/j.conb.2023.102808 |
0.794 |
|
2023 |
Asopa A, Bhalla US. A computational view of short-term plasticity and its implications for E-I balance. Current Opinion in Neurobiology. 81: 102729. PMID 37245258 DOI: 10.1016/j.conb.2023.102729 |
0.773 |
|
2023 |
Ananthamurthy KG, Bhalla US. Synthetic Data Resource and Benchmarks for Time Cell Analysis and Detection Algorithms. Eneuro. 10. PMID 36823166 DOI: 10.1523/ENEURO.0007-22.2023 |
0.742 |
|
2022 |
Eriksson O, Bhalla US, Blackwell KT, Crook SM, Keller D, Kramer A, Linne ML, Saudargienė A, Wade RC, Hellgren Kotaleski J. Combining hypothesis- and data-driven neuroscience modeling in FAIR workflows. Elife. 11. PMID 35792600 DOI: 10.7554/eLife.69013 |
0.556 |
|
2021 |
Bhatia A, Moza S, Bhalla US. Correction: Precise excitation-inhibition balance controls gain and timing in the hippocampus. Elife. 10. PMID 34165427 DOI: 10.7554/eLife.71338 |
0.756 |
|
2021 |
Bhatia A, Moza S, Bhalla US. Patterned Optogenetic Stimulation Using a DMD Projector. Methods in Molecular Biology (Clifton, N.J.). 2191: 173-188. PMID 32865745 DOI: 10.1007/978-1-0716-0830-2_11 |
0.767 |
|
2019 |
Bhatia A, Moza S, Bhalla US. Precise excitation-inhibition balance controls gain and timing in the hippocampus. Elife. 8. PMID 31021319 DOI: 10.7554/Elife.43415 |
0.784 |
|
2019 |
Bhatia A, Moza S, Bhalla US. Author response: Precise excitation-inhibition balance controls gain and timing in the hippocampus Elife. DOI: 10.7554/Elife.43415.030 |
0.759 |
|
2018 |
Singh D, Bhalla US. Subunit exchange enhances information retention by CaMKII in dendritic spines. Elife. 7. PMID 30418153 DOI: 10.7554/eLife.41412 |
0.314 |
|
2018 |
Viswan NA, HarshaRani GV, Stefan MI, Bhalla US. FindSim: A Framework for Integrating Neuronal Data and Signaling Models. Frontiers in Neuroinformatics. 12: 38. PMID 29997492 DOI: 10.3389/Fninf.2018.00038 |
0.8 |
|
2017 |
Bhalla US. Dendrites, Deep Learning, and Sequences in the Hippocampus. Hippocampus. PMID 29024221 DOI: 10.1002/hipo.22806 |
0.347 |
|
2017 |
Bhalla US. Synaptic input sequence discrimination on behavioral timescales mediated by reaction-diffusion chemistry in dendrites. Elife. 6. PMID 28422010 DOI: 10.7554/eLife.25827 |
0.381 |
|
2017 |
Brocke E, Djurfeldt M, Bhalla US, Kotaleski JH, Hanke M. Multirate method for co-simulation of electrical-chemical systems in multiscale modeling. Journal of Computational Neuroscience. PMID 28389716 DOI: 10.1007/S10827-017-0639-7 |
0.369 |
|
2016 |
Brocke E, Bhalla US, Djurfeldt M, Hellgren Kotaleski J, Hanke M. Efficient Integration of Coupled Electrical-Chemical Systems in Multiscale Neuronal Simulations. Frontiers in Computational Neuroscience. 10: 97. PMID 27672364 DOI: 10.3389/Fncom.2016.00097 |
0.345 |
|
2016 |
Nair AG, Bhalla US, Hellgren Kotaleski J. Role of DARPP-32 and ARPP-21 in the Emergence of Temporal Constraints on Striatal Calcium and Dopamine Integration. Plos Computational Biology. 12: e1005080. PMID 27584878 DOI: 10.1371/journal.pcbi.1005080 |
0.321 |
|
2015 |
Muthmann JO, Amin H, Sernagor E, Maccione A, Panas D, Berdondini L, Bhalla US, Hennig MH. Spike Detection for Large Neural Populations Using High Density Multielectrode Arrays. Frontiers in Neuroinformatics. 9: 28. PMID 26733859 DOI: 10.3389/Fninf.2015.00028 |
0.33 |
|
2015 |
Ray S, Chintaluri C, Bhalla US, Wójcik DK. NSDF: Neuroscience Simulation Data Format. Neuroinformatics. PMID 26585711 DOI: 10.1007/S12021-015-9282-5 |
0.783 |
|
2015 |
Gilra A, Bhalla US. Bulbar microcircuit model predicts connectivity and roles of interneurons in odor coding. Plos One. 10: e0098045. PMID 25942312 DOI: 10.1371/Journal.Pone.0098045 |
0.8 |
|
2015 |
Gupta P, Albeanu DF, Bhalla US. Olfactory bulb coding of odors, mixtures and sniffs is a linear sum of odor time profiles. Nature Neuroscience. 18: 272-81. PMID 25581362 DOI: 10.1038/Nn.3913 |
0.752 |
|
2014 |
Jain P, Bhalla US. Transcription control pathways decode patterned synaptic inputs into diverse mRNA expression profiles. Plos One. 9: e95154. PMID 24787753 DOI: 10.1371/Journal.Pone.0095154 |
0.761 |
|
2014 |
Bhalla US. Molecular computation in neurons: a modeling perspective. Current Opinion in Neurobiology. 25: 31-7. PMID 24709598 DOI: 10.1016/j.conb.2013.11.006 |
0.401 |
|
2014 |
Modi MN, Dhawale AK, Bhalla US. CA1 cell activity sequences emerge after reorganization of network correlation structure during associative learning. Elife. 3: e01982. PMID 24668171 DOI: 10.7554/Elife.01982 |
0.772 |
|
2014 |
Bhalla US. Multiscale modeling and synaptic plasticity. Progress in Molecular Biology and Translational Science. 123: 351-86. PMID 24560151 DOI: 10.1016/B978-0-12-397897-4.00012-7 |
0.359 |
|
2014 |
Modi MN, Dhawale AK, Bhalla US. Author response: CA1 cell activity sequences emerge after reorganization of network correlation structure during associative learning Elife. DOI: 10.7554/Elife.01982.019 |
0.758 |
|
2013 |
Parthasarathy K, Bhalla US. Laterality and symmetry in rat olfactory behavior and in physiology of olfactory input. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 5750-60. PMID 23536088 DOI: 10.1523/JNEUROSCI.1781-12.2013 |
0.562 |
|
2013 |
Parameshwaran D, Bhalla US. Theta frequency background tunes transmission but not summation of spiking responses. Plos One. 8: e55607. PMID 23383242 DOI: 10.1371/journal.pone.0055607 |
0.794 |
|
2013 |
Muthmann J, Amin H, Maccione A, Sernagor E, Berdondini L, Hennig MH, Bhalla US. Estimating the fraction of falsely detected spikes in high density microelectrode array recordings based on correlations Bmc Neuroscience. 14. DOI: 10.1186/1471-2202-14-S1-P25 |
0.33 |
|
2012 |
Parameshwaran D, Bhalla US. Summation in the Hippocampal CA3-CA1 Network Remains Robustly Linear Following Inhibitory Modulation and Plasticity, but Undergoes Scaling and Offset Transformations. Frontiers in Computational Neuroscience. 6: 71. PMID 23055964 DOI: 10.3389/fncom.2012.00071 |
0.8 |
|
2012 |
Khan AG, Sarangi M, Bhalla US. Rats track odour trails accurately using a multi-layered strategy with near-optimal sampling. Nature Communications. 3: 703. PMID 22426224 DOI: 10.1038/ncomms1712 |
0.517 |
|
2011 |
Bhalla US. Trafficking motifs as the basis for two-compartment signaling systems to form multiple stable states. Biophysical Journal. 101: 21-32. PMID 21723811 DOI: 10.1016/j.bpj.2011.05.037 |
0.336 |
|
2011 |
Bhalla US. Multiscale interactions between chemical and electric signaling in LTP induction, LTP reversal and dendritic excitability. Neural Networks : the Official Journal of the International Neural Network Society. 24: 943-9. PMID 21616637 DOI: 10.1016/j.neunet.2011.05.001 |
0.376 |
|
2011 |
Waltemath D, Adams R, Beard DA, Bergmann FT, Bhalla US, Britten R, Chelliah V, Cooling MT, Cooper J, Crampin EJ, Garny A, Hoops S, Hucka M, Hunter P, Klipp E, et al. Minimum Information About a Simulation Experiment (MIASE). Plos Computational Biology. 7: e1001122. PMID 21552546 DOI: 10.1371/Journal.Pcbi.1001122 |
0.639 |
|
2011 |
Muthmann O, Hennig MH, Bhalla US. Inferring ion channel densities from spike data Bmc Neuroscience. 12. DOI: 10.1186/1471-2202-12-S1-P12 |
0.373 |
|
2010 |
Dhawale AK, Hagiwara A, Bhalla US, Murthy VN, Albeanu DF. Non-redundant odor coding by sister mitral cells revealed by light addressable glomeruli in the mouse. Nature Neuroscience. 13: 1404-12. PMID 20953197 DOI: 10.1038/Nn.2673 |
0.787 |
|
2010 |
Khan AG, Parthasarathy K, Bhalla US. Odor representations in the mammalian olfactory bulb. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 2: 603-11. PMID 20836051 DOI: 10.1002/Wsbm.85 |
0.659 |
|
2010 |
Gleeson P, Crook S, Cannon RC, Hines ML, Billings GO, Farinella M, Morse TM, Davison AP, Ray S, Bhalla US, Barnes SR, Dimitrova YD, Silver RA. NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. Plos Computational Biology. 6: e1000815. PMID 20585541 DOI: 10.1371/Journal.Pcbi.1000815 |
0.807 |
|
2010 |
Djurfeldt M, Hjorth J, Eppler JM, Dudani N, Helias M, Potjans TC, Bhalla US, Diesmann M, Kotaleski JH, Ekeberg O. Run-time interoperability between neuronal network simulators based on the MUSIC framework. Neuroinformatics. 8: 43-60. PMID 20195795 DOI: 10.1007/S12021-010-9064-Z |
0.799 |
|
2010 |
Gilra A, Bhalla US. Biophysical model of odor representation and processing in the rat olfactory bulb Bmc Neuroscience. 11. DOI: 10.1186/1471-2202-11-S1-P63 |
0.788 |
|
2009 |
Jain P, Bhalla US. Signaling logic of activity-triggered dendritic protein synthesis: an mTOR gate but not a feedback switch. Plos Computational Biology. 5: e1000287. PMID 19242559 DOI: 10.1371/Journal.Pcbi.1000287 |
0.763 |
|
2009 |
Dudani N, Ray S, George S, Bhalla US. Multiscale modeling and interoperability in MOOSE Bmc Neuroscience. 10: 54. DOI: 10.1186/1471-2202-10-S1-P54 |
0.78 |
|
2008 |
Dhawale A, Bhalla US. The network and the synapse: 100 years after Cajal. Hfsp Journal. 2: 12-6. PMID 19404449 DOI: 10.2976/1.2835214 |
0.797 |
|
2008 |
Ray S, Bhalla US. PyMOOSE: Interoperable Scripting in Python for MOOSE. Frontiers in Neuroinformatics. 2: 6. PMID 19129924 DOI: 10.3389/Neuro.11.006.2008 |
0.799 |
|
2008 |
Bhalla US. How to record a million synaptic weights in a hippocampal slice. Plos Computational Biology. 4: e1000098. PMID 18566658 DOI: 10.1371/journal.pcbi.1000098 |
0.394 |
|
2008 |
Khan AG, Thattai M, Bhalla US. Odor representations in the rat olfactory bulb change smoothly with morphing stimuli. Neuron. 57: 571-85. PMID 18304486 DOI: 10.1016/j.neuron.2008.01.008 |
0.553 |
|
2008 |
Ray S, Deshpande R, Dudani N, Bhalla US. A general biological simulator: the multiscale object oriented simulation environment, MOOSE Bmc Neuroscience. 9: 93. DOI: 10.1186/1471-2202-9-S1-P93 |
0.752 |
|
2008 |
Bhalla US, Madhavan R, Dhawale A, Modi M, Deshpande R, Dudani N, Ray S. Large-scale synapse-level neuronal wiring diagrams in silico and in vitro Bmc Neuroscience. 9. DOI: 10.1186/1471-2202-9-S1-P20 |
0.753 |
|
2007 |
Ajay SM, Bhalla US. A propagating ERKII switch forms zones of elevated dendritic activation correlated with plasticity. Hfsp Journal. 1: 49-66. PMID 19404460 DOI: 10.2976/1.2721383/10.2976/1 |
0.375 |
|
2007 |
Cannon RC, Gewaltig MO, Gleeson P, Bhalla US, Cornelis H, Hines ML, Howell FW, Muller E, Stiles JR, Wils S, De Schutter E. Interoperability of neuroscience modeling software: current status and future directions. Neuroinformatics. 5: 127-38. PMID 17873374 DOI: 10.1007/S12021-007-0004-5 |
0.571 |
|
2006 |
Ajay SM, Bhalla US. Synaptic plasticity in vitro and in silico: insights into an intracellular signaling maze. Physiology (Bethesda, Md.). 21: 289-96. PMID 16868318 DOI: 10.1152/physiol.00009.2006 |
0.392 |
|
2006 |
Rajan R, Clement JP, Bhalla US. Rats smell in stereo. Science (New York, N.Y.). 311: 666-70. PMID 16456082 DOI: 10.1126/science.1122096 |
0.504 |
|
2005 |
Le Novère N, Finney A, Hucka M, Bhalla US, Campagne F, Collado-Vides J, Crampin EJ, Halstead M, Klipp E, Mendes P, Nielsen P, Sauro H, Shapiro B, Snoep JL, Spence HD, et al. Minimum information requested in the annotation of biochemical models (MIRIAM). Nature Biotechnology. 23: 1509-15. PMID 16333295 DOI: 10.1038/Nbt1156 |
0.631 |
|
2005 |
Hayer A, Bhalla US. Molecular switches at the synapse emerge from receptor and kinase traffic. Plos Computational Biology. 1: 137-54. PMID 16110334 DOI: 10.1371/journal.pcbi.0010020 |
0.317 |
|
2005 |
Rajasethupathy P, Vayttaden SJ, Bhalla US. Systems modeling: a pathway to drug discovery. Current Opinion in Chemical Biology. 9: 400-6. PMID 16006180 DOI: 10.1016/j.cbpa.2005.06.008 |
0.758 |
|
2005 |
HarshaRani GV, Vayttaden SJ, Bhalla US. Electronic data sources for kinetic models of cell signaling. Journal of Biochemistry. 137: 653-7. PMID 16002985 DOI: 10.1093/jb/mvi083 |
0.784 |
|
2004 |
Ajay SM, Bhalla US. A role for ERKII in synaptic pattern selectivity on the time-scale of minutes. The European Journal of Neuroscience. 20: 2671-80. PMID 15548210 DOI: 10.1111/j.1460-9568.2004.03725.x |
0.384 |
|
2004 |
Vayttaden SJ, Ajay SM, Bhalla US. A spectrum of models of signaling pathways. Chembiochem : a European Journal of Chemical Biology. 5: 1365-74. PMID 15457536 DOI: 10.1002/cbic.200400127 |
0.773 |
|
2004 |
Bhalla US. Signaling in small subcellular volumes. II. Stochastic and diffusion effects on synaptic network properties. Biophysical Journal. 87: 745-53. PMID 15298883 DOI: 10.1529/biophysj.104.040501 |
0.369 |
|
2004 |
Bhalla US. Signaling in small subcellular volumes. I. Stochastic and diffusion effects on individual pathways. Biophysical Journal. 87: 733-44. PMID 15298882 DOI: 10.1529/biophysj.104.040469 |
0.307 |
|
2004 |
Bhalla US. Models of cell signaling pathways. Current Opinion in Genetics & Development. 14: 375-81. PMID 15261653 DOI: 10.1016/j.gde.2004.05.002 |
0.374 |
|
2004 |
Vayttaden SJ, Bhalla US. Developing complex signaling models using GENESIS/Kinetikit. Science's Stke : Signal Transduction Knowledge Environment. 2004: pl4. PMID 14872097 DOI: 10.1126/stke.2192004pl4 |
0.799 |
|
2004 |
Vasudeva K, Bhalla US. Adaptive stochastic-deterministic chemical kinetic simulations. Bioinformatics (Oxford, England). 20: 78-84. PMID 14693812 DOI: 10.1093/bioinformatics/btg376 |
0.309 |
|
2003 |
Bhalla US. Temporal computation by synaptic signaling pathways. Journal of Chemical Neuroanatomy. 26: 81-6. PMID 14599656 DOI: 10.1016/S0891-0618(02)00105-9 |
0.403 |
|
2003 |
Deshmukh SS, Bhalla US. Representation of odor habituation and timing in the hippocampus. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 23: 1903-15. PMID 12629195 DOI: 10.1523/Jneurosci.23-05-01903.2003 |
0.614 |
|
2003 |
Sivakumaran S, Hariharaputran S, Mishra J, Bhalla US. The Database of Quantitative Cellular Signaling: management and analysis of chemical kinetic models of signaling networks. Bioinformatics (Oxford, England). 19: 408-15. PMID 12584128 DOI: 10.1093/Bioinformatics/Btf860 |
0.701 |
|
2003 |
Bhalla US. Understanding complex signaling networks through models and metaphors. Progress in Biophysics and Molecular Biology. 81: 45-65. PMID 12475569 DOI: 10.1016/S0079-6107(02)00046-9 |
0.38 |
|
2003 |
Bhalla US. Managing models of signaling networks Neurocomputing. 52: 215-220. DOI: 10.1016/S0925-2312(02)00737-3 |
0.36 |
|
2002 |
Mishra J, Bhalla US. Simulations of inositol phosphate metabolism and its interaction with InsP(3)-mediated calcium release. Biophysical Journal. 83: 1298-316. PMID 12202356 DOI: 10.1016/S0006-3495(02)73901-5 |
0.504 |
|
2002 |
Bhalla US, Ram PT, Iyengar R. MAP kinase phosphatase as a locus of flexibility in a mitogen-activated protein kinase signaling network. Science (New York, N.Y.). 297: 1018-23. PMID 12169734 DOI: 10.1126/science.1068873 |
0.503 |
|
2002 |
Bhalla US. Biochemical signaling networks decode temporal patterns of synaptic input. Journal of Computational Neuroscience. 13: 49-62. PMID 12154335 DOI: 10.1023/A:1019644427655 |
0.37 |
|
2002 |
Bhalla US. Mechanisms for temporal tuning and filtering by postsynaptic signaling pathways. Biophysical Journal. 83: 740-52. PMID 12124261 DOI: 10.1016/S0006-3495(02)75205-3 |
0.37 |
|
2002 |
Bhalla US. The chemical organization of signaling interactions. Bioinformatics (Oxford, England). 18: 855-63. PMID 12075021 DOI: 10.1093/Bioinformatics/18.6.855 |
0.313 |
|
2002 |
Bhalla US. Use of Kinetikit and GENESIS for modeling signaling pathways. Methods in Enzymology. 345: 3-23. PMID 11665614 DOI: 10.1016/S0076-6879(02)45003-3 |
0.348 |
|
2001 |
Bhalla US, Iyengar R. Robustness of the bistable behavior of a biological signaling feedback loop. Chaos (Woodbury, N.Y.). 11: 221-226. PMID 12779455 DOI: 10.1063/1.1350440 |
0.525 |
|
2001 |
Bhalla US, Iyengar R. Functional modules in biological signalling networks. Novartis Foundation Symposium. 239: 4-13; discussion 13-. PMID 11529315 DOI: 10.1002/0470846674.Ch2 |
0.533 |
|
1999 |
Weng G, Bhalla US, Iyengar R. Complexity in biological signaling systems. Science (New York, N.Y.). 284: 92-6. PMID 10102825 DOI: 10.1126/science.284.5411.92 |
0.497 |
|
1999 |
Bhalla US, Iyengar R. Emergent properties of networks of biological signaling pathways. Science (New York, N.Y.). 283: 381-7. PMID 9888852 DOI: 10.1126/science.283.5400.381 |
0.545 |
|
1997 |
Bhalla US, Bower JM. Multiday recordings from olfactory bulb neurons in awake freely moving rats: spatially and temporally organized variability in odorant response properties. Journal of Computational Neuroscience. 4: 221-56. PMID 9257234 DOI: 10.1023/A:1008819818970 |
0.578 |
|
1994 |
Olds JL, Bhalla US, McPhie DL, Lester DS, Bower JM, Alkon DL. Lateralization of membrane-associated protein kinase C in rat piriform cortex: specific to operant training cues in the olfactory modality. Behavioural Brain Research. 61: 37-46. PMID 8031495 DOI: 10.1016/0166-4328(94)90006-X |
0.568 |
|
1993 |
Bhalla US, Bower JM. Exploring parameter space in detailed single neuron models: simulations of the mitral and granule cells of the olfactory bulb. Journal of Neurophysiology. 69: 1948-65. PMID 7688798 DOI: 10.1152/JN.1993.69.6.1948 |
0.568 |
|
1993 |
Bhalla US, Bilitch DH, Bower JM. Erratum: Rallpacks: A set of benchmarks for neuronal simulators (TINS (Vol. 15) (pp. 453-458)) Trends in Neurosciences. 16. DOI: 10.1016/0166-2236(93)90048-Q |
0.337 |
|
1992 |
Bhalla US, Bilitch DH, Bower JM. Rallpacks: a set of benchmarks for neuronal simulators. Trends in Neurosciences. 15: 453-8. PMID 1281353 DOI: 10.1016/0166-2236(92)90009-W |
0.59 |
|
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