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Tae Hoon Kim, Ph.D. - Publications

Affiliations: 
2006-2014 Genetics Yale University School of Medicine, New Haven, CT 
 2014- Biological Sciences University of Texas at Dallas, Richardson, TX, United States 
Area:
Functional Genomics
Website:
https://taehoonkim.org
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45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Choe JH, Mazambani S, Kim TH, Kim JW. Oxidative Stress and the Intersection of Oncogenic Signaling and Metabolism in Squamous Cell Carcinomas. Cells. 10. PMID 33803326 DOI: 10.3390/cells10030606  0.283
2020 Hao Q, Zong X, Sun Q, Lin YC, Song YJ, Hashemikhabir S, Hsu RY, Kamran M, Chaudhary R, Tripathi V, Singh DK, Chakraborty A, Li XL, Kim YJ, Orjalo AV, ... Kim TH, et al. The S-phase-induced lncRNA promotes cell proliferation by controlling YAP1/Hippo signaling pathway. Elife. 9. PMID 33108271 DOI: 10.7554/eLife.55102  0.357
2020 Cha B, Ho YC, Geng X, Mahamud MR, Chen L, Kim Y, Choi D, Kim TH, Randolph GJ, Cao X, Chen H, Srinivasan RS. YAP and TAZ maintain PROX1 expression in the developing lymphatic and lymphovenous valves in response to VEGF-C signaling. Development (Cambridge, England). PMID 33060128 DOI: 10.1242/dev.195453  0.245
2019 Mahamud MR, Geng X, Ho YC, Cha B, Kim Y, Ma J, Chen L, Myers G, Camper S, Mustacich D, Witte M, Choi D, Hong YK, Chen H, Varshney G, ... Kim TH, et al. GATA2 controls lymphatic endothelial cell junctional integrity and lymphovenous valve morphogenesis through . Development (Cambridge, England). PMID 31582413 DOI: 10.1242/Dev.184218  0.303
2019 North RY, Li Y, Ray P, Rhines LD, Tatsui CE, Rao G, Johansson CA, Zhang H, Kim YH, Zhang B, Dussor G, Kim TH, Price TJ, Dougherty PM. Electrophysiological and transcriptomic correlates of neuropathic pain in human dorsal root ganglion neurons. Brain : a Journal of Neurology. PMID 30887021 DOI: 10.1093/brain/awz063  0.29
2018 Kim YJ, Xie P, Cao L, Zhang MQ, Kim TH. Global transcriptional activity dynamics reveal functional enhancer RNAs. Genome Research. PMID 30352805 DOI: 10.1101/Gr.233486.117  0.414
2018 Cha B, Geng X, Mahamud MR, Zhang JY, Chen L, Kim W, Jho EH, Kim Y, Choi D, Dixon JB, Chen H, Hong YK, Olson L, Kim TH, Merrill BJ, et al. Complementary Wnt Sources Regulate Lymphatic Vascular Development via PROX1-Dependent Wnt/β-Catenin Signaling. Cell Reports. 25: 571-584.e5. PMID 30332639 DOI: 10.1016/J.Celrep.2018.09.049  0.285
2018 Kim TH, Dekker J. 3C-Based Chromatin Interaction Analyses. Cold Spring Harbor Protocols. 2018: pdb.top097832. PMID 30181229 DOI: 10.1101/Pdb.Top097832  0.32
2018 Kim TH, Dekker J. Generation of Control Ligation Product Libraries for 3C Analyses. Cold Spring Harbor Protocols. 2018: pdb.prot097865. PMID 30068592 DOI: 10.1101/Pdb.Prot097865  0.317
2018 Kim TH, Dekker J. Generation of ChIP-Loop Libraries. Cold Spring Harbor Protocols. 2018: pdb.prot097857. PMID 30068591 DOI: 10.1101/Pdb.Prot097857  0.291
2018 Zhao YT, Kwon DY, Johnson BS, Fasolino M, Lamonica JM, Kim YJ, Zhao BS, He C, Vahedi G, Kim TH, Zhou Z. Long genes linked to autism spectrum disorders harbor broad enhancer-like chromatin domains. Genome Research. PMID 29848492 DOI: 10.1101/Gr.233775.117  0.541
2018 Kim TH, Dekker J. Chromatin Immunoprecipitation (ChIP) Analysis of Protein-DNA Interactions. Cold Spring Harbor Protocols. 2018: pdb.top082586. PMID 29717056 DOI: 10.1101/Pdb.Top082586  0.378
2018 Kim TH, Dekker J. ChIP-seq. Cold Spring Harbor Protocols. 2018: pdb.prot082644. PMID 29717046 DOI: 10.1101/pdb.prot082644  0.343
2018 Kim TH, Dekker J. ChIP-chip. Cold Spring Harbor Protocols. 2018: pdb.prot082636. PMID 29717045 DOI: 10.1101/pdb.prot082636  0.338
2018 Kim TH, Dekker J. ChIP-Quantitative Polymerase Chain Reaction (ChIP-qPCR). Cold Spring Harbor Protocols. 2018: pdb.prot082628. PMID 29717044 DOI: 10.1101/Pdb.Prot082628  0.356
2018 Kim TH, Dekker J. ChIP. Cold Spring Harbor Protocols. 2018: pdb.prot082610. PMID 29610359 DOI: 10.1101/pdb.prot082610  0.305
2018 Kim TH, Dekker J. Preparation of Cross-Linked Chromatin for ChIP. Cold Spring Harbor Protocols. 2018: pdb.prot082602. PMID 29610358 DOI: 10.1101/Pdb.Prot082602  0.329
2018 Kim TH, Dekker J. Formaldehyde Cross-Linking. Cold Spring Harbor Protocols. 2018: pdb.prot082594. PMID 29610357 DOI: 10.1101/Pdb.Prot082594  0.318
2018 Ray P, Torck A, Quigley L, Wangzhou A, Neiman M, Rao C, Lam T, Kim JY, Kim TH, Zhang MQ, Dussor G, Price TJ. Title: Comparative transcriptome profiling of the human and mouse dorsal root ganglia: an RNA-seq-based resource for pain and sensory neuroscience research. Pain. PMID 29561359 DOI: 10.1097/J.Pain.0000000000001217  0.369
2017 Johnson BS, Zhao YT, Fasolino M, Lamonica JM, Kim YJ, Georgakilas G, Wood KH, Bu D, Cui Y, Goffin D, Vahedi G, Kim TH, Zhou Z. Biotin tagging of MeCP2 in mice reveals contextual insights into the Rett syndrome transcriptome. Nature Medicine. PMID 28920956 DOI: 10.1038/Nm.4406  0.5
2017 Kim YJ, Kim TH. Chromosome Conformation Capture for Research on Innate Antiviral Immunity. Methods in Molecular Biology (Clifton, N.J.). 1656: 195-208. PMID 28808972 DOI: 10.1007/978-1-4939-7237-1_13  0.323
2016 Cha B, Geng X, Mahamud MR, Fu J, Mukherjee A, Kim Y, Jho EH, Kim TH, Kahn ML, Xia L, Dixon JB, Chen H, Srinivasan RS. Mechanotransduction activates canonical Wnt/β-catenin signaling to promote lymphatic vascular patterning and the development of lymphatic and lymphovenous valves. Genes & Development. PMID 27313318 DOI: 10.1101/Gad.282400.116  0.26
2016 Tan JL, Fogley RD, Flynn RA, Ablain J, Yang S, Saint-André V, Fan ZP, Do BT, Laga AC, Fujinaga K, Santoriello C, Greer CB, Kim YJ, Clohessy JG, Bothmer A, ... ... Kim TH, et al. Stress from Nucleotide Depletion Activates the Transcriptional Regulator HEXIM1 to Suppress Melanoma. Molecular Cell. 62: 34-46. PMID 27058786 DOI: 10.1016/J.Molcel.2016.03.013  0.683
2015 Greer CB, Tanaka Y, Kim YJ, Xie P, Zhang MQ, Park IH, Kim TH. Histone Deacetylases Positively Regulate Transcription through the Elongation Machinery. Cell Reports. PMID 26549458 DOI: 10.1016/J.Celrep.2015.10.013  0.666
2015 Nwigwe IJ, Kim YJ, Wacker DA, Kim TH. Boundary Associated Long Noncoding RNA Mediates Long-Range Chromosomal Interactions. Plos One. 10: e0136104. PMID 26302455 DOI: 10.1371/journal.pone.0136104  0.365
2014 Banerjee AR, Kim YJ, Kim TH. A novel virus-inducible enhancer of the interferon-β gene with tightly linked promoter and enhancer activities. Nucleic Acids Research. 42: 12537-54. PMID 25348400 DOI: 10.1093/Nar/Gku1018  0.7
2014 Kim LK, Esplugues E, Zorca CE, Parisi F, Kluger Y, Kim TH, Galjart NJ, Flavell RA. Oct-1 regulates IL-17 expression by directing interchromosomal associations in conjunction with CTCF in T cells. Molecular Cell. 54: 56-66. PMID 24613343 DOI: 10.1016/J.Molcel.2014.02.004  0.272
2013 Kim YJ, Greer CB, Cecchini KR, Harris LN, Tuck DP, Kim TH. HDAC inhibitors induce transcriptional repression of high copy number genes in breast cancer through elongation blockade. Oncogene. 32: 2828-35. PMID 23435418 DOI: 10.1038/onc.2013.32  0.645
2011 Baysal BE, McKay SE, Kim YJ, Zhang Z, Alila L, Willett-Brozick JE, Pacak K, Kim TH, Shadel GS. Genomic imprinting at a boundary element flanking the SDHD locus. Human Molecular Genetics. 20: 4452-61. PMID 21862453 DOI: 10.1093/Hmg/Ddr376  0.33
2011 Kim YJ, Cecchini KR, Kim TH. Conserved, developmentally regulated mechanism couples chromosomal looping and heterochromatin barrier activity at the homeobox gene A locus. Proceedings of the National Academy of Sciences of the United States of America. 108: 7391-6. PMID 21502535 DOI: 10.1073/pnas.1018279108  0.384
2009 Gilbert KB, Kim TH, Gupta R, Greenberg EP, Schuster M. Global position analysis of the Pseudomonas aeruginosa quorum-sensing transcription factor LasR. Molecular Microbiology. 73: 1072-85. PMID 19682264 DOI: 10.1111/J.1365-2958.2009.06832.X  0.436
2009 Cecchini KR, Banerjee AR, Kim TH. Towards a genome-wide reconstruction of cis-regulatory networks in the human genome. Seminars in Cell & Developmental Biology. 20: 842-848. PMID 19560550 DOI: 10.1016/J.Semcdb.2009.06.005  0.447
2009 Wacker DA, Kim TH. From sextant to GPS: twenty-five years of mapping the genome with ChIP. Journal of Cellular Biochemistry. 107: 6-10. PMID 19180576 DOI: 10.1002/jcb.22060  0.293
2007 Kim TH, Barrera LO, Ren B. ChIP-chip for genome-wide analysis of protein binding in mammalian cells. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 21.13. PMID 18265397 DOI: 10.1002/0471142727.Mb2113S79  0.618
2007 Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, ... ... Kim TH, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 447: 799-816. PMID 17571346 DOI: 10.1038/Nature05874  0.751
2007 Kim TH, Abdullaev ZK, Smith AD, Ching KA, Loukinov DI, Green RD, Zhang MQ, Lobanenkov VV, Ren B. Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome. Cell. 128: 1231-45. PMID 17382889 DOI: 10.1016/J.Cell.2006.12.048  0.644
2006 Kim TH, Ren B. An all-round view of eukaryotic transcription. Genome Biology. 7: 323. PMID 16879733 DOI: 10.1186/Gb-2006-7-7-323  0.605
2006 Kim TH, Ren B. Genome-wide analysis of protein-DNA interactions. Annual Review of Genomics and Human Genetics. 7: 81-102. PMID 16722805 DOI: 10.1146/Annurev.Genom.7.080505.115634  0.642
2006 Sun P, Xiong H, Kim TH, Ren B, Zhang Z. Positive inter-regulation between beta-catenin/T cell factor-4 signaling and endothelin-1 signaling potentiates proliferation and survival of prostate cancer cells. Molecular Pharmacology. 69: 520-31. PMID 16291872 DOI: 10.1124/Mol.105.019620  0.574
2005 Kim TH, Barrera LO, Zheng M, Qu C, Singer MA, Richmond TA, Wu Y, Green RD, Ren B. A high-resolution map of active promoters in the human genome. Nature. 436: 876-80. PMID 15988478 DOI: 10.1038/Nature03877  0.654
2005 Kim TH, Barrera LO, Qu C, Van Calcar S, Trinklein ND, Cooper SJ, Luna RM, Glass CK, Rosenfeld MG, Myers RM, Ren B. Direct isolation and identification of promoters in the human genome. Genome Research. 15: 830-9. PMID 15899964 DOI: 10.1101/Gr.3430605  0.707
2005 Kim TH, Xiong H, Zhang Z, Ren B. beta-Catenin activates the growth factor endothelin-1 in colon cancer cells. Oncogene. 24: 597-604. PMID 15558022 DOI: 10.1038/Sj.Onc.1208237  0.595
1999 Ren B, Chee KJ, Kim TH, Maniatis T. PRDI-BF1/Blimp-1 repression is mediated by corepressors of the Groucho family of proteins. Genes & Development. 13: 125-37. PMID 9887105 DOI: 10.1101/Gad.13.1.125  0.72
1998 Maniatis T, Falvo JV, Kim TH, Kim TK, Lin CH, Parekh BS, Wathelet MG. Structure and function of the interferon-beta enhanceosome. Cold Spring Harbor Symposia On Quantitative Biology. 63: 609-20. PMID 10384326 DOI: 10.1101/SQB.1998.63.609  0.651
1998 Kim TK, Kim TH, Maniatis T. Efficient recruitment of TFIIB and CBP-RNA polymerase II holoenzyme by an interferon-beta enhanceosome in vitro. Proceedings of the National Academy of Sciences of the United States of America. 95: 12191-6. PMID 9770462 DOI: 10.1073/pnas.95.21.12191  0.671
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