Michael Hines - Publications

Affiliations: 
Yale University, New Haven, CT 

71 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Dura-Bernal S, Suter BA, Gleeson P, Cantarelli M, Quintana A, Rodriguez F, Kedziora DJ, Chadderdon GL, Kerr CC, Neymotin SA, McDougal RA, Hines M, Shepherd GMG, Lytton WW. NetPyNE, a tool for data-driven multiscale modeling of brain circuits. Elife. 8. PMID 31025934 DOI: 10.7554/eLife.44494  1
2019 Shepherd GM, Marenco L, Hines ML, Migliore M, McDougal RA, Carnevale NT, Newton AJH, Surles-Zeigler M, Ascoli GA. Neuron Names: A Gene- and Property-Based Name Format, With Special Reference to Cortical Neurons. Frontiers in Neuroanatomy. 13: 25. PMID 30949034 DOI: 10.3389/fnana.2019.00025  1
2018 Newton AJH, McDougal RA, Hines ML, Lytton WW. Using NEURON for Reaction-Diffusion Modeling of Extracellular Dynamics. Frontiers in Neuroinformatics. 12: 41. PMID 30042670 DOI: 10.3389/fninf.2018.00041  1
2018 Cavarretta F, Burton SD, Igarashi KM, Shepherd GM, Hines ML, Migliore M. Parallel odor processing by mitral and middle tufted cells in the olfactory bulb. Scientific Reports. 8: 7625. PMID 29769664 DOI: 10.1038/s41598-018-25740-x  1
2018 Antic SD, Hines M, Lytton WW. Embedded ensemble encoding hypothesis: The role of the "Prepared" cell. Journal of Neuroscience Research. PMID 29633330 DOI: 10.1002/jnr.24240  1
2017 Lin Z, Tropper C, Yao Y, Mcdougal RA, Ishlam Patoary MN, Lytton WW, Hines ML. Load balancing for multi-threaded PDES of stochastic reaction-diffusion in neurons. Journal of Simulation : Jos. 11: 267-284. PMID 29225664 DOI: 10.1057/s41273-016-0033-x  1
2017 Lin Z, Tropper C, Mcdougal RA, Patoary MNI, Lytton WW, Yao Y, Hines ML. Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons. Acm Transactions On Modeling and Computer Simulation : a Publication of the Association For Computing Machinery. 27. PMID 28943743 DOI: 10.1145/2987373  1
2016 McDougal RA, Morse TM, Carnevale T, Marenco L, Wang R, Migliore M, Miller PL, Shepherd GM, Hines ML. Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience. Journal of Computational Neuroscience. PMID 27629590 DOI: 10.1007/s10827-016-0623-7  0.56
2016 Lytton WW, Seidenstein AH, Dura-Bernal S, McDougal RA, Schürmann F, Hines ML. Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON. Neural Computation. 1-28. PMID 27557104 DOI: 10.1162/NECO_a_00876  1
2016 Cavarretta F, Marasco A, Hines ML, Shepherd GM, Migliore M. Glomerular and Mitral-Granule Cell Microcircuits Coordinate Temporal and Spatial Information Processing in the Olfactory Bulb. Frontiers in Computational Neuroscience. 10: 67. PMID 27471461 DOI: 10.3389/fncom.2016.00067  1
2016 Ju H, Hines ML, Yu Y. Cable energy function of cortical axons. Scientific Reports. 6: 29686. PMID 27439954 DOI: 10.1038/srep29686  0.56
2016 Neymotin SA, McDougal RA, Bulanova AS, Zeki M, Lakatos P, Terman D, Hines ML, Lytton WW. Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex. Neuroscience. 316: 344-66. PMID 26746357 DOI: 10.1016/j.neuroscience.2015.12.043  1
2016 Neymotin SA, McDougal RA, Bulanova AS, Zeki M, Lakatos P, Terman D, Hines ML, Lytton WW. Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex Neuroscience. 316: 344-366. DOI: 10.1016/j.neuroscience.2015.12.043  1
2015 Markram H, Muller E, Ramaswamy S, Reimann MW, Abdellah M, Sanchez CA, Ailamaki A, Alonso-Nanclares L, Antille N, Arsever S, Kahou GA, Berger TK, Bilgili A, Buncic N, Chalimourda A, ... ... Hines M, et al. Reconstruction and Simulation of Neocortical Microcircuitry. Cell. 163: 456-492. PMID 26451489 DOI: 10.1016/j.cell.2015.09.029  1
2015 Migliore M, Cavarretta F, Marasco A, Tulumello E, Hines ML, Shepherd GM. Synaptic clusters function as odor operators in the olfactory bulb. Proceedings of the National Academy of Sciences of the United States of America. PMID 26100895 DOI: 10.1073/pnas.1502513112  1
2015 Muller E, Bednar JA, Diesmann M, Gewaltig MO, Hines M, Davison AP. Python in neuroscience. Frontiers in Neuroinformatics. 9: 11. PMID 25926788 DOI: 10.3389/fninf.2015.00011  1
2015 McDougal RA, Morse TM, Hines ML, Shepherd GM. ModelView for ModelDB: Online Presentation of Model Structure. Neuroinformatics. PMID 25896640 DOI: 10.1007/s12021-015-9269-2  1
2015 Neymotin SA, McDougal RA, Sherif MA, Fall CP, Hines ML, Lytton WW. Neuronal calcium wave propagation varies with changes in endoplasmic reticulum parameters: a computer model. Neural Computation. 27: 898-924. PMID 25734493 DOI: 10.1162/NECO_a_00712  1
2014 Yu Y, Migliore M, Hines ML, Shepherd GM. Sparse coding and lateral inhibition arising from balanced and unbalanced dendrodendritic excitation and inhibition. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 13701-13. PMID 25297097 DOI: 10.1523/JNEUROSCI.1834-14.2014  1
2014 Casaleggio A, Hines ML, Migliore M. Computational model of erratic arrhythmias in a cardiac cell network: the role of gap junctions. Plos One. 9: e100288. PMID 24941068 DOI: 10.1371/journal.pone.0100288  1
2014 Migliore M, Cavarretta F, Hines ML, Shepherd GM. Distributed organization of a brain microcircuit analyzed by three-dimensional modeling: the olfactory bulb. Frontiers in Computational Neuroscience. 8: 50. PMID 24808855 DOI: 10.3389/fncom.2014.00050  1
2013 McDougal RA, Hines ML, Lytton WW. Reaction-diffusion in the NEURON simulator. Frontiers in Neuroinformatics. 7: 28. PMID 24298253 DOI: 10.3389/fninf.2013.00028  1
2013 Migliore M, Cavarretta F, Hines ML, Shepherd GM. Functional neurology of a brain system: a 3D olfactory bulb model to process natural odorants. Functional Neurology. 28: 241-3. PMID 24139659 DOI: 10.11138/FNeur/2013.28.3.241  1
2013 McDougal RA, Hines ML, Lytton WW. Water-tight membranes from neuronal morphology files. Journal of Neuroscience Methods. 220: 167-78. PMID 24091136 DOI: 10.1016/j.jneumeth.2013.09.011  1
2013 Yu Y, McTavish TS, Hines ML, Shepherd GM, Valenti C, Migliore M. Sparse distributed representation of odors in a large-scale olfactory bulb circuit. Plos Computational Biology. 9: e1003014. PMID 23555237 DOI: 10.1371/journal.pcbi.1003014  1
2012 McTavish TS, Migliore M, Shepherd GM, Hines ML. Mitral cell spike synchrony modulated by dendrodendritic synapse location. Frontiers in Computational Neuroscience. 6: 3. PMID 22319487 DOI: 10.3389/fncom.2012.00003  1
2011 Hines M, Kumar S, Schürmann F. Comparison of neuronal spike exchange methods on a Blue Gene/P supercomputer. Frontiers in Computational Neuroscience. 5: 49. PMID 22121345 DOI: 10.3389/fncom.2011.00049  1
2011 Jing L, Parker CE, Seo D, Hines MW, Dicheva N, Yu Y, Schwinn D, Ginsburg GS, Chen X. Discovery of biomarker candidates for coronary artery disease from an APOE-knock out mouse model using iTRAQ-based multiplex quantitative proteomics. Proteomics. 11: 2763-76. PMID 21681990 DOI: 10.1002/pmic.201000202  0.6
2010 Kumar S, Heidelberger P, Chen D, Hines M. Optimization of Applications with Non-blocking Neighborhood Collectives via Multisends on the Blue Gene/P Supercomputer. Ipdps ... / International Parallel and Distributed Processing Symposium. Ipdps (Conference). 2010: 1-11. PMID 21666880 DOI: 10.1109/IPDPS.2010.5470407  1
2010 Migliore M, Hines ML, McTavish TS, Shepherd GM. Functional roles of distributed synaptic clusters in the mitral-granule cell network of the olfactory bulb. Frontiers in Integrative Neuroscience. 4: 122. PMID 21258619 DOI: 10.3389/fnint.2010.00122  1
2010 Gleeson P, Crook S, Cannon RC, Hines ML, Billings GO, Farinella M, Morse TM, Davison AP, Ray S, Bhalla US, Barnes SR, Dimitrova YD, Silver RA. NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. Plos Computational Biology. 6: e1000815. PMID 20585541 DOI: 10.1371/journal.pcbi.1000815  1
2009 Davison AP, Hines ML, Muller E. Trends in programming languages for neuroscience simulations. Frontiers in Neuroscience. 3: 374-80. PMID 20198154 DOI: 10.3389/neuro.01.036.2009  1
2009 King JG, Hines M, Hill S, Goodman PH, Markram H, Schürmann F. A Component-Based Extension Framework for Large-Scale Parallel Simulations in NEURON. Frontiers in Neuroinformatics. 3: 10. PMID 19430597 DOI: 10.3389/neuro.11.010.2009  1
2009 Hines ML, Davison AP, Muller E. NEURON and Python. Frontiers in Neuroinformatics. 3: 1. PMID 19198661 DOI: 10.3389/neuro.11.001.2009  1
2008 Zhao Y, Xiao J, Ueda M, Wang Y, Hines M, Nowak TS, LeDoux MS. Glial elements contribute to stress-induced torsinA expression in the CNS and peripheral nervous system. Neuroscience. 155: 439-53. PMID 18538941 DOI: 10.1016/j.neuroscience.2008.04.053  1
2008 Lytton WW, Omurtag A, Neymotin SA, Hines ML. Just-in-time connectivity for large spiking networks. Neural Computation. 20: 2745-56. PMID 18533821 DOI: 10.1162/neco.2008.10-07-622  1
2008 Lytton WW, Neymotin SA, Hines ML. The virtual slice setup. Journal of Neuroscience Methods. 171: 309-15. PMID 18452996 DOI: 10.1016/j.jneumeth.2008.03.005  1
2008 Hines ML, Markram H, Schürmann F. Fully implicit parallel simulation of single neurons. Journal of Computational Neuroscience. 25: 439-48. PMID 18379867 DOI: 10.1007/s10827-008-0087-5  1
2008 Hines ML, Eichner H, Schürmann F. Neuron splitting in compute-bound parallel network simulations enables runtime scaling with twice as many processors. Journal of Computational Neuroscience. 25: 203-10. PMID 18214662 DOI: 10.1007/s10827-007-0073-3  1
2008 Hines ML, Carnevale NT. Translating network models to parallel hardware in NEURON. Journal of Neuroscience Methods. 169: 425-55. PMID 17997162 DOI: 10.1016/j.jneumeth.2007.09.010  1
2008 Carnevale NT, Hines M. The Neuron Simulation Environment in Epilepsy Research Computational Neuroscience in Epilepsy. 18-33. DOI: 10.1016/B978-012373649-9.50005-3  1
2008 Lytton WW, Stewart M, Hines M. Simulation of Large Networks: Technique and Progress Computational Neuroscience in Epilepsy. 3-17. DOI: 10.1016/B978-012373649-9.50004-1  1
2007 Hines ML, Morse TM, Carnevale NT. Model structure analysis in NEURON : toward interoperability among neural simulators. Methods in Molecular Biology (Clifton, N.J.). 401: 91-102. PMID 18368362 DOI: 10.1007/978-1-59745-520-6_6  1
2007 Cannon RC, Gewaltig MO, Gleeson P, Bhalla US, Cornelis H, Hines ML, Howell FW, Muller E, Stiles JR, Wils S, De Schutter E. Interoperability of neuroscience modeling software: current status and future directions. Neuroinformatics. 5: 127-38. PMID 17873374 DOI: 10.1007/s12021-007-0004-5  1
2007 Brette R, Rudolph M, Carnevale T, Hines M, Beeman D, Bower JM, Diesmann M, Morrison A, Goodman PH, Harris FC, Zirpe M, Natschläger T, Pecevski D, Ermentrout B, Djurfeldt M, et al. Simulation of networks of spiking neurons: a review of tools and strategies. Journal of Computational Neuroscience. 23: 349-98. PMID 17629781 DOI: 10.1007/s10827-007-0038-6  1
2006 Migliore M, Cannia C, Lytton WW, Markram H, Hines ML. Parallel network simulations with NEURON. Journal of Computational Neuroscience. 21: 119-29. PMID 16732488 DOI: 10.1007/s10827-006-7949-5  1
2006 Carnevale NT, Hines ML. The NEURON book The Neuron Book. 1-457. DOI: 10.1017/CBO9780511541612  1
2005 Lytton WW, Hines ML. Independent variable time-step integration of individual neurons for network simulations. Neural Computation. 17: 903-21. PMID 15829094 DOI: 10.1162/0899766053429453  1
2005 Migliore M, Hines ML, Shepherd GM. The role of distal dendritic gap junctions in synchronization of mitral cell axonal output. Journal of Computational Neuroscience. 18: 151-61. PMID 15714267 DOI: 10.1007/s10827-005-6556-1  1
2004 Lytton WW, Hines M. Hybrid neural networks--combining abstract and realistic neural units. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 6: 3996-8. PMID 17271174 DOI: 10.1109/IEMBS.2004.1404116  1
2004 Davison AP, Morse TM, Migliore M, Shepherd GM, Hines ML. Semi-automated population of an online database of neuronal models (ModelDB) with citation information, using PubMed for validation. Neuroinformatics. 2: 327-32. PMID 15365194 DOI: 10.1385/NI:2:3:327  1
2004 Hines ML, Morse T, Migliore M, Carnevale NT, Shepherd GM. ModelDB: A Database to Support Computational Neuroscience. Journal of Computational Neuroscience. 17: 7-11. PMID 15218350 DOI: 10.1023/B:JCNS.0000023869.22017.2e  1
2004 Hines ML, Carnevale NT. Discrete event simulation in the NEURON environment Neurocomputing. 58: 1117-1122. DOI: 10.1016/j.neucom.2004.01.175  1
2004 Lytton WW, Hines M. Hybrid neural networks - Combining abstract and realistic neural units Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 26: 3996-3998.  1
2003 Migliore M, Morse TM, Davison AP, Marenco L, Shepherd GM, Hines ML. ModelDB: making models publicly accessible to support computational neuroscience. Neuroinformatics. 1: 135-9. PMID 15055399 DOI: 10.1385/NI:1:1:135  1
2003 Gardner D, Toga AW, Ascoli GA, Beatty JT, Brinkley JF, Dale AM, Fox PT, Gardner EP, George JS, Goddard N, Harris KM, Herskovits EH, Hines ML, Jacobs GA, Jacobs RE, et al. Towards effective and rewarding data sharing. Neuroinformatics. 1: 289-95. PMID 15046250 DOI: 10.1385/NI:1:3:289  1
2003 Crasto CJ, Morse TM, Migliore M, Nadkarni P, Hines M, Brash DE, Miller PL, Shepherd GM. Creating knowledgebases to text-mine PUBMED articles using clustering techniques. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 821. PMID 14728326  1
2002 Chen WR, Shen GY, Shepherd GM, Hines ML, Midtgaard J. Multiple modes of action potential initiation and propagation in mitral cell primary dendrite. Journal of Neurophysiology. 88: 2755-64. PMID 12424310 DOI: 10.1152/jn.00057.2002  1
2001 Hines ML, Carnevale NT. NEURON: a tool for neuroscientists. The Neuroscientist : a Review Journal Bringing Neurobiology, Neurology and Psychiatry. 7: 123-35. PMID 11496923  1
2001 Crane GJ, Hines ML, Neild TO. Simulating the spread of membrane potential changes in arteriolar networks. Microcirculation (New York, N.Y. : 1994). 8: 33-43. PMID 11296851 DOI: 10.1038/sj.mn.7300144  1
2001 Miller PL, Nadkarni P, Singer M, Marenco L, Hines M, Shepherd G. Integration of multidisciplinary sensory data: a pilot model of the human brain project approach. Journal of the American Medical Informatics Association : Jamia. 8: 34-48. PMID 11141511  1
2001 Goddard N, Hood G, Howell F, Hines M, De Schutter E. NEOSIM: Portable large-scale plug and play modelling Neurocomputing. 38: 1657-1661. DOI: 10.1016/S0925-2312(01)00528-8  1
2001 Shen GY, Ye S, Chen WR, Midtgaard J, Shepherd GM, Hines ML. Strategy for fitting neuronal models to dual patch data under multiple stimulation protocols Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 2: 1015-1018.  1
2000 Hines ML, Carnevale NT. Expanding NEURON's repertoire of mechanisms with NMODL. Neural Computation. 12: 995-1007. PMID 10905805  1
1999 Shen GY, Chen WR, Midtgaard J, Shepherd GM, Hines ML. Computational analysis of action potential initiation in mitral cell soma and dendrites based on dual patch recordings. Journal of Neurophysiology. 82: 3006-20. PMID 10601436  1
1998 Shepherd GM, Mirsky JS, Healy MD, Singer MS, Skoufos E, Hines MS, Nadkarni PM, Miller PL. The Human Brain Project: neuroinformatics tools for integrating, searching and modeling multidisciplinary neuroscience data. Trends in Neurosciences. 21: 460-8. PMID 9829685 DOI: 10.1016/S0166-2236(98)01300-9  0.48
1997 Hines ML, Carnevale NT. The NEURON simulation environment. Neural Computation. 9: 1179-209. PMID 9248061  1
1994 Kohn MC, Hines ML, Kootsey JM, Feezor MD. A block organized model builder Mathematical and Computer Modelling. 19: 75-97. DOI: 10.1016/0895-7177(94)90190-2  1
1993 Stasheff SF, Hines M, Wilson WA. Axon terminal hyperexcitability associated with epileptogenesis in vitro. I. Origin of ectopic spikes. Journal of Neurophysiology. 70: 961-75. PMID 8229182  1
1989 Hines M. A program for simulation of nerve equations with branching geometries International Journal of Bio-Medical Computing. 24: 55-68. PMID 2714879 DOI: 10.1016/0020-7101(89)90007-X  1
1984 Hines M. Efficient computation of branched nerve equations International Journal of Bio-Medical Computing. 15: 69-76. PMID 6698635 DOI: 10.1016/0020-7101(84)90008-4  1
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