| Year |
Citation |
Score |
| 2019 |
Quang D, Xie X. FactorNet: a deep learning framework for predicting cell type specific transcription factor binding from nucleotide-resolution sequential data. Methods (San Diego, Calif.). PMID 30922998 DOI: 10.1016/j.ymeth.2019.03.020 |
0.362 |
|
| 2017 |
Newkirk DA, Chen YY, Chien R, Zeng W, Biesinger J, Flowers E, Kawauchi S, Santos R, Calof AL, Lander AD, Xie X, Yokomori K. The effect of Nipped-B-like (Nipbl) haploinsufficiency on genome-wide cohesin binding and target gene expression: modeling Cornelia de Lange syndrome. Clinical Epigenetics. 9: 89. PMID 28855971 DOI: 10.1186/S13148-017-0391-X |
0.315 |
|
| 2017 |
Charney RM, Forouzmand E, Cho JS, Cheung J, Paraiso KD, Yasuoka Y, Takahashi S, Taira M, Blitz IL, Xie X, Cho KW. Foxh1 Occupies cis-Regulatory Modules Prior to Dynamic Transcription Factor Interactions Controlling the Mesendoderm Gene Program. Developmental Cell. PMID 28325473 DOI: 10.1016/J.Devcel.2017.02.017 |
0.324 |
|
| 2016 |
Forouzmand E, Owens ND, Blitz IL, Paraiso KD, Khokha MK, Gilchrist MJ, Xie X, Cho KW. Developmentally regulated long non-coding RNAs in Xenopus tropicalis. Developmental Biology. PMID 27418388 DOI: 10.1016/j.ydbio.2016.06.016 |
0.315 |
|
| 2016 |
Quang D, Xie X. DanQ: a hybrid convolutional and recurrent deep neural network for quantifying the function of DNA sequences. Nucleic Acids Research. PMID 27084946 DOI: 10.1093/nar/gkw226 |
0.334 |
|
| 2016 |
Chen Y, Li Y, Narayan R, Subramanian A, Xie X. Gene expression inference with deep learning. Bioinformatics (Oxford, England). PMID 26873929 DOI: 10.1093/Bioinformatics/Btw074 |
0.324 |
|
| 2015 |
Li Y, Xie X. MixClone: a mixture model for inferring tumor subclonal populations. Bmc Genomics. 16: S1. PMID 25707430 DOI: 10.1186/1471-2164-16-S2-S1 |
0.322 |
|
| 2015 |
Quang D, Chen Y, Xie X. DANN: a deep learning approach for annotating the pathogenicity of genetic variants. Bioinformatics (Oxford, England). 31: 761-3. PMID 25338716 DOI: 10.1093/bioinformatics/btu703 |
0.311 |
|
| 2015 |
Kim I, Xie X. Handwritten Hangul recognition using deep convolutional neural networks International Journal On Document Analysis and Recognition. 18: 1-13. DOI: 10.1007/S10032-014-0229-4 |
0.301 |
|
| 2014 |
Chiu WT, Charney Le R, Blitz IL, Fish MB, Li Y, Biesinger J, Xie X, Cho KW. Genome-wide view of TGFβ/Foxh1 regulation of the early mesendoderm program. Development (Cambridge, England). 141: 4537-47. PMID 25359723 DOI: 10.1242/dev.107227 |
0.315 |
|
| 2014 |
Watanabe K, Biesinger J, Salmans ML, Roberts BS, Arthur WT, Cleary M, Andersen B, Xie X, Dai X. Integrative ChIP-seq/microarray analysis identifies a CTNNB1 target signature enriched in intestinal stem cells and colon cancer. Plos One. 9: e92317. PMID 24651522 DOI: 10.1371/Journal.Pone.0092317 |
0.307 |
|
| 2014 |
Quang D, Xie X. EXTREME: an online EM algorithm for motif discovery. Bioinformatics (Oxford, England). 30: 1667-73. PMID 24532725 DOI: 10.1093/bioinformatics/btu093 |
0.33 |
|
| 2014 |
Kim J, Li C, Xie X. Improving read mapping using additional prefix grams. Bmc Bioinformatics. 15: 42. PMID 24499321 DOI: 10.1186/1471-2105-15-42 |
0.302 |
|
| 2014 |
Zheng Z, Christley S, Chiu WT, Blitz IL, Xie X, Cho KW, Nie Q. Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns. Bmc Systems Biology. 8: 3. PMID 24397936 DOI: 10.1186/1752-0509-8-3 |
0.326 |
|
| 2013 |
Ye G, Tang M, Cai JF, Nie Q, Xie X. Low-rank regularization for learning gene expression programs. Plos One. 8: e82146. PMID 24358148 DOI: 10.1371/Journal.Pone.0082146 |
0.331 |
|
| 2013 |
Blitz IL, Biesinger J, Xie X, Cho KW. Biallelic genome modification in F(0) Xenopus tropicalis embryos using the CRISPR/Cas system. Genesis (New York, N.Y. : 2000). 51: 827-34. PMID 24123579 DOI: 10.1002/dvg.22719 |
0.309 |
|
| 2013 |
Biesinger J, Wang Y, Xie X. Discovering and mapping chromatin states using a tree hidden Markov model. Bmc Bioinformatics. 14: S4. PMID 23734743 DOI: 10.7490/F1000Research.1093084.1 |
0.328 |
|
| 2012 |
Chong HK, Biesinger J, Seo YK, Xie X, Osborne TF. Genome-wide analysis of hepatic LRH-1 reveals a promoter binding preference and suggests a role in regulating genes of lipid metabolism in concert with FXR. Bmc Genomics. 13: 51. PMID 22296850 DOI: 10.1186/1471-2164-13-51 |
0.308 |
|
| 2012 |
Ahmadi A, Behm A, Honnalli N, Li C, Weng L, Xie X. Hobbes: optimized gram-based methods for efficient read alignment. Nucleic Acids Research. 40: e41. PMID 22199254 DOI: 10.1093/nar/gkr1246 |
0.305 |
|
| 2011 |
Daily K, Patel VR, Rigor P, Xie X, Baldi P. MotifMap: integrative genome-wide maps of regulatory motif sites for model species. Bmc Bioinformatics. 12: 495. PMID 22208852 DOI: 10.1186/1471-2105-12-495 |
0.359 |
|
| 2011 |
Newkirk D, Biesinger J, Chon A, Yokomori K, Xie X. AREM: aligning short reads from ChIP-sequencing by expectation maximization. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 1495-505. PMID 22035330 DOI: 10.1089/Cmb.2011.0185 |
0.354 |
|
| 2011 |
Lindblad-Toh K, Garber M, Zuk O, Lin MF, Parker BJ, Washietl S, Kheradpour P, Ernst J, Jordan G, Mauceli E, Ward LD, Lowe CB, Holloway AK, Clamp M, Gnerre S, ... ... Xie X, et al. A high-resolution map of human evolutionary constraint using 29 mammals. Nature. 478: 476-82. PMID 21993624 DOI: 10.1038/Nature10530 |
0.339 |
|
| 2011 |
Weng L, Macciardi F, Subramanian A, Guffanti G, Potkin SG, Yu Z, Xie X. SNP-based pathway enrichment analysis for genome-wide association studies. Bmc Bioinformatics. 12: 99. PMID 21496265 DOI: 10.1186/1471-2105-12-99 |
0.301 |
|
| 2011 |
Seo YK, Jeon TI, Chong HK, Biesinger J, Xie X, Osborne TF. Genome-wide localization of SREBP-2 in hepatic chromatin predicts a role in autophagy. Cell Metabolism. 13: 367-75. PMID 21459322 DOI: 10.1016/J.Cmet.2011.03.005 |
0.314 |
|
| 2010 |
Potkin SG, Macciardi F, Guffanti G, Fallon JH, Wang Q, Turner JA, Lakatos A, Miles MF, Lander A, Vawter MP, Xie X. Identifying gene regulatory networks in schizophrenia. Neuroimage. 53: 839-47. PMID 20600988 DOI: 10.1016/J.Neuroimage.2010.06.036 |
0.339 |
|
| 2010 |
Chong HK, Infante AM, Seo YK, Jeon TI, Zhang Y, Edwards PA, Xie X, Osborne TF. Genome-wide interrogation of hepatic FXR reveals an asymmetric IR-1 motif and synergy with LRH-1. Nucleic Acids Research. 38: 6007-17. PMID 20483916 DOI: 10.1093/Nar/Gkq397 |
0.339 |
|
| 2010 |
Kumar L, Breakspear A, Kistler C, Ma LJ, Xie X. Systematic discovery of regulatory motifs in Fusarium graminearum by comparing four Fusarium genomes. Bmc Genomics. 11: 208. PMID 20346147 DOI: 10.1186/1471-2164-11-208 |
0.337 |
|
| 2009 |
Christley S, Nie Q, Xie X. Incorporating existing network information into gene network inference. Plos One. 4: e6799. PMID 19710931 DOI: 10.1371/Journal.Pone.0006799 |
0.346 |
|
| 2009 |
Seo YK, Chong HK, Infante AM, Im SS, Xie X, Osborne TF. Genome-wide analysis of SREBP-1 binding in mouse liver chromatin reveals a preference for promoter proximal binding to a new motif. Proceedings of the National Academy of Sciences of the United States of America. 106: 13765-9. PMID 19666523 DOI: 10.1073/Pnas.0904246106 |
0.331 |
|
| 2009 |
Garber M, Guttman M, Clamp M, Zody MC, Friedman N, Xie X. Identifying novel constrained elements by exploiting biased substitution patterns. Bioinformatics (Oxford, England). 25: i54-62. PMID 19478016 DOI: 10.1093/Bioinformatics/Btp190 |
0.344 |
|
| 2009 |
Xie X, Rigor P, Baldi P. MotifMap: a human genome-wide map of candidate regulatory motif sites. Bioinformatics (Oxford, England). 25: 167-74. PMID 19017655 DOI: 10.1093/Bioinformatics/Btn605 |
0.344 |
|
| 2009 |
Christley S, Lu Y, Li C, Xie X. Human genomes as email attachments. Bioinformatics (Oxford, England). 25: 274-5. PMID 18996942 DOI: 10.1093/Bioinformatics/Btn582 |
0.311 |
|
| 2008 |
Ku M, Koche RP, Rheinbay E, Mendenhall EM, Endoh M, Mikkelsen TS, Presser A, Nusbaum C, Xie X, Chi AS, Adli M, Kasif S, Ptaszek LM, Cowan CA, Lander ES, et al. Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains. Plos Genetics. 4: e1000242. PMID 18974828 DOI: 10.1371/Journal.Pgen.1000242 |
0.309 |
|
| 2007 |
Clamp M, Fry B, Kamal M, Xie X, Cuff J, Lin MF, Kellis M, Lindblad-Toh K, Lander ES. Distinguishing protein-coding and noncoding genes in the human genome. Proceedings of the National Academy of Sciences of the United States of America. 104: 19428-33. PMID 18040051 DOI: 10.1073/Pnas.0709013104 |
0.322 |
|
| 2007 |
Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim TK, Koche RP, Lee W, Mendenhall E, O'Donovan A, Presser A, Russ C, ... Xie X, et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature. 448: 553-60. PMID 17603471 DOI: 10.1038/Nature06008 |
0.343 |
|
| 2007 |
Mikkelsen TS, Wakefield MJ, Aken B, Amemiya CT, Chang JL, Duke S, Garber M, Gentles AJ, Goodstadt L, Heger A, Jurka J, Kamal M, Mauceli E, Searle SM, Sharpe T, ... ... Xie X, et al. Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature. 447: 167-77. PMID 17495919 DOI: 10.1038/Nature05805 |
0.342 |
|
| 2007 |
Xie X, Mikkelsen TS, Gnirke A, Lindblad-Toh K, Kellis M, Lander ES. Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites. Proceedings of the National Academy of Sciences of the United States of America. 104: 7145-50. PMID 17442748 DOI: 10.1073/Pnas.0701811104 |
0.386 |
|
| 2006 |
Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, Cuff J, Fry B, Meissner A, Wernig M, Plath K, Jaenisch R, Wagschal A, Feil R, Schreiber SL, Lander ES. A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell. 125: 315-26. PMID 16630819 DOI: 10.1016/J.Cell.2006.02.041 |
0.322 |
|
| 2006 |
Foster LJ, de Hoog CL, Zhang Y, Zhang Y, Xie X, Mootha VK, Mann M. A mammalian organelle map by protein correlation profiling. Cell. 125: 187-99. PMID 16615899 DOI: 10.1016/J.Cell.2006.03.022 |
0.321 |
|
| 2006 |
Kamal M, Xie X, Lander ES. A large family of ancient repeat elements in the human genome is under strong selection. Proceedings of the National Academy of Sciences of the United States of America. 103: 2740-5. PMID 16477033 DOI: 10.1073/pnas.0511238103 |
0.323 |
|
| 2005 |
Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, Kamal M, Clamp M, Chang JL, Kulbokas EJ, Zody MC, Mauceli E, Xie X, Breen M, Wayne RK, Ostrander EA, et al. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature. 438: 803-19. PMID 16341006 DOI: 10.1038/Nature04338 |
0.338 |
|
| 2005 |
Werfel J, Xie X, Seung HS. Learning curves for stochastic gradient descent in linear feedforward networks. Neural Computation. 17: 2699-718. PMID 16212768 DOI: 10.1162/089976605774320539 |
0.487 |
|
| 2005 |
Giallourakis C, Henson C, Reich M, Xie X, Mootha VK. Disease gene discovery through integrative genomics. Annual Review of Genomics and Human Genetics. 6: 381-406. PMID 16124867 DOI: 10.1146/Annurev.Genom.6.080604.162234 |
0.363 |
|
| 2005 |
Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature. 434: 338-45. PMID 15735639 DOI: 10.1038/Nature03441 |
0.322 |
|
| 2004 |
Xie X, Seung HS. Learning in neural networks by reinforcement of irregular spiking. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 69: 041909. PMID 15169045 DOI: 10.1103/Physreve.69.041909 |
0.554 |
|
| 2003 |
Xie X, Seung HS. Equivalence of backpropagation and contrastive Hebbian learning in a layered network. Neural Computation. 15: 441-54. PMID 12590814 DOI: 10.1162/089976603762552988 |
0.557 |
|
| 2002 |
Xie X, Hahnloser RH, Seung HS. Double-ring network model of the head-direction system. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 66: 041902. PMID 12443230 DOI: 10.1103/PhysRevE.66.041902 |
0.664 |
|
| 2002 |
Xie X, Hahnloser RH, Seung HS. Selectively grouping neurons in recurrent networks of lateral inhibition. Neural Computation. 14: 2627-46. PMID 12433293 DOI: 10.1162/089976602760408008 |
0.667 |
|
| 2002 |
Xie X, Giese MA. Nonlinear dynamics of direction-selective recurrent neural media. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 65: 051904. PMID 12059590 DOI: 10.1103/Physreve.65.051904 |
0.329 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2007 |
Sabeti PC, Varilly P, Fry B, Lohmueller J, Hostetter E, Cotsapas C, Xie X, Byrne EH, McCarroll SA, Gaudet R, Schaffner SF, Lander ES, Frazer KA, Ballinger DG, et al. Genome-wide detection and characterization of positive selection in human populations. Nature. 449: 913-8. PMID 17943131 DOI: 10.1038/Nature06250 |
0.3 |
|
| 2016 |
Weng L, Li Y, Xie X, Shi Y. Poly(A) code analyses reveal key determinants for tissue-specific mRNA alternative polyadenylation. Rna (New York, N.Y.). PMID 27095026 DOI: 10.1261/rna.055681.115 |
0.297 |
|
| 2006 |
Wu J, Xie X. Comparative sequence analysis reveals an intricate network among REST, CREB and miRNA in mediating neuronal gene expression. Genome Biology. 7: R85. PMID 17002790 DOI: 10.1186/gb-2006-7-9-r85 |
0.295 |
|
| 2006 |
Calvo S, Jain M, Xie X, Sheth SA, Chang B, Goldberger OA, Spinazzola A, Zeviani M, Carr SA, Mootha VK. Systematic identification of human mitochondrial disease genes through integrative genomics. Nature Genetics. 38: 576-82. PMID 16582907 DOI: 10.1016/J.Mito.2007.08.068 |
0.295 |
|
| 2002 |
Giese M, Xie X. Exact solution of the nonlinear dynamics of recurrent neural mechanisms for direction selectivity Neurocomputing. 44: 417-422. DOI: 10.1016/S0925-2312(02)00394-6 |
0.293 |
|
| 2014 |
Li Y, Xie X. Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity. Bioinformatics (Oxford, England). 30: 2121-9. PMID 24695406 DOI: 10.1093/bioinformatics/btu174 |
0.292 |
|
| 2012 |
Yao C, Biesinger J, Wan J, Weng L, Xing Y, Xie X, Shi Y. Transcriptome-wide analyses of CstF64-RNA interactions in global regulation of mRNA alternative polyadenylation. Proceedings of the National Academy of Sciences of the United States of America. 109: 18773-8. PMID 23112178 DOI: 10.1073/Pnas.1211101109 |
0.292 |
|
| 2018 |
Zhu Y, Wang X, Forouzmand E, Jeong J, Qiao F, Sowd GA, Engelman AN, Xie X, Hertel KJ, Shi Y. Molecular Mechanisms for CFIm-Mediated Regulation of mRNA Alternative Polyadenylation. Molecular Cell. 69: 62-74.e4. PMID 29276085 DOI: 10.1016/J.Molcel.2017.11.031 |
0.286 |
|
| 2006 |
Xie X, Kamal M, Lander ES. A family of conserved noncoding elements derived from an ancient transposable element. Proceedings of the National Academy of Sciences of the United States of America. 103: 11659-64. PMID 16864796 DOI: 10.1073/pnas.0604768103 |
0.285 |
|
| 2014 |
Lackford B, Yao C, Charles GM, Weng L, Zheng X, Choi EA, Xie X, Wan J, Xing Y, Freudenberg JM, Yang P, Jothi R, Hu G, Shi Y. Fip1 regulates mRNA alternative polyadenylation to promote stem cell self-renewal. The Embo Journal. 33: 878-89. PMID 24596251 DOI: 10.1002/Embj.201386537 |
0.285 |
|
| 2009 |
Fraser HB, Xie X. Common polymorphic transcript variation in human disease. Genome Research. 19: 567-75. PMID 19189928 DOI: 10.1101/Gr.083477.108 |
0.284 |
|
| 2012 |
Ye G, Xie X. Learning sparse gradients for variable selection and dimension reduction Machine Learning. 87: 303-355. DOI: 10.1007/S10994-012-5284-9 |
0.282 |
|
| 2011 |
Ye G, Xie X. Split Bregman method for large scale fused Lasso Computational Statistics & Data Analysis. 55: 1552-1569. DOI: 10.1016/J.Csda.2010.10.021 |
0.28 |
|
| 2010 |
Daily K, Rigor P, Christley S, Xie X, Baldi P. Data structures and compression algorithms for high-throughput sequencing technologies. Bmc Bioinformatics. 11: 514. PMID 20946637 DOI: 10.1186/1471-2105-11-514 |
0.277 |
|
| 2014 |
Ye G, Tang M, Cai JF, Nie Q, Xie X. Correction: Low-rank regularization for learning gene expression programs (PLoS ONE) Plos One. 9. DOI: 10.1371/Annotation/Ab5352A4-6B6F-44E6-8Ab5-6644794Bc247 |
0.273 |
|
| 2004 |
Mootha VK, Handschin C, Arlow D, Xie X, St Pierre J, Sihag S, Yang W, Altshuler D, Puigserver P, Patterson N, Willy PJ, Schulman IG, Heyman RA, Lander ES, Spiegelman BM. Erralpha and Gabpa/b specify PGC-1alpha-dependent oxidative phosphorylation gene expression that is altered in diabetic muscle. Proceedings of the National Academy of Sciences of the United States of America. 101: 6570-5. PMID 15100410 DOI: 10.1073/Pnas.0401401101 |
0.268 |
|
| 2013 |
Li Y, Xie X. A mixture model for expression deconvolution from RNA-seq in heterogeneous tissues. Bmc Bioinformatics. 14: S11. PMID 23735186 DOI: 10.1186/1471-2105-14-S5-S11 |
0.267 |
|
| 2006 |
Giallourakis C, Cao Z, Green T, Wachtel H, Xie X, Lopez-Illasaca M, Daly M, Rioux J, Xavier R. A molecular-properties-based approach to understanding PDZ domain proteins and PDZ ligands. Genome Research. 16: 1056-72. PMID 16825666 DOI: 10.1101/Gr.5285206 |
0.267 |
|
| 2010 |
Wang Y, Christley S, Mjolsness E, Xie X. Parameter inference for discretely observed stochastic kinetic models using stochastic gradient descent. Bmc Systems Biology. 4: 99. PMID 20663171 DOI: 10.1186/1752-0509-4-99 |
0.267 |
|
| 2013 |
Chen Y, Jia Z, Mercola D, Xie X. A gradient boosting algorithm for survival analysis via direct optimization of concordance index. Computational and Mathematical Methods in Medicine. 2013: 873595. PMID 24348746 DOI: 10.1155/2013/873595 |
0.262 |
|
| 2010 |
Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A, Dufresne M, Freitag M, Grabherr M, Henrissat B, Houterman PM, Kang S, Shim WB, Woloshuk C, Xie X, et al. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature. 464: 367-73. PMID 20237561 DOI: 10.1038/Nature08850 |
0.261 |
|
| 2019 |
Tang H, Chen X, Liu Y, Lu Z, You J, Yang M, Yao S, Zhao G, Xu Y, Chen T, Liu Y, Xie X. Clinically applicable deep learning framework for organs at risk delineation in CT images Nature Machine Intelligence. 1: 480-491. DOI: 10.1038/S42256-019-0099-Z |
0.261 |
|
| 2013 |
Yao C, Choi EA, Weng L, Xie X, Wan J, Xing Y, Moresco JJ, Tu PG, Yates JR, Shi Y. Overlapping and distinct functions of CstF64 and CstF64Ï„ in mammalian mRNA 3' processing. Rna (New York, N.Y.). 19: 1781-90. PMID 24149845 DOI: 10.1261/Rna.042317.113 |
0.259 |
|
| 2017 |
Vang YS, Xie X. HLA class I binding prediction via convolutional neural networks. Bioinformatics (Oxford, England). PMID 28444127 DOI: 10.1093/bioinformatics/btx264 |
0.254 |
|
| 2011 |
Xie X. The site-frequency spectrum of linked sites. Bulletin of Mathematical Biology. 73: 459-94. PMID 20349153 DOI: 10.1007/s11538-010-9534-3 |
0.252 |
|
| 2018 |
Duan T, Pinto JP, Xie X. Parallel Clustering of Single Cell Transcriptomic Data with Split-Merge Sampling on Dirichlet Process Mixtures. Bioinformatics (Oxford, England). PMID 30165477 DOI: 10.1093/Bioinformatics/Bty702 |
0.25 |
|
| 2008 |
Wu J, Sieglaff DH, Gervin J, Xie XS. Discovering regulatory motifs in the Plasmodium genome using comparative genomics. Bioinformatics (Oxford, England). 24: 1843-9. PMID 18611947 DOI: 10.1093/bioinformatics/btn348 |
0.249 |
|
| 2018 |
Zhu W, Huang Y, Zeng L, Chen X, Liu Y, Qian Z, Du N, Fan W, Xie X. AnatomyNet: Deep Learning for Fast and Fully Automated Whole-volume Segmentation of Head and Neck Anatomy. Medical Physics. PMID 30480818 DOI: 10.1002/Mp.13300 |
0.249 |
|
| 2009 |
Sieglaff DH, Dunn WA, Xie XS, Megy K, Marinotti O, James AA. Comparative genomics allows the discovery of cis-regulatory elements in mosquitoes. Proceedings of the National Academy of Sciences of the United States of America. 106: 3053-8. PMID 19211788 DOI: 10.1073/Pnas.0813264106 |
0.247 |
|
| 2010 |
Wang J, Cetindil I, Ji S, Li C, Xie X, Li G, Feng J. Interactive and fuzzy search: a dynamic way to explore MEDLINE. Bioinformatics (Oxford, England). 26: 2321-7. PMID 20624778 DOI: 10.1093/bioinformatics/btq414 |
0.237 |
|
| 2020 |
Fu L, Zhang L, Dollinger E, Peng Q, Nie Q, Xie X. Predicting transcription factor binding in single cells through deep learning. Science Advances. 6. PMID 33355120 DOI: 10.1126/sciadv.aba9031 |
0.228 |
|
| 2021 |
Cao Y, Fu L, Wu J, Peng Q, Nie Q, Zhang J, Xie X. SAILER: scalable and accurate invariant representation learning for single-cell ATAC-seq processing and integration. Bioinformatics (Oxford, England). 37: i317-i326. PMID 34252968 DOI: 10.1093/bioinformatics/btab303 |
0.225 |
|
| 2014 |
Potkin SG, Macciardi F, Erp Tv, Keator D, Guffanti G, Xie X. 6:00 Pm The Role Of Imaging Genetics In Unanticipated Schizophrenia Risk Gene Discovery: Tnik And Microrna-137 Schizophrenia Research. 153. DOI: 10.1016/S0920-9964(14)70199-9 |
0.222 |
|
| 2020 |
Ren J, Song K, Deng C, Ahlgren NA, Fuhrman JA, Li Y, Xie X, Poplin R, Sun F. Identifying viruses from metagenomic data using deep learning. Quantitative Biology (Beijing, China). 8: 64-77. PMID 34084563 DOI: 10.1007/s40484-019-0187-4 |
0.213 |
|
| 2022 |
Cao Y, Fu L, Wu J, Peng Q, Nie Q, Zhang J, Xie X. Integrated analysis of multimodal single-cell data with structural similarity. Nucleic Acids Research. PMID 36130281 DOI: 10.1093/nar/gkac781 |
0.207 |
|
| 2021 |
Fu L, Cao Y, Wu J, Peng Q, Nie Q, Xie X. UFold: fast and accurate RNA secondary structure prediction with deep learning. Nucleic Acids Research. PMID 34792173 DOI: 10.1093/nar/gkab1074 |
0.146 |
|
| 2023 |
Li N, Li C, Xie X, Liu G, Wang K, Zhang W, Fan J. Impairment of attention network function in posterior circulation ischemia-evidence from the Attention Network Test. Frontiers in Human Neuroscience. 16: 1001500. PMID 36684832 DOI: 10.3389/fnhum.2022.1001500 |
0.136 |
|
| 2021 |
Loveless TB, Grotts JH, Schechter MW, Forouzmand E, Carlson CK, Agahi BS, Liang G, Ficht M, Liu B, Xie X, Liu CC. Lineage tracing and analog recording in mammalian cells by single-site DNA writing. Nature Chemical Biology. PMID 33753928 DOI: 10.1038/s41589-021-00769-8 |
0.127 |
|
| 2021 |
Yuan ZZ, Xie XH, Gu H, Zhang WZ, Hu YQ, Yang YF, Tan ZP. Case Report: BAF-Opathies/SSRIDDs Due to a ACTL6A Variant, Previously Considered to Be Heart-Hand Syndrome. Frontiers in Cardiovascular Medicine. 8: 708033. PMID 34485408 DOI: 10.3389/fcvm.2021.708033 |
0.126 |
|
| 2000 |
Kitamoto T, Xie X, Wu CF, Salvaterra PM. Isolation and characterization of mutants for the vesicular acetylcholine transporter gene in Drosophila melanogaster. Journal of Neurobiology. 42: 161-71. PMID 10640324 DOI: 10.1002/(SICI)1097-4695(20000205)42:2<161::AID-NEU1>3.0.CO;2-P |
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