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Joshua H. Siegle - Publications

Affiliations: 
Neural Coding Allen Institute for Brain Science, Seattle, WA, United States 
Area:
visual cortex, electrophysiology, optogenetics
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Bennett C, Ouellette B, Ramirez TK, Cahoon A, Cabasco H, Browning Y, Lakunina A, Lynch GF, McBride EG, Belski H, Gillis R, Grasso C, Howard R, Johnson T, Loeffler H, ... ... Siegle JH, et al. SHIELD: Skull-shaped hemispheric implants enabling large-scale electrophysiology datasets in the mouse brain. Neuron. PMID 38996587 DOI: 10.1016/j.neuron.2024.06.015  0.31
2023 Newman JP, Zhang J, Cuevas-López A, Miller NJ, Honda T, van der Goes MH, Leighton AH, Carvalho F, Lopes G, Lakunina A, Siegle JH, Harnett MT, Wilson MA, Voigts J. A unified open-source platform for multimodal neural recording and perturbation during naturalistic behavior. Biorxiv : the Preprint Server For Biology. PMID 37693443 DOI: 10.1101/2023.08.30.554672  0.759
2023 Ye Z, Shelton AM, Shaker JR, Boussard J, Colonell J, Manavi S, Chen S, Windolf C, Hurwitz C, Namima T, Pedraja F, Weiss S, Raducanu B, Ness TV, Einevoll GT, ... ... Siegle JH, et al. Ultra-high density electrodes improve detection, yield, and cell type specificity of brain recordings. Biorxiv : the Preprint Server For Biology. PMID 37662298 DOI: 10.1101/2023.08.23.554527  0.38
2023 Wei Y, Nandi A, Jia X, Siegle JH, Denman D, Lee SY, Buchin A, Geit WV, Mosher CP, Olsen S, Anastassiou CA. Associations between , and cell classes in mouse primary visual cortex. Biorxiv : the Preprint Server For Biology. PMID 37131710 DOI: 10.1101/2023.04.17.532851  0.75
2023 Wei Y, Nandi A, Jia X, Siegle JH, Denman D, Lee SY, Buchin A, Van Geit W, Mosher CP, Olsen S, Anastassiou CA. Associations between in vitro, in vivo and in silico cell classes in mouse primary visual cortex. Nature Communications. 14: 2344. PMID 37095130 DOI: 10.1038/s41467-023-37844-8  0.752
2023 Gandhi SR, Mayner WGP, Marshall W, Billeh YN, Bennett C, Gale SD, Mochizuki C, Siegle JH, Olsen S, Tononi G, Koch C, Arkhipov A. A survey of neurophysiological differentiation across mouse visual brain areas and timescales. Frontiers in Computational Neuroscience. 17: 1040629. PMID 36994445 DOI: 10.3389/fncom.2023.1040629  0.337
2022 Durand S, Heller GR, Ramirez TK, Luviano JA, Williford A, Sullivan DT, Cahoon AJ, Farrell C, Groblewski PA, Bennett C, Siegle JH, Olsen SR. Acute head-fixed recordings in awake mice with multiple Neuropixels probes. Nature Protocols. PMID 36477710 DOI: 10.1038/s41596-022-00768-6  0.32
2022 Jia X, Siegle JH, Durand S, Heller G, Ramirez TK, Koch C, Olsen SR. Multi-regional module-based signal transmission in mouse visual cortex. Neuron. PMID 35143752 DOI: 10.1016/j.neuron.2022.01.027  0.48
2021 Lecoq J, Oliver M, Siegle JH, Orlova N, Ledochowitsch P, Koch C. Removing independent noise in systems neuroscience data using DeepInterpolation. Nature Methods. 18: 1401-1408. PMID 34650233 DOI: 10.1038/s41592-021-01285-2  0.711
2021 Petersen PC, Siegle JH, Steinmetz NA, Mahallati S, Buzsáki G. CellExplorer: A framework for visualizing and characterizing single neurons. Neuron. PMID 34592168 DOI: 10.1016/j.neuron.2021.09.002  0.302
2021 Siegle JH, Ledochowitsch P, Jia X, Millman DJ, Ocker GK, Caldejon S, Casal L, Cho A, Denman DJ, Durand S, Groblewski PA, Heller G, Kato I, Kivikas S, Lecoq J, et al. Reconciling functional differences in populations of neurons recorded with two-photon imaging and electrophysiology. Elife. 10. PMID 34270411 DOI: 10.7554/eLife.69068  0.773
2021 Siegle JH, Jia X, Durand S, Gale S, Bennett C, Graddis N, Heller G, Ramirez TK, Choi H, Luviano JA, Groblewski PA, Ahmed R, Arkhipov A, Bernard A, Billeh YN, et al. Survey of spiking in the mouse visual system reveals functional hierarchy. Nature. PMID 33473216 DOI: 10.1038/s41586-020-03171-x  0.769
2020 Billeh YN, Cai B, Gratiy SL, Dai K, Iyer R, Gouwens NW, Abbasi-Asl R, Jia X, Siegle JH, Olsen SR, Koch C, Mihalas S, Arkhipov A. Systematic Integration of Structural and Functional Data into Multi-scale Models of Mouse Primary Visual Cortex. Neuron. PMID 32142648 DOI: 10.1016/J.Neuron.2020.01.040  0.467
2019 Putzeys J, Raducanu BC, Carton A, De Ceulaer J, Karsh B, Siegle JH, Van Helleputte N, Harris TD, Dutta B, Musa S, Lopez CM. Neuropixels Data-Acquisition System: A Scalable Platform for Parallel Recording of 10,000+ Electrophysiological Signals. Ieee Transactions On Biomedical Circuits and Systems. PMID 31545742 DOI: 10.1109/TBCAS.2019.2943077  0.314
2019 Jia X, Siegle JH, Bennett C, Gale SD, Denman DJ, Koch C, Olsen SR. High-density extracellular probes reveal dendritic backpropagation and facilitate neuron classification. Journal of Neurophysiology. PMID 30840526 DOI: 10.1152/Jn.00680.2018  0.776
2017 Jun JJ, Steinmetz NA, Siegle JH, Denman DJ, Bauza M, Barbarits B, Lee AK, Anastassiou CA, Andrei A, Aydın Ç, Barbic M, Blanche TJ, Bonin V, Couto J, Dutta B, et al. Fully integrated silicon probes for high-density recording of neural activity. Nature. 551: 232-236. PMID 29120427 DOI: 10.1038/Nature24636  0.763
2017 Siegle JH, Cuevas López A, Patel Y, Abramov K, Ohayon S, Voigts J. Open Ephys: An open-source, plugin-based platform for multichannel electrophysiology. Journal of Neural Engineering. PMID 28169219 DOI: 10.1088/1741-2552/Aa5Eea  0.72
2016 Denman DJ, Siegle JH, Koch C, Reid RC, Blanche TJ. Spatial organization of chromatic pathways in the mouse dorsal lateral geniculate nucleus. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 27986926 DOI: 10.1523/Jneurosci.1742-16.2016  0.749
2015 Teeters JL, Godfrey K, Young R, Dang C, Friedsam C, Wark B, Asari H, Peron S, Li N, Peyrache A, Denisov G, Siegle JH, Olsen SR, Martin C, Chun M, et al. Neurodata Without Borders: Creating a Common Data Format for Neurophysiology. Neuron. 88: 629-634. PMID 26590340 DOI: 10.1016/J.Neuron.2015.10.025  0.707
2015 Pak N, Siegle JH, Kinney JP, Denman DJ, Blanche TJ, Boyden ES. Closed-loop, ultraprecise, automated craniotomies. Journal of Neurophysiology. 113: 3943-53. PMID 25855700 DOI: 10.1152/Jn.01055.2014  0.755
2015 Pritchett DL, Siegle JH, Deister CA, Moore CI. For things needing your attention: the role of neocortical gamma in sensory perception. Current Opinion in Neurobiology. 31: 254-63. PMID 25770854 DOI: 10.1016/j.conb.2015.02.004  0.777
2015 Siegle JH, Hale GJ, Newman JP, Voigts J. Neural ensemble communities: open-source approaches to hardware for large-scale electrophysiology. Current Opinion in Neurobiology. 32: 53-59. PMID 25528614 DOI: 10.1016/J.Conb.2014.11.004  0.758
2014 Brunetti PM, Wimmer RD, Liang L, Siegle JH, Voigts J, Wilson M, Halassa MM. Design and fabrication of ultralight weight, adjustable multi-electrode probes for electrophysiological recordings in mice. Journal of Visualized Experiments : Jove. e51675. PMID 25225749 DOI: 10.3791/51675  0.784
2014 Siegle JH, Pritchett DL, Moore CI. Gamma-range synchronization of fast-spiking interneurons can enhance detection of tactile stimuli. Nature Neuroscience. 17: 1371-9. PMID 25151266 DOI: 10.1038/nn.3797  0.673
2014 Siegle JH, Wilson MA. Enhancement of encoding and retrieval functions through theta phase-specific manipulation of hippocampus. Elife. 3: e03061. PMID 25073927 DOI: 10.7554/Elife.03061  0.48
2014 Siegle JH, Wilson MA. Author response: Enhancement of encoding and retrieval functions through theta phase-specific manipulation of hippocampus Elife. DOI: 10.7554/Elife.03061.011  0.446
2013 Voigts J, Siegle JH, Pritchett DL, Moore CI. The flexDrive: an ultra-light implant for optical control and highly parallel chronic recording of neuronal ensembles in freely moving mice. Frontiers in Systems Neuroscience. 7: 8. PMID 23717267 DOI: 10.3389/fnsys.2013.00008  0.787
2012 Carlén M, Meletis K, Siegle JH, Cardin JA, Futai K, Vierling-Claassen D, Rühlmann C, Jones SR, Deisseroth K, Sheng M, Moore CI, Tsai LH. A critical role for NMDA receptors in parvalbumin interneurons for gamma rhythm induction and behavior. Molecular Psychiatry. 17: 537-48. PMID 21468034 DOI: 10.1038/Mp.2011.31  0.68
2011 Siegle JH, Carlen M, Meletis K, Tsai LH, Moore CI, Ritt J. Chronically implanted hyperdrive for cortical recording and optogenetic control in behaving mice. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2011: 7529-32. PMID 22256080 DOI: 10.1109/IEMBS.2011.6091856  0.766
2011 Siegle JH, Moore CI. Cortical circuits: finding balance in the brain. Current Biology : Cb. 21: R956-7. PMID 22153164 DOI: 10.1016/J.Cub.2011.10.026  0.529
2011 Halassa MM, Siegle JH, Ritt JT, Ting JT, Feng G, Moore CI. Selective optical drive of thalamic reticular nucleus generates thalamic bursts and cortical spindles. Nature Neuroscience. 14: 1118-20. PMID 21785436 DOI: 10.1038/Nn.2880  0.763
2010 Knoblich U, Siegle JH, Pritchett DL, Moore CI. What do we gain from gamma? Local dynamic gain modulation drives enhanced efficacy and efficiency of signal transmission. Frontiers in Human Neuroscience. 4: 185. PMID 21151350 DOI: 10.3389/Fnhum.2010.00185  0.777
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