DUSTIN E SCHONES - Publications

Affiliations: 
City of Hope Medical Center, Duarte, CA, United States 

42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Leung A, Trac C, Kato H, Costello KR, Chen Z, Natarajan R, Schones DE. LTRs activated by Epstein-Barr virus-induced transformation of B cells alter the transcriptome. Genome Research. PMID 30381291 DOI: 10.1101/gr.233585.117  0.48
2018 Li S, Ali S, Duan X, Liu S, Du J, Liu C, Dai H, Zhou M, Zhou L, Yang L, Chu P, Li L, Bhatia R, Schones DE, Wu X, et al. JMJD1B Demethylates H4R3me2s and H3K9me2 to Facilitate Gene Expression for Development of Hematopoietic Stem and Progenitor Cells. Cell Reports. 23: 389-403. PMID 29641999 DOI: 10.1016/j.celrep.2018.03.051  0.32
2017 Du J, Tian J, Ding L, Trac C, Xia B, Sun S, Schones DE, Huang W. Vertical sleeve gastrectomy reverses diet-induced gene-regulatory changes impacting lipid metabolism. Scientific Reports. 7: 5274. PMID 28706189 DOI: 10.1038/s41598-017-05349-2  0.48
2016 Pan M, Reid MA, Lowman XH, Kulkarni RP, Tran TQ, Liu X, Yang Y, Hernandez-Davies JE, Rosales KK, Li H, Hugo W, Song C, Xu X, Schones DE, Ann DK, et al. Regional glutamine deficiency in tumours promotes dedifferentiation through inhibition of histone demethylation. Nature Cell Biology. PMID 27617932 DOI: 10.1038/ncb3410  0.8
2016 Du J, Leung A, Trac C, Lee M, Parks BW, Lusis AJ, Natarajan R, Schones DE. Chromatin variation associated with liver metabolism is mediated by transposable elements. Epigenetics & Chromatin. 9: 28. PMID 27398095 DOI: 10.1186/s13072-016-0078-0  0.48
2016 Leung A, Trac C, Du J, Natarajan R, Schones DE. Persistent chromatin modifications induced by high fat diet. The Journal of Biological Chemistry. PMID 27006400 DOI: 10.1074/jbc.M115.711028  0.8
2016 Chimge NO, Little GH, Baniwal SK, Adisetiyo H, Xie Y, Zhang T, O'Laughlin A, Liu ZY, Ulrich P, Martin A, Mhawech-Fauceglia P, Ellis MJ, Tripathy D, Groshen S, Liang C, ... ... Schones DE, et al. RUNX1 prevents oestrogen-mediated AXIN1 suppression and β-catenin activation in ER-positive breast cancer. Nature Communications. 7: 10751. PMID 26916619 DOI: 10.1038/ncomms10751  0.8
2015 Schones DE, Leung A, Natarajan R. Chromatin Modifications Associated With Diabetes and Obesity. Arteriosclerosis, Thrombosis, and Vascular Biology. 35: 1557-61. PMID 26044585 DOI: 10.1161/ATVBAHA.115.305041  0.8
2015 Li Z, Dai H, Martos SN, Xu B, Gao Y, Li T, Zhu G, Schones DE, Wang Z. Distinct roles of DNMT1-dependent and DNMT1-independent methylation patterns in the genome of mouse embryonic stem cells. Genome Biology. 16: 115. PMID 26032981 DOI: 10.1186/s13059-015-0685-2  0.8
2014 Jose CC, Xu B, Jagannathan L, Trac C, Mallela RK, Hattori T, Lai D, Koide S, Schones DE, Cuddapah S. Epigenetic dysregulation by nickel through repressive chromatin domain disruption. Proceedings of the National Academy of Sciences of the United States of America. 111: 14631-6. PMID 25246589 DOI: 10.1073/pnas.1406923111  0.8
2014 Schones DE, Chen X, Trac C, Setten R, Paddison PJ. G9a/GLP-dependent H3K9me2 patterning alters chromatin structure at CpG islands in hematopoietic progenitors. Epigenetics & Chromatin. 7: 23. PMID 25237399 DOI: 10.1186/1756-8935-7-23  0.6
2014 Leung A, Parks BW, Du J, Trac C, Setten R, Chen Y, Brown K, Lusis AJ, Natarajan R, Schones DE. Open chromatin profiling in mice livers reveals unique chromatin variations induced by high fat diet. The Journal of Biological Chemistry. 289: 23557-67. PMID 25006255 DOI: 10.1074/jbc.M114.581439  0.8
2014 Little GH, Baniwal SK, Adisetiyo H, Groshen S, Chimge NO, Kim SY, Khalid O, Hawes D, Jones JO, Pinski J, Schones DE, Frenkel B. Differential effects of RUNX2 on the androgen receptor in prostate cancer: synergistic stimulation of a gene set exemplified by SNAI2 and subsequent invasiveness. Cancer Research. 74: 2857-68. PMID 24648349 DOI: 10.1158/0008-5472.CAN-13-2003  0.8
2013 Byeon B, Wang W, Barski A, Ranallo RT, Bao K, Schones DE, Zhao K, Wu C, Wu WH. The ATP-dependent chromatin remodeling enzyme Fun30 represses transcription by sliding promoter-proximal nucleosomes. The Journal of Biological Chemistry. 288: 23182-93. PMID 23779104 DOI: 10.1074/jbc.M113.471979  0.8
2013 Leung A, Trac C, Jin W, Lanting L, Akbany A, Sætrom P, Schones DE, Natarajan R. Novel long noncoding RNAs are regulated by angiotensin II in vascular smooth muscle cells. Circulation Research. 113: 266-78. PMID 23697773 DOI: 10.1161/CIRCRESAHA.112.300849  0.8
2013 Zhang S, Schones DE, Malicet C, Rochman M, Zhou M, Foisner R, Bustin M. High mobility group protein N5 (HMGN5) and lamina-associated polypeptide 2α (LAP2α) interact and reciprocally affect their genome-wide chromatin organization. The Journal of Biological Chemistry. 288: 18104-9. PMID 23673662 DOI: 10.1074/jbc.C113.469544  0.48
2013 Xu B, Schones DE, Wang Y, Liang H, Li G. A structural-based strategy for recognition of transcription factor binding sites. Plos One. 8: e52460. PMID 23320072 DOI: 10.1371/journal.pone.0052460  0.4
2011 Abuhatzira L, Shamir A, Schones DE, Schäffer AA, Bustin M. The chromatin-binding protein HMGN1 regulates the expression of methyl CpG-binding protein 2 (MECP2) and affects the behavior of mice. The Journal of Biological Chemistry. 286: 42051-62. PMID 22009741 DOI: 10.1074/jbc.M111.300541  0.8
2011 Schones DE, Cui K, Cuddapah S. Genome-wide approaches to studying yeast chromatin modifications. Methods in Molecular Biology (Clifton, N.J.). 759: 61-71. PMID 21863481 DOI: 10.1007/978-1-61779-173-4_4  0.8
2011 Hu G, Schones DE, Cui K, Ybarra R, Northrup D, Tang Q, Gattinoni L, Restifo NP, Huang S, Zhao K. Regulation of nucleosome landscape and transcription factor targeting at tissue-specific enhancers by BRG1. Genome Research. 21: 1650-8. PMID 21795385 DOI: 10.1101/gr.121145.111  0.8
2011 Cuddapah S, Schones DE, Cui K, Roh TY, Barski A, Wei G, Rochman M, Bustin M, Zhao K. Genomic profiling of HMGN1 reveals an association with chromatin at regulatory regions. Molecular and Cellular Biology. 31: 700-9. PMID 21173166 DOI: 10.1128/MCB.00740-10  0.8
2010 Gan Q, Schones DE, Ho Eun S, Wei G, Cui K, Zhao K, Chen X. Monovalent and unpoised status of most genes in undifferentiated cell-enriched Drosophila testis. Genome Biology. 11: R42. PMID 20398323 DOI: 10.1186/gb-2010-11-4-r42  1
2009 Cuddapah S, Barski A, Cui K, Schones DE, Wang Z, Wei G, Zhao K. Native chromatin preparation and Illumina/Solexa library construction. Cold Spring Harbor Protocols. 2009: pdb.prot5237. PMID 20147195 DOI: 10.1101/pdb.prot5237  0.8
2009 Barski A, Jothi R, Cuddapah S, Cui K, Roh TY, Schones DE, Zhao K. Chromatin poises miRNA- and protein-coding genes for expression. Genome Research. 19: 1742-51. PMID 19713549 DOI: 10.1101/gr.090951.109  0.8
2009 Wang Z, Zang C, Cui K, Schones DE, Barski A, Peng W, Zhao K. Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes. Cell. 138: 1019-31. PMID 19698979 DOI: 10.1016/j.cell.2009.06.049  0.8
2009 Lin B, Wang J, Hong X, Yan X, Hwang D, Cho JH, Yi D, Utleg AG, Fang X, Schones DE, Zhao K, Omenn GS, Hood L. Integrated expression profiling and ChIP-seq analyses of the growth inhibition response program of the androgen receptor. Plos One. 4: e6589. PMID 19668381 DOI: 10.1371/journal.pone.0006589  0.8
2009 Zang C, Schones DE, Zeng C, Cui K, Zhao K, Peng W. A clustering approach for identification of enriched domains from histone modification ChIP-Seq data. Bioinformatics (Oxford, England). 25: 1952-8. PMID 19505939 DOI: 10.1093/bioinformatics/btp340  1
2009 Rosenfeld JA, Wang Z, Schones DE, Zhao K, DeSalle R, Zhang MQ. Determination of enriched histone modifications in non-genic portions of the human genome. Bmc Genomics. 10: 143. PMID 19335899 DOI: 10.1186/1471-2164-10-143  0.8
2009 Wang Z, Schones DE, Zhao K. Characterization of human epigenomes. Current Opinion in Genetics & Development. 19: 127-34. PMID 19299119 DOI: 10.1016/j.gde.2009.02.001  1
2009 Zhu J, Davidson TS, Wei G, Jankovic D, Cui K, Schones DE, Guo L, Zhao K, Shevach EM, Paul WE. Down-regulation of Gfi-1 expression by TGF-beta is important for differentiation of Th17 and CD103+ inducible regulatory T cells. The Journal of Experimental Medicine. 206: 329-41. PMID 19188499 DOI: 10.1084/jem.20081666  1
2009 Wei G, Wei L, Zhu J, Zang C, Hu-Li J, Yao Z, Cui K, Kanno Y, Roh TY, Watford WT, Schones DE, Peng W, Sun HW, Paul WE, O'Shea JJ, et al. Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells. Immunity. 30: 155-67. PMID 19144320 DOI: 10.1016/j.immuni.2008.12.009  1
2009 Cui K, Zang C, Roh TY, Schones DE, Childs RW, Peng W, Zhao K. Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation. Cell Stem Cell. 4: 80-93. PMID 19128795 DOI: 10.1016/j.stem.2008.11.011  1
2009 Cuddapah S, Jothi R, Schones DE, Roh TY, Cui K, Zhao K. Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains. Genome Research. 19: 24-32. PMID 19056695 DOI: 10.1101/gr.082800.108  0.8
2008 Liao W, Schones DE, Oh J, Cui Y, Cui K, Roh TY, Zhao K, Leonard WJ. Priming for T helper type 2 differentiation by interleukin 2-mediated induction of interleukin 4 receptor alpha-chain expression. Nature Immunology. 9: 1288-96. PMID 18820682 DOI: 10.1038/ni.1656  1
2008 Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, Cuddapah S, Cui K, Roh TY, Peng W, Zhang MQ, Zhao K. Combinatorial patterns of histone acetylations and methylations in the human genome. Nature Genetics. 40: 897-903. PMID 18552846 DOI: 10.1038/ng.154  0.8
2008 Schones DE, Cui K, Cuddapah S, Roh TY, Barski A, Wang Z, Wei G, Zhao K. Dynamic regulation of nucleosome positioning in the human genome. Cell. 132: 887-98. PMID 18329373 DOI: 10.1016/j.cell.2008.02.022  0.8
2008 Schones DE, Zhao K. Genome-wide approaches to studying chromatin modifications. Nature Reviews. Genetics. 9: 179-91. PMID 18250624 DOI: 10.1038/nrg2270  1
2008 Eguchi J, Yan QW, Schones DE, Kamal M, Hsu CH, Zhang MQ, Crawford GE, Rosen ED. Interferon regulatory factors are transcriptional regulators of adipogenesis. Cell Metabolism. 7: 86-94. PMID 18177728 DOI: 10.1016/j.cmet.2007.11.002  0.48
2007 Mignone JL, Roig-Lopez JL, Fedtsova N, Schones DE, Manganas LN, Maletic-Savatic M, Keyes WM, Mills AA, Gleiberman A, Zhang MQ, Enikolopov G. Neural potential of a stem cell population in the hair follicle. Cell Cycle (Georgetown, Tex.). 6: 2161-70. PMID 17873521  0.8
2007 Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K. High-Resolution Profiling of Histone Methylations in the Human Genome Cell. 129: 823-837. PMID 17512414 DOI: 10.1016/j.cell.2007.05.009  0.8
2007 Schones DE, Smith AD, Zhang MQ. Statistical significance of cis-regulatory modules. Bmc Bioinformatics. 8: 19. PMID 17241466 DOI: 10.1186/1471-2105-8-19  0.48
2005 Schones DE, Sumazin P, Zhang MQ. Similarity of position frequency matrices for transcription factor binding sites. Bioinformatics (Oxford, England). 21: 307-13. PMID 15319260 DOI: 10.1093/bioinformatics/bth480  0.48
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