| Year |
Citation |
Score |
| 2022 |
Kobayashi K, Kawakami K, Kusakizako T, Miyauchi H, Tomita A, Kobayashi K, Shihoya W, Yamashita K, Nishizawa T, Kato HE, Inoue A, Nureki O. Endogenous ligand recognition and structural transition of a human PTH receptor. Molecular Cell. PMID 35932760 DOI: 10.1016/j.molcel.2022.07.003 |
0.651 |
|
| 2022 |
Ma XF, Wang TT, Wang WH, Guan L, Guo CR, Li XH, Lei YT, Fan YZ, Yang XN, Hattori M, Nureki O, Zhu MX, Yu Y, Tian Y, Wang J. The long β2,3-sheets encoded by redundant sequences play an integral role in the channel function of P2X7 receptors. The Journal of Biological Chemistry. 102002. PMID 35504351 DOI: 10.1016/j.jbc.2022.102002 |
0.66 |
|
| 2022 |
Kishi KE, Kim YS, Fukuda M, Inoue M, Kusakizako T, Wang PY, Ramakrishnan C, Byrne EFX, Thadhani E, Paggi JM, Matsui TE, Yamashita K, Nagata T, Konno M, Quirin S, ... ... Nureki O, et al. Structural basis for channel conduction in the pump-like channelrhodopsin ChRmine. Cell. PMID 35114111 DOI: 10.1016/j.cell.2022.01.007 |
0.694 |
|
| 2021 |
Jin F, Sun M, Fujii T, Yamada Y, Wang J, Maturana AD, Wada M, Su S, Ma J, Takeda H, Kusakizako T, Tomita A, Nakada-Nakura Y, Liu K, Uemura T, ... ... Nureki O, et al. The structure of MgtE in the absence of magnesium provides new insights into channel gating. Plos Biology. 19: e3001231. PMID 33905418 DOI: 10.1371/journal.pbio.3001231 |
0.69 |
|
| 2021 |
Castellano S, Claxton DP, Ficici E, Kusakizako T, Stix R, Zhou W, Nureki O, Mchaourab HS, Faraldo-Gómez JD. Conserved binding site in the N-lobe of prokaryotic MATE transporters suggests a role for Na in ion-coupled drug efflux. The Journal of Biological Chemistry. 296: 100262. PMID 33837745 DOI: 10.1016/j.jbc.2021.100262 |
0.369 |
|
| 2021 |
Oda K, Nomura T, Nakane T, Yamashita K, Inoue K, Ito S, Vierock J, Hirata K, Maturana AD, Katayama K, Ikuta T, Ishigami I, Izume T, Umeda R, Eguma R, ... ... Nureki O, et al. Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin. Elife. 10. PMID 33752801 DOI: 10.7554/eLife.62389 |
0.358 |
|
| 2021 |
Castellano S, Claxton DP, Ficici E, Kusakizako T, Stix R, Zhou W, Nureki O, Mchaourab HS, Faraldo-Gómez JD. Conserved binding site in the N-lobe of prokaryotic MATE transporters suggests a role for Na in ion-coupled drug efflux. The Journal of Biological Chemistry. PMID 33402425 DOI: 10.1074/jbc.RA120.016792 |
0.369 |
|
| 2020 |
Nakamura R, Numata T, Kasuya G, Yokoyama T, Nishizawa T, Kusakizako T, Kato T, Hagino T, Dohmae N, Inoue M, Watanabe K, Ichijo H, Kikkawa M, Shirouzu M, Jentsch TJ, ... ... Nureki O, et al. Cryo-EM structure of the volume-regulated anion channel LRRC8D isoform identifies features important for substrate permeation. Communications Biology. 3: 240. PMID 32415200 DOI: 10.1038/s42003-020-0951-z |
0.407 |
|
| 2020 |
Tanaka Y, Hipolito CJ, Maturana AD, Ito K, Kuroda T, Higuchi T, Katoh T, Kato HE, Hattori M, Kumazaki K, Tsukazaki T, Ishitani R, Suga H, Nureki O. Author Correction: Structural basis for the drug extrusion mechanism by a MATE multidrug transporter. Nature. PMID 32001809 DOI: 10.1038/S41586-019-1762-6 |
0.758 |
|
| 2019 |
Jia Y, Zhao Y, Kusakizako T, Wang Y, Pan C, Zhang Y, Nureki O, Hattori M, Yan Z. TMC1 and TMC2 Proteins Are Pore-Forming Subunits of Mechanosensitive Ion Channels. Neuron. PMID 31761710 DOI: 10.1016/j.neuron.2019.10.017 |
0.661 |
|
| 2019 |
Shihoya W, Inoue K, Singh M, Konno M, Hososhima S, Yamashita K, Ikeda K, Higuchi A, Izume T, Okazaki S, Hashimoto M, Mizutori R, Tomida S, Yamauchi Y, Abe-Yoshizumi R, ... ... Nureki O, et al. Crystal structure of heliorhodopsin. Nature. PMID 31554965 DOI: 10.1038/S41586-019-1604-6 |
0.372 |
|
| 2018 |
Oda K, Vierock J, Oishi S, Rodriguez-Rozada S, Taniguchi R, Yamashita K, Wiegert JS, Nishizawa T, Hegemann P, Nureki O. Crystal structure of the red light-activated channelrhodopsin Chrimson. Nature Communications. 9: 3949. PMID 30258177 DOI: 10.1038/s41467-018-06421-9 |
0.352 |
|
| 2018 |
Cheng C, Kamiya M, Takemoto M, Ishitani R, Nureki O, Yoshida N, Hayashi S. An Atomistic Model of a Precursor State of Light-Induced Channel Opening of Channelrhodopsin. Biophysical Journal. PMID 30236783 DOI: 10.1016/j.bpj.2018.08.024 |
0.389 |
|
| 2018 |
Kasuya G, Nakane T, Yokoyama T, Jia Y, Inoue M, Watanabe K, Nakamura R, Nishizawa T, Kusakizako T, Tsutsumi A, Yanagisawa H, Dohmae N, Hattori M, Ichijo H, Yan Z, ... ... Nureki O, et al. Cryo-EM structures of the human volume-regulated anion channel LRRC8. Nature Structural & Molecular Biology. PMID 30127360 DOI: 10.1038/s41594-018-0109-6 |
0.681 |
|
| 2018 |
Maruyama T, Imai S, Kusakizako T, Hattori M, Ishitani R, Nureki O, Ito K, Maturana AD, Shimada I, Osawa M. Functional roles of Mg binding sites in ion-dependent gating of a Mg channel, MgtE, revealed by solution NMR. Elife. 7. PMID 29611805 DOI: 10.7554/eLife.31596 |
0.626 |
|
| 2017 |
Kasuya G, Yamaura T, Ma XB, Nakamura R, Takemoto M, Nagumo H, Tanaka E, Dohmae N, Nakane T, Yu Y, Ishitani R, Matsuzaki O, Hattori M, Nureki O. Structural insights into the competitive inhibition of the ATP-gated P2X receptor channel. Nature Communications. 8: 876. PMID 29026074 DOI: 10.1038/s41467-017-00887-9 |
0.677 |
|
| 2017 |
Taniguchi R, Inoue A, Sayama M, Uwamizu A, Yamashita K, Hirata K, Yoshida M, Tanaka Y, Kato HE, Nakada-Nakura Y, Otani Y, Nishizawa T, Doi T, Ohwada T, Ishitani R, ... ... Nureki O, et al. Structural insights into ligand recognition by the lysophosphatidic acid receptor LPA6. Nature. PMID 28792932 DOI: 10.1038/Nature23448 |
0.657 |
|
| 2017 |
Tomita A, Zhang M, Jin F, Zhuang W, Takeda H, Maruyama T, Osawa M, Hashimoto KI, Kawasaki H, Ito K, Dohmae N, Ishitani R, Shimada I, Yan Z, Hattori M, ... Nureki O, et al. ATP-dependent modulation of MgtE in Mg(2+) homeostasis. Nature Communications. 8: 148. PMID 28747715 DOI: 10.1038/s41467-017-00082-w |
0.672 |
|
| 2017 |
Kasuya G, Fujiwara Y, Tsukamoto H, Morinaga S, Ryu S, Touhara K, Ishitani R, Furutani Y, Hattori M, Nureki O. Structural insights into the nucleotide base specificity of P2X receptors. Scientific Reports. 7: 45208. PMID 28332633 DOI: 10.1038/srep45208 |
0.684 |
|
| 2016 |
Kasuya G, Hiraizumi M, Maturana AD, Kumazaki K, Fujiwara Y, Liu K, Nakada-Nakura Y, Iwata S, Tsukada K, Komori T, Uemura S, Goto Y, Nakane T, Takemoto M, Kato HE, ... ... Nureki O, et al. Crystal structures of the TRIC trimeric intracellular cation channel orthologues. Cell Research. 26: 1288-1301. PMID 27909292 DOI: 10.1038/Cr.2016.140 |
0.78 |
|
| 2016 |
Kato HE, Inoue K, Kandori H, Nureki O. The light-driven sodium ion pump: A new player in rhodopsin research. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 27859420 DOI: 10.1002/Bies.201600065 |
0.666 |
|
| 2016 |
Abe-Yoshizumi R, Inoue K, Kato HE, Nureki O, Kandori H. Role of Asn112 in a light-driven sodium ion-pumping rhodopsin. Biochemistry. PMID 27673340 DOI: 10.1021/Acs.Biochem.6B00741 |
0.649 |
|
| 2016 |
Tsuchiya H, Doki S, Takemoto M, Ikuta T, Higuchi T, Fukui K, Usuda Y, Tabuchi E, Nagatoishi S, Tsumoto K, Nishizawa T, Ito K, Dohmae N, Ishitani R, Nureki O. Structural basis for amino acid export by DMT superfamily transporter YddG. Nature. PMID 27281193 DOI: 10.1038/nature17991 |
0.388 |
|
| 2016 |
Minato Y, Suzuki S, Hara T, Kofuku Y, Kasuya G, Fujiwara Y, Igarashi S, Suzuki EI, Nureki O, Hattori M, Ueda T, Shimada I. Conductance of P2X4 purinergic receptor is determined by conformational equilibrium in the transmembrane region. Proceedings of the National Academy of Sciences of the United States of America. PMID 27071117 DOI: 10.1073/pnas.1600519113 |
0.665 |
|
| 2016 |
Kasuya G, Fujiwara Y, Takemoto M, Dohmae N, Nakada-Nakura Y, Ishitani R, Hattori M, Nureki O. Structural Insights into Divalent Cation Modulations of ATP-Gated P2X Receptor Channels. Cell Reports. 14: 932-944. PMID 26804916 DOI: 10.1016/j.celrep.2015.12.087 |
0.626 |
|
| 2016 |
Konno M, Kato Y, Kato HE, Inoue K, Nureki O, Kandori H. Mutant of a Light-Driven Sodium Ion Pump Can Transport Cesium Ions. The Journal of Physical Chemistry Letters. 7: 51-5. PMID 26740141 DOI: 10.1021/Acs.Jpclett.5B02385 |
0.655 |
|
| 2015 |
Tanaka Y, Sugano Y, Takemoto M, Mori T, Furukawa A, Kusakizako T, Kumazaki K, Kashima A, Ishitani R, Sugita Y, Nureki O, Tsukazaki T. Crystal Structures of SecYEG in Lipidic Cubic Phase Elucidate a Precise Resting and a Peptide-Bound State. Cell Reports. PMID 26586438 DOI: 10.1016/j.celrep.2015.10.025 |
0.384 |
|
| 2015 |
Taniguchi R, Kato HE, Font J, Deshpande CN, Wada M, Ito K, Ishitani R, Jormakka M, Nureki O. Outward- and inward-facing structures of a putative bacterial transition-metal transporter with homology to ferroportin. Nature Communications. 6: 8545. PMID 26461048 DOI: 10.1038/Ncomms9545 |
0.665 |
|
| 2015 |
Takemoto M, Kato HE, Koyama M, Ito J, Kamiya M, Hayashi S, Maturana AD, Deisseroth K, Ishitani R, Nureki O. Molecular Dynamics of Channelrhodopsin at the Early Stages of Channel Opening. Plos One. 10: e0131094. PMID 26114863 DOI: 10.1371/Journal.Pone.0131094 |
0.68 |
|
| 2015 |
Kato HE, Kamiya M, Sugo S, Ito J, Taniguchi R, Orito A, Hirata K, Inutsuka A, Yamanaka A, Maturana AD, Ishitani R, Sudo Y, Hayashi S, Nureki O. Atomistic design of microbial opsin-based blue-shifted optogenetics tools. Nature Communications. 6: 7177. PMID 25975962 DOI: 10.1038/Ncomms8177 |
0.663 |
|
| 2015 |
Fukuda M, Takeda H, Kato HE, Doki S, Ito K, Maturana AD, Ishitani R, Nureki O. Structural basis for dynamic mechanism of nitrate/nitrite antiport by NarK. Nature Communications. 6: 7097. PMID 25959928 DOI: 10.1038/Ncomms8097 |
0.689 |
|
| 2015 |
Kato HE, Inoue K, Abe-Yoshizumi R, Kato Y, Ono H, Konno M, Hososhima S, Ishizuka T, Hoque MR, Kunitomo H, Ito J, Yoshizawa S, Yamashita K, Takemoto M, Nishizawa T, ... ... Nureki O, et al. Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump. Nature. 521: 48-53. PMID 25849775 DOI: 10.1038/Nature14322 |
0.681 |
|
| 2015 |
Inaguma A, Tsukamoto H, Kato HE, Kimura T, Ishizuka T, Oishi S, Yawo H, Nureki O, Furutani Y. Chimeras of channelrhodopsin-1 and -2 from Chlamydomonas reinhardtii exhibit distinctive light-induced structural changes from channelrhodopsin-2. The Journal of Biological Chemistry. 290: 11623-34. PMID 25796616 DOI: 10.1074/Jbc.M115.642256 |
0.672 |
|
| 2014 |
Takeda H, Hattori M, Nishizawa T, Yamashita K, Shah ST, Caffrey M, Maturana AD, Ishitani R, Nureki O. Structural basis for ion selectivity revealed by high-resolution crystal structure of Mg2+ channel MgtE. Nature Communications. 5: 5374. PMID 25367295 DOI: 10.1038/Ncomms6374 |
0.684 |
|
| 2014 |
Pescitelli G, Kato HE, Oishi S, Ito J, Maturana AD, Nureki O, Woody RW. Exciton circular dichroism in channelrhodopsin. The Journal of Physical Chemistry. B. 118: 11873-85. PMID 25247388 DOI: 10.1021/Jp505917P |
0.649 |
|
| 2014 |
Kumazaki K, Tsukazaki T, Nishizawa T, Tanaka Y, Kato HE, Nakada-Nakura Y, Hirata K, Mori Y, Suga H, Dohmae N, Ishitani R, Nureki O. Crystallization and preliminary X-ray diffraction analysis of YidC, a membrane-protein chaperone and insertase from Bacillus halodurans. Acta Crystallographica. Section F, Structural Biology Communications. 70: 1056-60. PMID 25084381 DOI: 10.1107/S2053230X14012540 |
0.642 |
|
| 2014 |
Ito S, Kato HE, Taniguchi R, Iwata T, Nureki O, Kandori H. Water-containing hydrogen-bonding network in the active center of channelrhodopsin. Journal of the American Chemical Society. 136: 3475-82. PMID 24512107 DOI: 10.1021/Ja410836G |
0.657 |
|
| 2013 |
Kato HE, Nureki O. Crystal structure of channelrhodopsin, a light-gated cation channel - all cations lead through the monomer. Biophysics (Nagoya-Shi, Japan). 9: 57-61. PMID 27493541 DOI: 10.2142/Biophysics.9.57 |
0.681 |
|
| 2013 |
Doki S, Kato HE, Solcan N, Iwaki M, Koyama M, Hattori M, Iwase N, Tsukazaki T, Sugita Y, Kandori H, Newstead S, Ishitani R, Nureki O. Structural basis for dynamic mechanism of proton-coupled symport by the peptide transporter POT. Proceedings of the National Academy of Sciences of the United States of America. 110: 11343-8. PMID 23798427 DOI: 10.2142/Biophys.54.085 |
0.768 |
|
| 2013 |
Tanaka Y, Hipolito CJ, Maturana AD, Ito K, Kuroda T, Higuchi T, Katoh T, Kato HE, Hattori M, Kumazaki K, Tsukazaki T, Ishitani R, Suga H, Nureki O. Structural basis for the drug extrusion mechanism by a MATE multidrug transporter. Nature. 496: 247-51. PMID 23535598 DOI: 10.1038/Nature12014 |
0.772 |
|
| 2013 |
Nozawa K, Ishitani R, Yoshihisa T, Sato M, Arisaka F, Kanamaru S, Dohmae N, Mangroo D, Senger B, Becker HD, Nureki O. Crystal structure of Cex1p reveals the mechanism of tRNA trafficking between nucleus and cytoplasm. Nucleic Acids Research. 41: 3901-14. PMID 23396276 DOI: 10.1093/nar/gkt010 |
0.774 |
|
| 2013 |
Maruyama T, Imai S, Osawa M, Hattori M, Ishitani R, Nureki O, Shimada I. Backbone resonance assignments for the cytoplasmic region of the Mg(2+) transporter MgtE in the Mg (2+)-unbound state. Biomolecular Nmr Assignments. 7: 93-6. PMID 22477092 DOI: 10.1007/s12104-012-9385-y |
0.635 |
|
| 2012 |
Kawahara-Kobayashi A, Masuda A, Araiso Y, Sakai Y, Kohda A, Uchiyama M, Asami S, Matsuda T, Ishitani R, Dohmae N, Yokoyama S, Kigawa T, Nureki O, Kiga D. Simplification of the genetic code: restricted diversity of genetically encoded amino acids. Nucleic Acids Research. 40: 10576-84. PMID 22909996 DOI: 10.1093/nar/gks786 |
0.324 |
|
| 2012 |
Imai S, Maruyama T, Osawa M, Hattori M, Ishitani R, Nureki O, Shimada I. Spatial distribution of cytoplasmic domains of the Mg(2+)-transporter MgtE, in a solution lacking Mg(2+), revealed by paramagnetic relaxation enhancement. Biochimica Et Biophysica Acta. 1824: 1129-35. PMID 22743077 DOI: 10.1016/j.bbapap.2012.06.008 |
0.659 |
|
| 2012 |
Kato HE, Zhang F, Yizhar O, Ramakrishnan C, Nishizawa T, Hirata K, Ito J, Aita Y, Tsukazaki T, Hayashi S, Hegemann P, Maturana AD, Ishitani R, Deisseroth K, Nureki O. Crystal structure of the channelrhodopsin light-gated cation channel. Nature. 482: 369-74. PMID 22266941 DOI: 10.1038/Nature10870 |
0.692 |
|
| 2012 |
Katayama H, Nozawa K, Nureki O, Nakahara Y, Hojo H. Pyrrolysine analogs as substrates for bacterial pyrrolysyl-tRNA synthetase in vitro and in vivo. Bioscience, Biotechnology, and Biochemistry. 76: 205-8. PMID 22232266 DOI: 10.1271/bbb.110653 |
0.745 |
|
| 2010 |
Nozawa K, Ishitani R, Nureki O. [Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality]. Seikagaku. the Journal of Japanese Biochemical Society. 82: 617-23. PMID 20715574 |
0.745 |
|
| 2009 |
Hattori M, Iwase N, Furuya N, Tanaka Y, Tsukazaki T, Ishitani R, Maguire ME, Ito K, Maturana A, Nureki O. Mg(2+)-dependent gating of bacterial MgtE channel underlies Mg(2+) homeostasis. The Embo Journal. 28: 3602-12. PMID 19798051 DOI: 10.1038/emboj.2009.288 |
0.647 |
|
| 2009 |
Hattori M, Jin Y, Nishimasu H, Tanaka Y, Mochizuki M, Uchiumi T, Ishitani R, Ito K, Nureki O. Structural basis of novel interactions between the small-GTPase and GDI-like domains in prokaryotic FeoB iron transporter. Structure (London, England : 1993). 17: 1345-55. PMID 19733088 DOI: 10.1016/j.str.2009.08.007 |
0.626 |
|
| 2009 |
Jin Y, Hattori M, Nisimasu H, Ishitani R, Nureki O. Crystallization and preliminary X-ray diffraction analysis of the truncated cytosolic domain of the iron transporter FeoB. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 65: 784-7. PMID 19652339 DOI: 10.1107/S1744309109024464 |
0.626 |
|
| 2009 |
Higuchi T, Hattori M, Tanaka Y, Ishitani R, Nureki O. Crystal structure of the cytosolic domain of the cation diffusion facilitator family protein. Proteins. 76: 768-71. PMID 19422055 DOI: 10.1002/prot.22444 |
0.626 |
|
| 2009 |
Nozawa K, O'Donoghue P, Gundllapalli S, Araiso Y, Ishitani R, Umehara T, Söll D, Nureki O. Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality. Nature. 457: 1163-7. PMID 19118381 DOI: 10.1038/Nature07611 |
0.759 |
|
| 2009 |
Nureki O, Hattori M, Ishitani R. [Mechanism of cellular magnesium balance regulation by a magnesium transporter]. Seikagaku. the Journal of Japanese Biochemical Society. 80: 933-9. PMID 19039979 |
0.626 |
|
| 2008 |
Ishitani R, Sugita Y, Dohmae N, Furuya N, Hattori M, Nureki O. Mg2+-sensing mechanism of Mg2+ transporter MgtE probed by molecular dynamics study. Proceedings of the National Academy of Sciences of the United States of America. 105: 15393-8. PMID 18832160 DOI: 10.1073/pnas.0802991105 |
0.64 |
|
| 2008 |
Ishitani R, Yokoyama S, Nureki O. Structure, dynamics, and function of RNA modification enzymes. Current Opinion in Structural Biology. 18: 330-9. PMID 18539024 DOI: 10.1016/j.sbi.2008.05.003 |
0.353 |
|
| 2008 |
Hattori M, Nureki O. [Structural basis for the mechanism of Mg2 homeostasis by MgtE transporter]. Tanpakushitsu Kakusan Koso. Protein, Nucleic Acid, Enzyme. 53: 242-8. PMID 18326297 |
0.626 |
|
| 2007 |
Hattori M, Tanaka Y, Ishitani R, Nureki O. Crystallization and preliminary X-ray diffraction analysis of the cytosolic domain of a cation diffusion facilitator family protein. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 63: 771-3. PMID 17768351 DOI: 10.1107/S1744309107038948 |
0.626 |
|
| 2007 |
Hattori M, Tanaka Y, Fukai S, Ishitani R, Nureki O. Crystal structure of the MgtE Mg2+ transporter. Nature. 448: 1072-5. PMID 17700703 DOI: 10.1038/nature06093 |
0.626 |
|
| 2007 |
Hattori M, Tanaka Y, Fukai S, Ishitani R, Nureki O. Crystallization and preliminary X-ray diffraction analysis of the full-length Mg2+ transporter MgtE. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 63: 682-4. PMID 17671367 DOI: 10.1107/S1744309107032332 |
0.626 |
|
| 2007 |
Tanaka Y, Hattori M, Fukai S, Ishitania R, Nureki O. Crystallization and preliminary X-ray diffraction analysis of the cytosolic domain of the Mg2+ transporter MgtE. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 63: 678-81. PMID 17671366 DOI: 10.1107/S1744309107032344 |
0.626 |
|
| 2006 |
Yanagisawa T, Ishii R, Fukunaga R, Nureki O, Yokoyama S. Crystallization and preliminary X-ray crystallographic analysis of the catalytic domain of pyrrolysyl-tRNA synthetase from the methanogenic archaeon Methanosarcina mazei. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 62: 1031-3. PMID 17012805 DOI: 10.1107/S1744309106036700 |
0.392 |
|
| 2006 |
Sengoku T, Nureki O, Nakamura A, Kobayashi S, Yokoyama S. Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa. Cell. 125: 287-300. PMID 16630817 DOI: 10.1016/j.cell.2006.01.054 |
0.386 |
|
| 2005 |
Fukunaga R, Ishitani R, Nureki O, Yokoyama S. Crystallization of leucyl-tRNA synthetase complexed with tRNALeu from the archaeon Pyrococcus horikoshii. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 61: 30-2. PMID 16508082 DOI: 10.1107/S1744309104021827 |
0.374 |
|
| 2005 |
Watanabe K, Nureki O, Fukai S, Ishii R, Okamoto H, Yokoyama S, Endo Y, Hori H. Roles of conserved amino acid sequence motifs in the SpoU (TrmH) RNA methyltransferase family. The Journal of Biological Chemistry. 280: 10368-77. PMID 15637073 DOI: 10.1074/jbc.M411209200 |
0.404 |
|
| 2004 |
Katsura Y, Shirouzu M, Yamaguchi H, Ishitani R, Nureki O, Kuramitsu S, Hayashi H, Yokoyama S. Crystal structure of a putative aspartate aminotransferase belonging to subgroup IV. Proteins. 55: 487-92. PMID 15103612 DOI: 10.1002/prot.20020 |
0.353 |
|
| 2004 |
Nureki O, Watanabe K, Fukai S, Ishii R, Endo Y, Hori H, Yokoyama S. Deep knot structure for construction of active site and cofactor binding site of tRNA modification enzyme. Structure (London, England : 1993). 12: 593-602. PMID 15062082 DOI: 10.1016/j.str.2004.03.003 |
0.418 |
|
| 2004 |
Ito N, Nureki O, Shirouzu M, Yokoyama S, Hanaoka F. Crystal structure of the Pyrococcus horikoshii DNA primase-UTP complex: implications for the mechanism of primer synthesis. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 8: 913-23. PMID 14750947 DOI: 10.1111/j.1365-2443.2003.00693.x |
0.353 |
|
| 2004 |
Sengoku T, Nureki O, Dohmae N, Nakamura A, Yokoyama S. Crystallization and preliminary X-ray analysis of the helicase domains of Vasa complexed with RNA and an ATP analogue. Acta Crystallographica. Section D, Biological Crystallography. 60: 320-2. PMID 14747711 DOI: 10.1107/S0907444903025897 |
0.376 |
|
| 2004 |
Kise Y, Lee SW, Park SG, Fukai S, Sengoku T, Ishii R, Yokoyama S, Kim S, Nureki O. A short peptide insertion crucial for angiostatic activity of human tryptophanyl-tRNA synthetase. Nature Structural & Molecular Biology. 11: 149-56. PMID 14730354 DOI: 10.1038/nsmb722 |
0.391 |
|
| 2004 |
Fujikawa N, Kurumizaka H, Nureki O, Tanaka Y, Yamazoe M, Hiraga S, Yokoyama S. Structural and biochemical analyses of hemimethylated DNA binding by the SeqA protein. Nucleic Acids Research. 32: 82-92. PMID 14704346 DOI: 10.1093/nar/gkh173 |
0.378 |
|
| 2004 |
Fukunaga R, Fukai S, Ishitani R, Nureki O, Yokoyama S. Crystal structures of the CP1 domain from Thermus thermophilus isoleucyl-tRNA synthetase and its complex with L-valine. The Journal of Biological Chemistry. 279: 8396-402. PMID 14672940 DOI: 10.1074/Jbc.M312830200 |
0.385 |
|
| 2003 |
Okabe M, Tomita K, Ishitani R, Ishii R, Takeuchi N, Arisaka F, Nureki O, Yokoyama S. Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure. The Embo Journal. 22: 5918-27. PMID 14592988 DOI: 10.1093/Emboj/Cdg563 |
0.367 |
|
| 2003 |
Polycarpo C, Ambrogelly A, Ruan B, Tumbula-Hansen D, Ataide SF, Ishitani R, Yokoyama S, Nureki O, Ibba M, Söll D. Activation of the pyrrolysine suppressor tRNA requires formation of a ternary complex with class I and class II lysyl-tRNA synthetases. Molecular Cell. 12: 287-94. PMID 14536069 DOI: 10.1016/S1097-2765(03)00280-6 |
0.356 |
|
| 2003 |
Tawaramoto MS, Park SY, Tanaka Y, Nureki O, Kurumizaka H, Yokoyama S. Crystal structure of the human centromere protein B (CENP-B) dimerization domain at 1.65-A resolution. The Journal of Biological Chemistry. 278: 51454-61. PMID 14522975 DOI: 10.1074/jbc.M310388200 |
0.353 |
|
| 2003 |
Kigawa T, Yamaguchi-Nunokawa E, Kodama K, Matsuda T, Yabuki T, Matsuda N, Ishitani R, Nureki O, Yokoyama S. Selenomethionine incorporation into a protein by cell-free synthesis. Journal of Structural and Functional Genomics. 2: 29-35. PMID 12836672 DOI: 10.1023/a:1013203532303 |
0.353 |
|
| 2003 |
Kobayashi T, Nureki O, Ishitani R, Yaremchuk A, Tukalo M, Cusack S, Sakamoto K, Yokoyama S. Structural basis for orthogonal tRNA specificities of tyrosyl-tRNA synthetases for genetic code expansion. Nature Structural Biology. 10: 425-32. PMID 12754495 DOI: 10.2142/Biophys.43.S94_1 |
0.395 |
|
| 2003 |
Ishii R, Nureki O, Yokoyama S. Crystal structure of the tRNA processing enzyme RNase PH from Aquifex aeolicus. The Journal of Biological Chemistry. 278: 32397-404. PMID 12746447 DOI: 10.1074/jbc.M300639200 |
0.353 |
|
| 2003 |
Ishitani R, Nureki O, Nameki N, Okada N, Nishimura S, Yokoyama S. Alternative tertiary structure of tRNA for recognition by a posttranscriptional modification enzyme. Cell. 113: 383-94. PMID 12732145 DOI: 10.1016/s0092-8674(03)00280-0 |
0.397 |
|
| 2003 |
Fujikawa N, Kurumizaka H, Nureki O, Terada T, Shirouzu M, Katayama T, Yokoyama S. Structural basis of replication origin recognition by the DnaA protein. Nucleic Acids Research. 31: 2077-86. PMID 12682358 DOI: 10.1093/nar/gkg309 |
0.394 |
|
| 2003 |
Fukai S, Nureki O, Sekine S, Shimada A, Vassylyev DG, Yokoyama S. Mechanism of molecular interactions for tRNA(Val) recognition by valyl-tRNA synthetase. Rna (New York, N.Y.). 9: 100-11. PMID 12554880 DOI: 10.1261/rna.2760703 |
0.353 |
|
| 2003 |
Sekine S, Nureki O, Dubois DY, Bernier S, Chênevert R, Lapointe J, Vassylyev DG, Yokoyama S. ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding. The Embo Journal. 22: 676-88. PMID 12554668 DOI: 10.1093/Emboj/Cdg053 |
0.399 |
|
| 2002 |
Ogiso H, Ishitani R, Nureki O, Fukai S, Yamanaka M, Kim JH, Saito K, Sakamoto A, Inoue M, Shirouzu M, Yokoyama S. Crystal structure of the complex of human epidermal growth factor and receptor extracellular domains. Cell. 110: 775-87. PMID 12297050 DOI: 10.1016/S0092-8674(02)00963-7 |
0.38 |
|
| 2002 |
Kagawa W, Kurumizaka H, Ishitani R, Fukai S, Nureki O, Shibata T, Yokoyama S. Crystal structure of the homologous-pairing domain from the human Rad52 recombinase in the undecameric form. Molecular Cell. 10: 359-71. PMID 12191481 DOI: 10.1016/s1097-2765(02)00587-7 |
0.353 |
|
| 2002 |
Nureki O, Shirouzu M, Hashimoto K, Ishitani R, Terada T, Tamakoshi M, Oshima T, Chijimatsu M, Takio K, Vassylyev DG, Shibata T, Inoue Y, Kuramitsu S, Yokoyama S. An enzyme with a deep trefoil knot for the active-site architecture. Acta Crystallographica. Section D, Biological Crystallography. 58: 1129-37. PMID 12077432 DOI: 10.1107/s0907444902006601 |
0.353 |
|
| 2002 |
Ishitani R, Nureki O, Fukai S, Kijimoto T, Nameki N, Watanabe M, Kondo H, Sekine M, Okada N, Nishimura S, Yokoyama S. Crystal structure of archaeosine tRNA-guanine transglycosylase. Journal of Molecular Biology. 318: 665-77. PMID 12054814 DOI: 10.1016/S0022-2836(02)00090-6 |
0.436 |
|
| 2002 |
Terada T, Nureki O, Ishitani R, Ambrogelly A, Ibba M, Söll D, Yokoyama S. Functional convergence of two lysyl-tRNA synthetases with unrelated topologies. Nature Structural Biology. 9: 257-62. PMID 11887185 DOI: 10.1038/Nsb777 |
0.392 |
|
| 2002 |
Hendrickson TL, Nomanbhoy TK, De Crécy-Lagard V, Fukai S, Nureki O, Yokoyama S, Schimmel P. Mutational separation of two pathways for editing by a class I tRNA synthetase Molecular Cell. 9: 353-362. PMID 11864608 DOI: 10.1016/S1097-2765(02)00449-5 |
0.372 |
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