| Year |
Citation |
Score |
| 2023 |
Gao M, Lu Y, Geng F, Klose C, Staudt AM, Huang H, Nguyen D, Lan H, Lu H, Mockler TC, Nusinow DA, Hiltbrunner A, Schäfer E, Wigge PA, Jaeger KE. Phytochromes transmit photoperiod information via the evening complex in Brachypodium. Genome Biology. 24: 256. PMID 37936225 DOI: 10.1186/s13059-023-03082-w |
0.315 |
|
| 2023 |
Sreedasyam A, Plott C, Hossain MS, Lovell JT, Grimwood J, Jenkins JW, Daum C, Barry K, Carlson J, Shu S, Phillips J, Amirebrahimi M, Zane M, Wang M, Goodstein D, ... ... Mockler TC, et al. JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom. Nucleic Acids Research. PMID 37526283 DOI: 10.1093/nar/gkad616 |
0.333 |
|
| 2023 |
Ludwig E, Sumner J, Berry J, Polydore S, Ficor T, Agnew E, Haines K, Greenham K, Fahlgren N, Mockler TC, Gehan MA. Natural variation in Brachypodium distachyon responses to combined abiotic stresses. The Plant Journal : For Cell and Molecular Biology. PMID 37483133 DOI: 10.1111/tpj.16387 |
0.703 |
|
| 2020 |
Michael TP, Ernst E, Hartwick N, Chu P, Bryant D, Gilbert S, Ortleb S, Baggs EL, Sree KS, Appenroth KJ, Fuchs J, Jupe F, Sandoval JP, Krasileva KV, Borisjuk L, ... Mockler TC, et al. Genome and time-of-day transcriptome of link morphological minimization with gene loss and less growth control. Genome Research. PMID 33361111 DOI: 10.1101/gr.266429.120 |
0.394 |
|
| 2020 |
Greenham K, Sartor RC, Zorich S, Lou P, Mockler TC, McClung CR. Expansion of the circadian transcriptome in and genome-wide diversification of paralog expression patterns. Elife. 9. PMID 32996462 DOI: 10.7554/eLife.58993 |
0.347 |
|
| 2020 |
VanBuren R, Man Wai C, Wang X, Pardo J, Yocca AE, Wang H, Chaluvadi SR, Han G, Bryant D, Edger PP, Messing J, Sorrells ME, Mockler TC, Bennetzen JL, Michael TP. Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff. Nature Communications. 11: 884. PMID 32060277 DOI: 10.1038/S41467-020-14724-Z |
0.349 |
|
| 2019 |
Wai CM, Weise SE, Ozersky P, Mockler TC, Michael TP, VanBuren R. Time of day and network reprogramming during drought induced CAM photosynthesis in Sedum album. Plos Genetics. 15: e1008209. PMID 31199791 DOI: 10.1371/Journal.Pgen.1008209 |
0.41 |
|
| 2019 |
Sagan V, Maimaitijiang M, Sidike P, Eblimit K, Peterson K, Hartling S, Esposito F, Khanal K, Newcomb M, Pauli D, Ward R, Fritschi F, Shakoor N, Mockler T. UAV-Based High Resolution Thermal Imaging for Vegetation Monitoring, and Plant Phenotyping Using ICI 8640 P, FLIR Vue Pro R 640, and thermoMap Cameras Remote Sensing. 11: 330. DOI: 10.3390/Rs11030330 |
0.338 |
|
| 2018 |
VanBuren R, Wai CM, Colle M, Wang J, Sullivan S, Bushakra JM, Liachko I, Vining KJ, Dossett M, Finn CE, Jibran R, Chagné D, Childs K, Edger PP, Mockler TC, et al. A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome. Gigascience. PMID 30107523 DOI: 10.1093/Gigascience/Giy094 |
0.366 |
|
| 2018 |
Jansson C, Vogel J, Hazen S, Brutnell T, Mockler T. Climate-smart crops with enhanced photosynthesis. Journal of Experimental Botany. 69: 3801-3809. PMID 30032188 DOI: 10.1093/Jxb/Ery213 |
0.315 |
|
| 2018 |
VanBuren R, Wai CM, Ou S, Pardo J, Bryant D, Jiang N, Mockler TC, Edger P, Michael TP. Extreme haplotype variation in the desiccation-tolerant clubmoss Selaginella lepidophylla. Nature Communications. 9: 13. PMID 29296019 DOI: 10.1038/S41467-017-02546-5 |
0.415 |
|
| 2018 |
Li H, Yin Z, Manley P, Burken JG, Shakoor N, Fahlgren N, Mockler T. Early Drought Plant Stress Detection with Bi-Directional Long-Term Memory Networks Photogrammetric Engineering and Remote Sensing. 84: 459-468. DOI: 10.14358/Pers.84.7.459 |
0.309 |
|
| 2017 |
Huang H, Gehan MA, Huss SE, Alvarez S, Lizarraga C, Gruebbling EL, Gierer J, Naldrett MJ, Bindbeutel RK, Evans BS, Mockler TC, Nusinow DA. Cross-species complementation reveals conserved functions for EARLY FLOWERING 3 between monocots and dicots. Plant Direct. 1: e00018. PMID 31245666 DOI: 10.1002/pld3.18 |
0.761 |
|
| 2017 |
Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, ... ... Mockler T, et al. Guidelines for Genome-Scale Analysis of Biological Rhythms. Journal of Biological Rhythms. 748730417728663. PMID 29098954 DOI: 10.1177/0748730417728663 |
0.318 |
|
| 2017 |
Begemann MB, Gray BN, January E, Gordon GC, He Y, Liu H, Wu X, Brutnell TP, Mockler TC, Oufattole M. Precise insertion and guided editing of higher plant genomes using Cpf1 CRISPR nucleases. Scientific Reports. 7: 11606. PMID 28912524 DOI: 10.1038/S41598-017-11760-6 |
0.373 |
|
| 2017 |
Greenham K, Guadagno CR, Gehan MA, Mockler TC, Weinig C, Ewers BE, McClung CR. Temporal network analysis identifies early physiological and transcriptomic indicators of mild drought in Brassica rapa. Elife. 6. PMID 28826479 DOI: 10.7554/Elife.29655 |
0.761 |
|
| 2017 |
VanBuren R, Wai J, Zhang Q, Song X, Edger PP, Bryant D, Michael TP, Mockler TC, Bartels D. Seed desiccation mechanisms co-opted for vegetative desiccation in the resurrection grass Oropetium thomeaum. Plant, Cell & Environment. PMID 28730594 DOI: 10.1111/Pce.13027 |
0.445 |
|
| 2017 |
Wai CM, VanBuren R, Zhang J, Huang L, Miao W, Edger PP, Yim WC, Priest HD, Meyers BC, Mockler T, Smith JAC, Cushman JC, Ming R. Temporal and spatial transcriptomic and microRNA dynamics of CAM photosynthesis in pineapple. The Plant Journal : For Cell and Molecular Biology. PMID 28670834 DOI: 10.1111/Tpj.13630 |
0.444 |
|
| 2017 |
Boyle G, Richter K, Priest HD, Traver D, Mockler TC, Chang JT, Kay SA, Breton G. Comparative Analysis of Vertebrate Diurnal/Circadian Transcriptomes. Plos One. 12: e0169923. PMID 28076377 DOI: 10.1371/Journal.Pone.0169923 |
0.429 |
|
| 2017 |
Greenham K, Guadagno CR, Gehan MA, Mockler TC, Weinig C, Ewers BE, McClung CR. Author response: Temporal network analysis identifies early physiological and transcriptomic indicators of mild drought in Brassica rapa Elife. DOI: 10.7554/Elife.29655.026 |
0.721 |
|
| 2016 |
Michael TP, Bryant D, Gutierrez R, Borisjuk N, Chu P, Zhang H, Xia J, Zhou J, Peng H, El Baidouri M, Ten Hallers B, Hastie AR, Liang T, Acosta K, Gilbert S, ... ... Mockler TC, et al. Comprehensive Definition of Genome Features in Spirodela polyrhiza by High-Depth Physical Mapping and Short-Read DNA Sequencing Strategies. The Plant Journal : For Cell and Molecular Biology. PMID 27754575 DOI: 10.1111/Tpj.13400 |
0.359 |
|
| 2016 |
Sebastian J, Yee MC, Goudinho Viana W, Rellán-Álvarez R, Feldman M, Priest HD, Trontin C, Lee T, Jiang H, Baxter I, Mockler TC, Hochholdinger F, Brutnell TP, Dinneny JR. Grasses suppress shoot-borne roots to conserve water during drought. Proceedings of the National Academy of Sciences of the United States of America. PMID 27422554 DOI: 10.1073/Pnas.1604021113 |
0.328 |
|
| 2016 |
VanBuren R, Bryant D, Bushakra JM, Vining KJ, Edger PP, Rowley ER, Priest HD, Michael TP, Lyons E, Filichkin SA, Dossett M, Finn CE, Bassil NV, Mockler TC. The genome of black raspberry (Rubus occidentalis). The Plant Journal : For Cell and Molecular Biology. PMID 27228578 DOI: 10.1111/Tpj.13215 |
0.418 |
|
| 2016 |
Rhee SY, Parker JE, Mockler TC. A glimpse into the future of genome-enabled plant biology from the shores of Cold Spring Harbor. Genome Biology. 17: 3. PMID 26754022 DOI: 10.1186/S13059-016-0870-Y |
0.406 |
|
| 2015 |
Howe GT, Horvath DP, Dharmawardhana P, Priest HD, Mockler TC, Strauss SH. Extensive Transcriptome Changes During Natural Onset and Release of Vegetative Bud Dormancy in Populus. Frontiers in Plant Science. 6: 989. PMID 26734012 DOI: 10.3389/Fpls.2015.00989 |
0.428 |
|
| 2015 |
VanBuren R, Bryant D, Edger PP, Tang H, Burgess D, Challabathula D, Spittle K, Hall R, Gu J, Lyons E, Freeling M, Bartels D, Ten Hallers B, Hastie A, Michael TP, ... Mockler TC, et al. Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum. Nature. 527: 508-11. PMID 26560029 DOI: 10.1038/Nature15714 |
0.328 |
|
| 2015 |
Kim DM, Zhang H, Zhou H, Du T, Wu Q, Mockler TC, Berezin MY. Highly sensitive image-derived indices of water-stressed plants using hyperspectral imaging in SWIR and histogram analysis. Scientific Reports. 5: 15919. PMID 26531782 DOI: 10.1038/Srep15919 |
0.335 |
|
| 2015 |
Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, ... ... Mockler T, et al. The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics. 47: 1435-42. PMID 26523774 DOI: 10.1038/Ng.3435 |
0.431 |
|
| 2015 |
Fahlgren N, Feldman M, Gehan MA, Wilson MS, Shyu C, Bryant DW, Hill ST, McEntee CJ, Warnasooriya SN, Kumar I, Ficor T, Turnipseed S, Gilbert KB, Brutnell TP, Carrington JC, ... Mockler TC, et al. A versatile phenotyping system and analytics platform reveals diverse temporal responses to water availability in Setaria. Molecular Plant. PMID 26099924 DOI: 10.1016/J.Molp.2015.06.005 |
0.735 |
|
| 2015 |
Filichkin S, Priest HD, Megraw M, Mockler TC. Alternative splicing in plants: directing traffic at the crossroads of adaptation and environmental stress. Current Opinion in Plant Biology. 24: 125-35. PMID 25835141 DOI: 10.1016/J.Pbi.2015.02.008 |
0.428 |
|
| 2015 |
Carbonell A, Fahlgren N, Mitchell S, Cox KL, Reilly KC, Mockler TC, Carrington JC. Highly specific gene silencing in a monocot species by artificial microRNAs derived from chimeric miRNA precursors. The Plant Journal : For Cell and Molecular Biology. 82: 1061-1075. PMID 25809382 DOI: 10.1111/Tpj.12835 |
0.413 |
|
| 2015 |
Filichkin SA, Cumbie JS, Dharmawardhana P, Jaiswal P, Chang JH, Palusa SG, Reddy AS, Megraw M, Mockler TC. Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts in Arabidopsis. Molecular Plant. 8: 207-27. PMID 25680774 DOI: 10.1016/J.Molp.2014.10.011 |
0.351 |
|
| 2015 |
Gehan MA, Greenham K, Mockler TC, McClung CR. Transcriptional networks-crops, clocks, and abiotic stress. Current Opinion in Plant Biology. 24: 39-46. PMID 25646668 DOI: 10.1016/J.Pbi.2015.01.004 |
0.737 |
|
| 2015 |
Vragović K, Selaa A, Friedlander-Shani L, Fridman Y, Hacham Y, Holland N, Bartom E, Mockler TC, Savaldi-Goldstein S. Translatome analyses capture of opposing tissuespecific brassinosteroid signals orchestrating root meristem differentiation Proceedings of the National Academy of Sciences of the United States of America. 112: 923-928. PMID 25561530 DOI: 10.1073/Pnas.1417947112 |
0.768 |
|
| 2014 |
Wang L, Czedik-Eysenberg A, Mertz RA, Si Y, Tohge T, Nunes-Nesi A, Arrivault S, Dedow LK, Bryant DW, Zhou W, Xu J, Weissmann S, Studer A, Li P, Zhang C, ... ... Mockler TC, et al. Comparative analyses of C₄ and C₃ photosynthesis in developing leaves of maize and rice. Nature Biotechnology. 32: 1158-65. PMID 25306245 DOI: 10.1038/Nbt.3019 |
0.413 |
|
| 2014 |
Jung HS, Mockler TC. A new alternative in plant retrograde signaling. Genome Biology. 15: 117. PMID 25001637 DOI: 10.1186/Gb4178 |
0.412 |
|
| 2014 |
Gordon SP, Priest H, Des Marais DL, Schackwitz W, Figueroa M, Martin J, Bragg JN, Tyler L, Lee CR, Bryant D, Wang W, Messing J, Manzaneda AJ, Barry K, Garvin DF, ... ... Mockler TC, et al. Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines. The Plant Journal : For Cell and Molecular Biology. 79: 361-74. PMID 24888695 DOI: 10.1111/Tpj.12569 |
0.375 |
|
| 2014 |
Wang W, Haberer G, Gundlach H, Gläßer C, Nussbaumer T, Luo MC, Lomsadze A, Borodovsky M, Kerstetter RA, Shanklin J, Byrant DW, Mockler TC, Appenroth KJ, Grimwood J, Jenkins J, et al. The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle. Nature Communications. 5: 3311. PMID 24548928 DOI: 10.1038/Ncomms4311 |
0.39 |
|
| 2014 |
Priest HD, Fox SE, Rowley ER, Murray JR, Michael TP, Mockler TC. Analysis of global gene expression in Brachypodium distachyon reveals extensive network plasticity in response to abiotic stress. Plos One. 9: e87499. PMID 24489928 DOI: 10.1371/Journal.Pone.0087499 |
0.415 |
|
| 2014 |
Fox SE, Christie MR, Marine M, Priest HD, Mockler TC, Blouin MS. Sequencing and characterization of the anadromous steelhead (Oncorhynchus mykiss) transcriptome. Marine Genomics. 15: 13-5. PMID 24440488 DOI: 10.1016/J.Margen.2013.12.001 |
0.332 |
|
| 2013 |
Jung HS, Crisp PA, Estavillo GM, Cole B, Hong F, Mockler TC, Pogson BJ, Chory J. Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light. Proceedings of the National Academy of Sciences of the United States of America. 110: 14474-9. PMID 23918368 DOI: 10.1073/Pnas.1311632110 |
0.744 |
|
| 2013 |
Trabucco GM, Matos DA, Lee SJ, Saathoff AJ, Priest HD, Mockler TC, Sarath G, Hazen SP. Functional characterization of cinnamyl alcohol dehydrogenase and caffeic acid O-methyltransferase in Brachypodium distachyon. Bmc Biotechnology. 13: 61. PMID 23902793 DOI: 10.1186/1472-6750-13-61 |
0.305 |
|
| 2013 |
Vining K, Pomraning KR, Wilhelm LJ, Ma C, Pellegrini M, Di Y, Mockler TC, Freitag M, Strauss SH. Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa. Bmc Plant Biology. 13: 92. PMID 23799904 DOI: 10.1186/1471-2229-13-92 |
0.396 |
|
| 2013 |
Ibarra-Laclette E, Lyons E, Hernández-Guzmán G, Pérez-Torres CA, Carretero-Paulet L, Chang TH, Lan T, Welch AJ, Juárez MJ, Simpson J, Fernández-Cortés A, Arteaga-Vázquez M, Góngora-Castillo E, Acevedo-Hernández G, Schuster SC, ... ... Mockler T, et al. Architecture and evolution of a minute plant genome. Nature. 498: 94-8. PMID 23665961 DOI: 10.1038/Nature12132 |
0.377 |
|
| 2012 |
Slavov GT, DiFazio SP, Martin J, Schackwitz W, Muchero W, Rodgers-Melnick E, Lipphardt MF, Pennacchio CP, Hellsten U, Pennacchio LA, Gunter LE, Ranjan P, Vining K, Pomraning KR, Wilhelm LJ, ... ... Mockler TC, et al. Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa. The New Phytologist. 196: 713-25. PMID 22861491 DOI: 10.1111/J.1469-8137.2012.04258.X |
0.318 |
|
| 2012 |
Pandelova I, Figueroa M, Wilhelm LJ, Manning VA, Mankaney AN, Mockler TC, Ciuffetti LM. Host-selective toxins of Pyrenophora tritici-repentis induce common responses associated with host susceptibility. Plos One. 7: e40240. PMID 22792250 DOI: 10.1371/Journal.Pone.0040240 |
0.329 |
|
| 2012 |
Filichkin SA, Mockler TC. Unproductive alternative splicing and nonsense mRNAs: a widespread phenomenon among plant circadian clock genes. Biology Direct. 7: 20. PMID 22747664 DOI: 10.1186/1745-6150-7-20 |
0.354 |
|
| 2012 |
Li C, Rudi H, Stockinger EJ, Cheng H, Cao M, Fox SE, Mockler TC, Westereng B, Fjellheim S, Rognli OA, Sandve SR. Comparative analyses reveal potential uses of Brachypodium distachyon as a model for cold stress responses in temperate grasses. Bmc Plant Biology. 12: 65. PMID 22569006 DOI: 10.1186/1471-2229-12-65 |
0.364 |
|
| 2012 |
Wang Y, Zeng X, Iyer NJ, Bryant DW, Mockler TC, Mahalingam R. Exploring the switchgrass transcriptome using second-generation sequencing technology. Plos One. 7: e34225. PMID 22479570 DOI: 10.1371/Journal.Pone.0034225 |
0.342 |
|
| 2012 |
Vining KJ, Pomraning KR, Wilhelm LJ, Priest HD, Pellegrini M, Mockler TC, Freitag M, Strauss SH. Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression. Bmc Genomics. 13: 27. PMID 22251412 DOI: 10.1186/1471-2164-13-27 |
0.328 |
|
| 2012 |
Rowley ER, Fox SE, Bryant DW, Sullivan CM, Priest HD, Givan SA, Mehlenbacher SA, Mockler TC. Assembly and characterization of the European hazelnut 'Jefferson' transcriptome Crop Science. 52: 2679-2686. DOI: 10.2135/Cropsci2012.02.0065 |
0.331 |
|
| 2012 |
Pandelova I, Figueroa M, Wilhelm LJ, Manning VA, Mankaney AN, Mockler TC, Ciuffetti LM. ToxB- and ToxA-induced regulation of ribosomal subunit genes. Plos One. DOI: 10.1371/Journal.Pone.0040240.G010 |
0.346 |
|
| 2011 |
Atwood A, DeConde R, Wang SS, Mockler TC, Sabir JS, Ideker T, Kay SA. Cell-autonomous circadian clock of hepatocytes drives rhythms in transcription and polyamine synthesis. Proceedings of the National Academy of Sciences of the United States of America. 108: 18560-5. PMID 22042857 DOI: 10.1073/Pnas.1115753108 |
0.37 |
|
| 2011 |
Cumbie JS, Kimbrel JA, Di Y, Schafer DW, Wilhelm LJ, Fox SE, Sullivan CM, Curzon AD, Carrington JC, Mockler TC, Chang JH. GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences. Plos One. 6: e25279. PMID 21998647 DOI: 10.1371/Journal.Pone.0025279 |
0.372 |
|
| 2011 |
Castoe TA, Fox SE, Jason de Koning A, Poole AW, Daza JM, Smith EN, Mockler TC, Secor SM, Pollock DD. A multi-organ transcriptome resource for the Burmese Python (Python molurus bivittatus). Bmc Research Notes. 4: 310. PMID 21867488 DOI: 10.1186/1756-0500-4-310 |
0.351 |
|
| 2011 |
Brkljacic J, Grotewold E, Scholl R, Mockler T, Garvin DF, Vain P, Brutnell T, Sibout R, Bevan M, Budak H, Caicedo AL, Gao C, Gu Y, Hazen SP, Holt BF, et al. Brachypodium as a model for the grasses: today and the future. Plant Physiology. 157: 3-13. PMID 21771916 DOI: 10.1104/Pp.111.179531 |
0.353 |
|
| 2011 |
Filichkin SA, Breton G, Priest HD, Dharmawardhana P, Jaiswal P, Fox SE, Michael TP, Chory J, Kay SA, Mockler TC. Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules. Plos One. 6: e16907. PMID 21694767 DOI: 10.1371/Journal.Pone.0016907 |
0.638 |
|
| 2011 |
Peremyslov VV, Mockler TC, Filichkin SA, Fox SE, Jaiswal P, Makarova KS, Koonin EV, Dolja VV. Expression, splicing, and evolution of the myosin gene family in plants. Plant Physiology. 155: 1191-204. PMID 21233331 DOI: 10.1104/Pp.110.170720 |
0.43 |
|
| 2011 |
Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, et al. The genome of woodland strawberry (Fragaria vesca). Nature Genetics. 43: 109-16. PMID 21186353 DOI: 10.1038/Ng.740 |
0.382 |
|
| 2010 |
Vogel JP, Garvin DF, Mockler TC, Schmutz J, Rokhsar D, Bevan MW, Barry K, Lucas S, Harmon-Smith M, Lail K, Tice H, Grimwood J, McKenzie N, Huo N, Gu YQ, et al. Genome sequencing and analysis of the model grass Brachypodium distachyon Nature. 463: 763-768. PMID 20148030 DOI: 10.1038/Nature08747 |
0.302 |
|
| 2010 |
Filichkin SA, Priest HD, Givan SA, Shen R, Bryant DW, Fox SE, Wong WK, Mockler TC. Genome-wide mapping of alternative splicing in Arabidopsis thaliana. Genome Research. 20: 45-58. PMID 19858364 DOI: 10.1101/Gr.093302.109 |
0.426 |
|
| 2009 |
Bao Y, Dharmawardhana P, Mockler TC, Strauss SH. Genome scale transcriptome analysis of shoot organogenesis in Populus. Bmc Plant Biology. 9: 132. PMID 19919717 DOI: 10.1186/1471-2229-9-132 |
0.405 |
|
| 2009 |
Ausin I, Mockler TC, Chory J, Jacobsen SE. IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana. Nature Structural & Molecular Biology. 16: 1325-7. PMID 19915591 DOI: 10.1038/Nsmb.1690 |
0.485 |
|
| 2009 |
Pandelova I, Betts MF, Manning VA, Wilhelm LJ, Mockler TC, Ciuffetti LM. Analysis of transcriptome changes induced by Ptr ToxA in wheat provides insights into the mechanisms of plant susceptibility. Molecular Plant. 2: 1067-83. PMID 19825681 DOI: 10.1093/Mp/Ssp045 |
0.417 |
|
| 2009 |
Priest HD, Filichkin SA, Mockler TC. Cis-regulatory elements in plant cell signaling. Current Opinion in Plant Biology. 12: 643-9. PMID 19717332 DOI: 10.1016/J.Pbi.2009.07.016 |
0.42 |
|
| 2009 |
Fox S, Filichkin S, Mockler TC. Applications of ultra-high-throughput sequencing. Methods in Molecular Biology (Clifton, N.J.). 553: 79-108. PMID 19588102 DOI: 10.1007/978-1-60327-563-7_5 |
0.35 |
|
| 2009 |
Bakker EG, Montgomery B, Nguyen T, Eide K, Chang J, Mockler TC, Liston A, Seabloom EW, Borer ET. Strong population structure characterizes weediness gene evolution in the invasive grass species Brachypodium distachyon. Molecular Ecology. 18: 2588-601. PMID 19457186 DOI: 10.1111/J.1365-294X.2009.04225.X |
0.363 |
|
| 2009 |
Gray J, Bevan M, Brutnell T, Buell CR, Cone K, Hake S, Jackson D, Kellogg E, Lawrence C, McCouch S, Mockler T, Moose S, Paterson A, Peterson T, Rokshar D, et al. A recommendation for naming transcription factor proteins in the grasses. Plant Physiology. 149: 4-6. PMID 19126689 DOI: 10.1104/Pp.108.128504 |
0.364 |
|
| 2008 |
Zdepski A, Wang W, Priest HD, Ali F, Alam M, Mockler TC, Michael TP. Conserved Daily Transcriptional Programs in Carica papaya. Tropical Plant Biology. 1: 236-245. PMID 20671772 DOI: 10.1007/S12042-008-9020-3 |
0.482 |
|
| 2008 |
Loudet O, Michael TP, Burger BT, Le Metté C, Mockler TC, Weigel D, Chory J. A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 105: 17193-8. PMID 18971337 DOI: 10.1073/Pnas.0807264105 |
0.755 |
|
| 2008 |
Michael TP, Breton G, Hazen SP, Priest H, Mockler TC, Kay SA, Chory J. A morning-specific phytohormone gene expression program underlying rhythmic plant growth. Plos Biology. 6: e225. PMID 18798691 DOI: 10.1371/Journal.Pbio.0060225 |
0.65 |
|
| 2008 |
Cronn R, Liston A, Parks M, Gernandt DS, Shen R, Mockler T. Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology. Nucleic Acids Research. 36: e122. PMID 18753151 DOI: 10.1093/Nar/Gkn502 |
0.305 |
|
| 2008 |
Michael TP, Mockler TC, Breton G, McEntee C, Byer A, Trout JD, Hazen SP, Shen R, Priest HD, Sullivan CM, Givan SA, Yanovsky M, Hong F, Kay SA, Chory J. Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules. Plos Genetics. 4: e14. PMID 18248097 DOI: 10.1371/Journal.Pgen.0040014 |
0.607 |
|
| 2007 |
Mockler TC, Michael TP, Priest HD, Shen R, Sullivan CM, Givan SA, McEntee C, Kay SA, Chory J. The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis. Cold Spring Harbor Symposia On Quantitative Biology. 72: 353-63. PMID 18419293 DOI: 10.1101/Sqb.2007.72.006 |
0.556 |
|
| 2007 |
Koussevitzky S, Nott A, Mockler TC, Hong F, Sachetto-Martins G, Surpin M, Lim J, Mittler R, Chory J. Signals from chloroplasts converge to regulate nuclear gene expression. Science (New York, N.Y.). 316: 715-9. PMID 17395793 DOI: 10.1126/Science. |
0.606 |
|
| 2005 |
Mockler TC, Chan S, Sundaresan A, Chen H, Jacobsen SE, Ecker JR. Applications of DNA tiling arrays for whole-genome analysis. Genomics. 85: 1-15. PMID 15607417 DOI: 10.1016/J.Ygeno.2004.10.005 |
0.337 |
|
| 2004 |
Nemhauser JL, Mockler TC, Chory J. Interdependency of brassinosteroid and auxin signaling in Arabidopsis. Plos Biology. 2: E258. PMID 15328536 DOI: 10.1371/Journal.Pbio.0020258 |
0.746 |
|
| 2004 |
Mockler TC, Yu X, Shalitin D, Parikh D, Michael TP, Liou J, Huang J, Smith Z, Alonso JM, Ecker JR, Chory J, Lin C. Regulation of flowering time in Arabidopsis by K homology domain proteins. Proceedings of the National Academy of Sciences of the United States of America. 101: 12759-64. PMID 15310842 DOI: 10.1073/Pnas.0404552101 |
0.713 |
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| 2003 |
Shalitin D, Yu X, Maymon M, Mockler T, Lin C. Blue light-dependent in vivo and in vitro phosphorylation of Arabidopsis cryptochrome 1. The Plant Cell. 15: 2421-9. PMID 14523249 DOI: 10.1105/Tpc.013011 |
0.781 |
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| 2003 |
Mockler T, Yang H, Yu X, Parikh D, Cheng YC, Dolan S, Lin C. Regulation of photoperiodic flowering by Arabidopsis photoreceptors. Proceedings of the National Academy of Sciences of the United States of America. 100: 2140-5. PMID 12578985 DOI: 10.1073/Pnas.0437826100 |
0.659 |
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| 2002 |
Shalitin D, Yang H, Mockler TC, Maymon M, Guo H, Whitelam GC, Lin C. Regulation of Arabidopsis cryptochrome 2 by blue-light-dependent phosphorylation. Nature. 417: 763-7. PMID 12066190 DOI: 10.1038/Nature00815 |
0.772 |
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| 2001 |
Guo H, Mockler T, Duong H, Lin C. SUB1, an Arabidopsis Ca2+-binding protein involved in cryptochrome and phytochrome coaction Science. 291: 487-490. PMID 11161203 DOI: 10.1126/Science.291.5503.487 |
0.71 |
|
| 1999 |
Mockler TC, Guo H, Yang H, Duong H, Lin C. Antagonistic actions of Arabidopsis cryptochromes and phytochrome B in the regulation of floral induction. Development (Cambridge, England). 126: 2073-82. PMID 10207133 |
0.644 |
|
| 1998 |
Lin C, Yang H, Guo H, Mockler T, Chen J, Cashmore AR. Enhancement of blue-light sensitivity of Arabidopsis seedlings by a blue light receptor cryptochrome 2. Proceedings of the National Academy of Sciences of the United States of America. 95: 2686-90. PMID 9482948 DOI: 10.1073/Pnas.95.5.2686 |
0.782 |
|
| 1998 |
Guo H, Yang H, Mockler TC, Lin C. Regulation of flowering time by Arabidopsis photoreceptors. Science (New York, N.Y.). 279: 1360-3. PMID 9478898 DOI: 10.1126/Science.279.5355.1360 |
0.736 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2015 |
Lee I, Mockler TC. Editorial overview: genome studies and molecular genetics: data-driven approaches to genotype-to-phenotype studies in crops. Current Opinion in Plant Biology. 24: iv-vi. PMID 25817324 DOI: 10.1016/J.Pbi.2015.03.001 |
0.287 |
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| 2018 |
Torello Marinoni D, Valentini N, Portis E, Acquadro A, Beltramo C, Mehlenbacher SA, Mockler TC, Rowley ER, Botta R. High density SNP mapping and QTL analysis for time of leaf budburst in Corylus avellana L. Plos One. 13: e0195408. PMID 29608620 DOI: 10.1371/Journal.Pone.0195408 |
0.286 |
|
| 2010 |
Bryant DW, Shen R, Priest HD, Wong WK, Mockler TC. Supersplat--spliced RNA-seq alignment. Bioinformatics (Oxford, England). 26: 1500-5. PMID 20410051 DOI: 10.1093/Bioinformatics/Btq206 |
0.284 |
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| 2012 |
Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, et al. Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. Plos One. 7: e31745. PMID 22363718 DOI: 10.1371/Journal.Pone.0031745 |
0.284 |
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| 2018 |
Bushakra JM, Dossett M, Carter KA, Vining KJ, Lee JC, Bryant DW, VanBuren R, Lee J, Mockler TC, Finn CE, Bassil NV. Characterization of aphid resistance loci in black raspberry ( Rubus occidentalis L.) Molecular Breeding. 38: 83. DOI: 10.1007/S11032-018-0839-5 |
0.283 |
|
| 2012 |
Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, Stegmeir T, Sebolt A, Gilmore B, Lawley C, Mockler TC, Bryant DW, Wilhelm L, Iezzoni A. Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry. Plos One. 7: e48305. PMID 23284615 DOI: 10.1371/Journal.Pone.0048305 |
0.277 |
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| 2020 |
Gaffney J, Tibebu R, Bart R, Beyene G, Girma D, Kane NA, Mace ES, Mockler T, Nickson TE, Taylor N, Zastrow-Hayes G. Open access to genetic sequence data maximizes value to scientists, farmers, and society Global Food Security. 26: 100411. DOI: 10.1016/J.Gfs.2020.100411 |
0.276 |
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| 2019 |
Sidike P, Sagan V, Maimaitijiang M, Maimaitiyiming M, Shakoor N, Burken J, Mockler T, Fritschi FB. dPEN: deep Progressively Expanded Network for mapping heterogeneous agricultural landscape using WorldView-3 satellite imagery Remote Sensing of Environment. 221: 756-772. DOI: 10.1016/J.Rse.2018.11.031 |
0.276 |
|
| 2015 |
Bushakra JM, Bryant DW, Dossett M, Vining KJ, VanBuren R, Gilmore BS, Lee J, Mockler TC, Finn CE, Bassil NV. A genetic linkage map of black raspberry (Rubus occidentalis) and the mapping of Ag 4 conferring resistance to the aphid Amphorophora agathonica. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 128: 1631-46. PMID 26037086 DOI: 10.1007/S00122-015-2541-X |
0.273 |
|
| 2018 |
Jibran R, Dzierzon H, Bassil N, Bushakra JM, Edger PP, Sullivan S, Finn CE, Dossett M, Vining KJ, VanBuren R, Mockler TC, Liachko I, Davies KM, Foster TM, Chagné D. Chromosome-scale scaffolding of the black raspberry (Rubus occidentalis L.) genome based on chromatin interaction data. Horticulture Research. 5: 8. PMID 29423238 DOI: 10.1038/S41438-017-0013-Y |
0.272 |
|
| 2019 |
Carter KA, Liston A, Bassil NV, Alice LA, Bushakra JM, Sutherland BL, Mockler TC, Bryant DW, Hummer KE. Target Capture Sequencing Unravels Evolution. Frontiers in Plant Science. 10: 1615. PMID 31921259 DOI: 10.3389/Fpls.2019.01615 |
0.27 |
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| 2017 |
Shakoor N, Lee S, Mockler TC. High throughput phenotyping to accelerate crop breeding and monitoring of diseases in the field. Current Opinion in Plant Biology. 38: 184-192. PMID 28738313 DOI: 10.1016/J.Pbi.2017.05.006 |
0.269 |
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| 2013 |
Ming R, VanBuren R, Liu Y, Yang M, Han Y, Li LT, Zhang Q, Kim MJ, Schatz MC, Campbell M, Li J, Bowers JE, Tang H, Lyons E, Ferguson AA, ... ... Mockler TC, et al. Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). Genome Biology. 14: R41. PMID 23663246 DOI: 10.1186/Gb-2013-14-5-R41 |
0.269 |
|
| 2020 |
Bhadra S, Sagan V, Maimaitijiang M, Maimaitiyiming M, Newcomb M, Shakoor N, Mockler TC. Quantifying Leaf Chlorophyll Concentration of Sorghum from Hyperspectral Data Using Derivative Calculus and Machine Learning Remote Sensing. 12: 2082. DOI: 10.3390/Rs12132082 |
0.266 |
|
| 2020 |
Maimaitijiang M, Sagan V, Erkbol H, Adrian J, Newcomb M, LeBauer D, Pauli D, Shakoor N, Mockler TC. Uav-Based Sorghum Growth Monitoring: A Comparative Analysis Of Lidar And Photogrammetry Isprs Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences. 489-496. DOI: 10.5194/Isprs-Annals-V-3-2020-489-2020 |
0.266 |
|
| 2012 |
Bryant DW, Priest HD, Mockler TC. Detection and quantification of alternative splicing variants using RNA-seq. Methods in Molecular Biology (Clifton, N.J.). 883: 97-110. PMID 22589127 DOI: 10.1007/978-1-61779-839-9_7 |
0.264 |
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| 2013 |
Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ. Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon. Genome Biology. 14: R145. PMID 24367943 DOI: 10.1186/Gb-2013-14-12-R145 |
0.257 |
|
| 2012 |
Verde I, Bassil N, Scalabrin S, Gilmore B, Lawley CT, Gasic K, Micheletti D, Rosyara UR, Cattonaro F, Vendramin E, Main D, Aramini V, Blas AL, Mockler TC, Bryant DW, et al. Development and evaluation of a 9K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm. Plos One. 7: e35668. PMID 22536421 DOI: 10.1371/Journal.Pone.0035668 |
0.257 |
|
| 2005 |
Mockler TC, Chan S, Sundaresan A, Chen H, Jacobsen SE, Ecker JR. Corrigendum to ‘‘Applications of DNA tiling arrays for whole-genome analysis’’ [Genomics 85 (2005) 1–15] Genomics. 85: 655. DOI: 10.1016/J.Ygeno.2005.01.004 |
0.254 |
|
| 2022 |
Shakoor N, Mockler TC. Wireless Fixed Camera Network for Greenhouse-Based Plant Phenotyping. Methods in Molecular Biology (Clifton, N.J.). 2539: 49-56. PMID 35895195 DOI: 10.1007/978-1-0716-2537-8_6 |
0.254 |
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| 2008 |
Garvin DF, Gu YQ, Hasterok R, Hazen SP, Jenkins G, Mockler TC, Mur LAJ, Vogel JP. Development of genetic and genomic research resources for Brachypodium distachyon, a new model system for grass crop research Crop Science. 48: S69-S84. DOI: 10.2135/Cropsci2007.06.0332Tpg |
0.254 |
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| 2017 |
Agnew E, Bray A, Floro E, Ellis N, Gierer J, Lizárraga C, O'Brien D, Wiechert M, Mockler TC, Shakoor N, Topp CN. Whole-Plant Manual and Image-Based Phenotyping in Controlled Environments. Current Protocols in Plant Biology. 2: 1-21. PMID 31725975 DOI: 10.1002/cppb.20044 |
0.253 |
|
| 2014 |
Priest HD, Fox SE, Rowley ER, Murray JR, Michael TP, Mockler TC. Specific GO terms uniquely enriched in a selection of network modules. Plos One. DOI: 10.1371/Journal.Pone.0087499.T002 |
0.248 |
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| 2022 |
Condorelli GE, Newcomb M, Groli EL, Maccaferri M, Forestan C, Babaeian E, Tuller M, White JW, Ward R, Mockler T, Shakoor N, Tuberosa R. Genome Wide Association Study Uncovers the QTLome for Osmotic Adjustment and Related Drought Adaptive Traits in Durum Wheat. Genes. 13. PMID 35205338 DOI: 10.3390/genes13020293 |
0.24 |
|
| 2019 |
Maimaitijiang M, Sagan V, Sidike P, Maimaitiyiming M, Hartling S, Peterson KT, Maw MJ, Shakoor N, Mockler T, Fritschi FB. Vegetation Index Weighted Canopy Volume Model (CVMVI) for soybean biomass estimation from Unmanned Aerial System-based RGB imagery Isprs Journal of Photogrammetry and Remote Sensing. 151: 27-41. DOI: 10.1016/J.Isprsjprs.2019.03.003 |
0.24 |
|
| 2016 |
Pengpumkiat S, Koesdjojo M, Rowley ER, Mockler TC, Remcho VT. Rapid Synthesis of a Long Double-Stranded Oligonucleotide from a Single-Stranded Nucleotide Using Magnetic Beads and an Oligo Library. Plos One. 11: e0149774. PMID 26930667 DOI: 10.1371/Journal.Pone.0149774 |
0.238 |
|
| 2021 |
Songsomboon K, Brenton Z, Heuser J, Kresovich S, Shakoor N, Mockler T, Cooper EA. Genomic patterns of structural variation among diverse genotypes of Sorghum bicolor and a potential role for deletions in local adaptation. G3 (Bethesda, Md.). PMID 33950177 DOI: 10.1093/g3journal/jkab154 |
0.237 |
|
| 2009 |
Bryant DW, Wong WK, Mockler TC. QSRA: a quality-value guided de novo short read assembler. Bmc Bioinformatics. 10: 69. PMID 19239711 DOI: 10.1186/1471-2105-10-69 |
0.229 |
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| 2014 |
Filichkin SA, Cumbie JS, Dharmawadhana JP, Jaiswal P, Chang JH, Palusa SG, Reddy AS, Megraw M, Mockler TC. Environmental Stresses Modulate Abundance and Timing of Alternatively Spliced Circadian Transcripts in Arabidopsis. Molecular Plant. PMID 25366180 DOI: 10.1093/mp/ssu130 |
0.228 |
|
| 2011 |
Castoe TA, Hall KT, Guibotsy Mboulas ML, Gu W, de Koning AP, Fox SE, Poole AW, Vemulapalli V, Daza JM, Mockler T, Smith EN, Feschotte C, Pollock DD. Discovery of highly divergent repeat landscapes in snake genomes using high-throughput sequencing. Genome Biology and Evolution. 3: 641-53. PMID 21572095 DOI: 10.1093/Gbe/Evr043 |
0.218 |
|
| 2012 |
Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, Stegmeir T, Sebolt A, Gilmore B, Lawley C, Mockler TC, Bryant DW, Wilhelm L, Iezzoni A. Cherry accessions used for low-coverage re-sequencing and subsequent SNP detection. Plos One. DOI: 10.1371/Journal.Pone.0048305.T001 |
0.218 |
|
| 2019 |
Shakoor N, Northrup D, Murray S, Mockler TC. Big Data Driven Agriculture: Big Data Analytics in Plant Breeding, Genomics, and the Use of Remote Sensing Technologies to Advance Crop Productivity The Plant Phenome Journal. 2: 1-8. DOI: 10.2135/TPPJ2018.12.0009 |
0.203 |
|
| 2021 |
Lozano R, Gazave E, Dos Santos JPR, Stetter MG, Valluru R, Bandillo N, Fernandes SB, Brown PJ, Shakoor N, Mockler TC, Cooper EA, Taylor Perkins M, Buckler ES, Ross-Ibarra J, Gore MA. Comparative evolutionary genetics of deleterious load in sorghum and maize. Nature Plants. 7: 17-24. PMID 33452486 DOI: 10.1038/s41477-020-00834-5 |
0.198 |
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| 2021 |
Wang Q, Shakoor N, Boyher A, Veley KM, Berry JC, Mockler TC, Bart RS. Escalation in the host-pathogen arms race: A host resistance response corresponds to a heightened bacterial virulence response. Plos Pathogens. 17: e1009175. PMID 33428681 DOI: 10.1371/journal.ppat.1009175 |
0.192 |
|
| 2020 |
Herritt MT, Pauli D, Mockler TC, Thompson AL. Chlorophyll fluorescence imaging captures photochemical efficiency of grain sorghum () in a field setting. Plant Methods. 16: 109. PMID 32793296 DOI: 10.1186/s13007-020-00650-0 |
0.187 |
|
| 2021 |
Weissmann S, Huang P, Wiechert MA, Furuyama K, Brutnell TP, Taniguchi M, Schnable JC, Mockler TC. DCT4-A New Member of the Dicarboxylate Transporter Family in C4 Grasses. Genome Biology and Evolution. 13. PMID 33587128 DOI: 10.1093/gbe/evaa251 |
0.183 |
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| 2022 |
Muleta KT, Felderhoff T, Winans N, Walstead R, Charles JR, Armstrong JS, Mamidi S, Plott C, Vogel JP, Lemaux PG, Mockler TC, Grimwood J, Schmutz J, Pressoir G, Morris GP. The recent evolutionary rescue of a staple crop depended on over half a century of global germplasm exchange. Science Advances. 8: eabj4633. PMID 35138897 DOI: 10.1126/sciadv.abj4633 |
0.168 |
|
| 2010 |
Garvin DF, McKenzie N, Vogel JP, Mockler TC, Blankenheim ZJ, Wright J, Cheema JJS, Dicks J, Huo N, Hayden DM, Gu Y, Tobias C, Chang JH, Chu A, Trick M, et al. An SSR-based genetic linkage map of the model grass Brachypodium distachyon Genome. 53: 1-13. PMID 20130744 DOI: 10.1139/G09-079 |
0.147 |
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| 2008 |
Mockler T. Measuring Gene Expression. By Matthew B Avison. New York: Tylor & Francis Group. $54.95 (paper). xi + 324 p; ill.; index. ISBN: 0-415-37472-3. 2007. The Quarterly Review of Biology. 83: 114-114. DOI: 10.1086/586945 |
0.113 |
|
| 2022 |
Zhang Z, Pope M, Shakoor N, Pless R, Mockler TC, Stylianou A. Comparing Deep Learning Approaches for Understanding Genotype × Phenotype Interactions in Biomass Sorghum. Frontiers in Artificial Intelligence. 5: 872858. PMID 35860344 DOI: 10.3389/frai.2022.872858 |
0.11 |
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| 2011 |
Vining K, Pomraning KR, Wilhelm L, Priest HD, Ma C, Zhu R, Etherington E, Pellegrini M, Mockler T, Freitag M, Strauss SH. Developmental variation in DNA methylation in poplar (Populus trichocarpa) Bmc Proceedings. 5: P177. DOI: 10.1186/1753-6561-5-S7-P177 |
0.069 |
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| 2012 |
Verde I, Bassil N, Scalabrin S, Gilmore B, Lawley CT, Gasic K, Micheletti D, Rosyara UR, Cattonaro F, Vendramin E, Main D, Aramini V, Blas AL, Mockler TC, Bryant DW, et al. Correction: Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm Plos One. 7. DOI: 10.1371/annotation/33f1ba92-c304-4757-91aa-555de64a0768 |
0.05 |
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| Hide low-probability matches. |
