Ryohei Yasuda - Publications

Affiliations: 
2005-2012 Neurobiology Duke University, Durham, NC 
 2012- Neuronal Signal Transduction Max Planck Florida Institute for Neuroscience 
Area:
FRET, two photon imaging, Synaptic Plasticity

74 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Bajar BT, Guan X, Lam A, Lin MZ, Yasuda R, Laviv T, Chu J. FRET Imaging of Rho GTPase Activity with Red Fluorescent Protein-Based FRET Pairs. Methods in Molecular Biology (Clifton, N.J.). 2438: 31-43. PMID 35147933 DOI: 10.1007/978-1-0716-2035-9_2  0.786
2021 O'Neil SD, Rácz B, Brown WE, Gao Y, Soderblom EJ, Yasuda R, Soderling SH. Action potential-coupled Rho GTPase signaling drives presynaptic plasticity. Elife. 10. PMID 34269176 DOI: 10.7554/eLife.63756  0.344
2021 Sun Y, Smirnov M, Kamasawa N, Yasuda R. Rapid Ultrastructural Changes in the PSD and Surrounding Membrane after induction of structural LTP in Single Dendritic Spines. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 34266899 DOI: 10.1523/JNEUROSCI.1964-20.2021  0.635
2021 Grinman E, Nakahata Y, Avchalumov Y, Espadas I, Swarnkar S, Yasuda R, Puthanveettil SV. Activity-regulated synaptic targeting of lncRNA ADEPTR mediates structural plasticity by localizing Sptn1 and AnkB in dendrites. Science Advances. 7. PMID 33863727 DOI: 10.1126/sciadv.abf0605  0.328
2021 Laviv T, Yasuda R. Imaging neuronal protein signaling dynamics in vivo. Current Opinion in Neurobiology. 69: 68-75. PMID 33684848 DOI: 10.1016/j.conb.2021.02.002  0.797
2020 Nishizono H, Yasuda R, Laviv T. Methodologies and Challenges for CRISPR/Cas9 Mediated Genome Editing of the Mammalian Brain. Frontiers in Genome Editing. 2: 602970. PMID 34713226 DOI: 10.3389/fgeed.2020.602970  0.773
2020 Szatmari E, Moran C, Cohen S, Jacob A, Parra-Bueno P, Kamasawa N, Guerrero-Given D, Klein M, Stackman R, Yasuda R. ADAP1/Centaurin-α1 negatively regulates dendritic spine function and memory formation in the hippocampus. Eneuro. PMID 33139322 DOI: 10.1523/ENEURO.0111-20.2020  0.683
2020 Chen LF, Lyons MR, Liu F, Green MV, Hedrick NG, Williams AB, Narayanan A, Yasuda R, West AE. The NMDA receptor subunit GluN3A regulates synaptic activity-induced and myocyte enhancer factor 2C (MEF2C)-dependent transcription. The Journal of Biological Chemistry. PMID 32393578 DOI: 10.1074/Jbc.Ra119.010266  0.804
2020 O'Banion CP, Yasuda R. Fluorescent sensors for neuronal signaling. Current Opinion in Neurobiology. 63: 31-41. PMID 32203701 DOI: 10.1016/j.conb.2020.02.007  0.798
2019 Laviv T, Scholl B, Parra-Bueno P, Foote B, Zhang C, Yan L, Hayano Y, Chu J, Yasuda R. In Vivo Imaging of the Coupling between Neuronal and CREB Activity in the Mouse Brain. Neuron. PMID 31883788 DOI: 10.1016/J.Neuron.2019.11.028  0.819
2019 Chang JY, Nakahata Y, Hayano Y, Yasuda R. Mechanisms of Ca/calmodulin-dependent kinase II activation in single dendritic spines. Nature Communications. 10: 2784. PMID 31239443 DOI: 10.1038/s41467-019-10694-z  0.354
2019 Saneyoshi T, Matsuno H, Suzuki A, Murakoshi H, Hedrick NG, Agnello E, O'Connell R, Stratton MM, Yasuda R, Hayashi Y. Reciprocal Activation within a Kinase-Effector Complex Underlying Persistence of Structural LTP. Neuron. PMID 31078368 DOI: 10.1016/J.Neuron.2019.04.012  0.81
2018 Colgan LA, Hu M, Misler JA, Parra-Bueno P, Moran CM, Leitges M, Yasuda R. PKCα integrates spatiotemporally distinct Ca and autocrine BDNF signaling to facilitate synaptic plasticity. Nature Neuroscience. PMID 30013171 DOI: 10.1038/S41593-018-0184-3  0.397
2018 Desbois M, Crawley O, Evans PR, Baker ST, Masuho I, Yasuda R, Grill B. PAM forms an atypical SCF ubiquitin ligase complex that ubiquitinates and degrades NMNAT2. The Journal of Biological Chemistry. PMID 29997255 DOI: 10.1074/Jbc.Ra118.002176  0.459
2018 Smirnov MS, Garrett TR, Yasuda R. An open-source tool for analysis and automatic identification of dendritic spines using machine learning. Plos One. 13: e0199589. PMID 29975722 DOI: 10.1371/Journal.Pone.0199589  0.752
2018 Evans PR, Parra-Bueno P, Smirnov MS, Lustberg DJ, Dudek SM, Hepler JR, Yasuda R. RGS14 Restricts Plasticity in Hippocampal CA2 by Limiting Postsynaptic Calcium Signaling. Eneuro. 5. PMID 29911178 DOI: 10.1523/ENEURO.0353-17.2018  0.811
2018 Martyn AC, Toth K, Schmalzigaug R, Hedrick NG, Rodriguiz RM, Yasuda R, Wetsel WC, Premont RT. GIT1 regulates synaptic structural plasticity underlying learning. Plos One. 13: e0194350. PMID 29554125 DOI: 10.1371/Journal.Pone.0194350  0.782
2017 Hedrick NG, Yasuda R. Regulation of Rho GTPase proteins during spine structural plasticity for the control of local dendritic plasticity. Current Opinion in Neurobiology. 45: 193-201. PMID 28709063 DOI: 10.1016/J.Conb.2017.06.002  0.815
2017 Chang JY, Parra-Bueno P, Laviv T, Szatmari EM, Lee SR, Yasuda R. CaMKII Autophosphorylation Is Necessary for Optimal Integration of Ca(2+) Signals during LTP Induction, but Not Maintenance. Neuron. 94: 800-808.e4. PMID 28521133 DOI: 10.1016/J.Neuron.2017.04.041  0.817
2017 Laviv T, Yasuda R. Erratum: An optical probe of synaptic plasticity. Nature Biotechnology. 35: 481. PMID 28486470 DOI: 10.1038/Nbt0517-481C  0.762
2017 Murakoshi H, Shin ME, Parra-Bueno P, Szatmari EM, Shibata ACE, Yasuda R. Kinetics of Endogenous CaMKII Required for Synaptic Plasticity Revealed by Optogenetic Kinase Inhibitor. Neuron. 94: 690. PMID 28472663 DOI: 10.1016/j.neuron.2017.04.027  0.713
2017 Murakoshi H, Shin ME, Parra-Bueno P, Szatmari EM, Shibata AC, Yasuda R. Kinetics of Endogenous CaMKII Required for Synaptic Plasticity Revealed by Optogenetic Kinase Inhibitor. Neuron. PMID 28318784 DOI: 10.1016/j.neuron.2017.02.036  0.729
2017 Tang S, Yasuda R. Imaging ERK and PKA Activation in Single Dendritic Spines during Structural Plasticity. Neuron. PMID 28285819 DOI: 10.1016/J.Neuron.2017.02.032  0.316
2017 Smirnov MS, Evans PR, Garrett TR, Yan L, Yasuda R. Automated Remote Focusing, Drift Correction, and Photostimulation to Evaluate Structural Plasticity in Dendritic Spines. Plos One. 12: e0170586. PMID 28114380 DOI: 10.1371/Journal.Pone.0170586  0.794
2017 Laviv T, Yasuda R. An optical probe of synaptic plasticity. Nature Biotechnology. 35: 26-27. PMID 28072770 DOI: 10.1038/Nbt.3767  0.78
2017 Evans PR, Yasuda R. Extracellular Remodeling by Lysosomes: An Inside-Out Mechanism of Spine Plasticity. Neuron. 93: 6-8. PMID 28056345 DOI: 10.1016/J.Neuron.2016.12.025  0.544
2016 Laviv T, Kim BB, Chu J, Lam AJ, Lin MZ, Yasuda R. Simultaneous dual-color fluorescence lifetime imaging with novel red-shifted fluorescent proteins. Nature Methods. PMID 27798609 DOI: 10.1038/Nmeth.4046  0.79
2016 Harward SC, Hedrick NG, Hall CE, Parra-Bueno P, Milner TA, Pan E, Laviv T, Hempstead BL, Yasuda R, McNamara JO. Autocrine BDNF-TrkB signalling within a single dendritic spine. Nature. PMID 27680698 DOI: 10.1038/Nature19766  0.814
2016 Hedrick NG, Harward SC, Hall CE, Murakoshi H, McNamara JO, Yasuda R. Rho GTPase complementation underlies BDNF-dependent homo- and heterosynaptic plasticity. Nature. PMID 27680697 DOI: 10.1038/Nature19784  0.811
2016 Chu J, Oh Y, Sens A, Ataie N, Dana H, Macklin JJ, Laviv T, Welf ES, Dean KM, Zhang F, Kim BB, Tang CT, Hu M, Baird MA, Davidson MW, ... ... Yasuda R, et al. A bright cyan-excitable orange fluorescent protein facilitates dual-emission microscopy and enhances bioluminescence imaging in vivo. Nature Biotechnology. PMID 27240196 DOI: 10.1038/Nbt.3550  0.787
2015 Otmakhov N, Gorbacheva EV, Regmi S, Yasuda R, Hudmon A, Lisman J. Excitotoxic insult results in a long-lasting activation of CaMKIIα and mitochondrial damage in living hippocampal neurons. Plos One. 10: e0120881. PMID 25793533 DOI: 10.1371/Journal.Pone.0120881  0.319
2014 Kim IH, Wang H, Soderling SH, Yasuda R. Loss of Cdc42 leads to defects in synaptic plasticity and remote memory recall. Elife. 3. PMID 25006034 DOI: 10.7554/Elife.02839  0.394
2014 Yokoyama N, Yasuda R, Ichida K, Murakoshi H, Okada J, Yoshida S, Motoyama S. Recurrent peritoneal inclusion cysts successfully treated with oral contraceptives: a report of two cases. Clinical and Experimental Obstetrics & Gynecology. 41: 83-6. PMID 24707692 DOI: 10.12891/ceog16202014  0.51
2014 Oliveira AF, Yasuda R. Neurofibromin is the major ras inactivator in dendritic spines. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 776-83. PMID 24431436 DOI: 10.1523/JNEUROSCI.3096-13.2014  0.476
2014 Oliveira AF, Yasuda R. Imaging the activity of Ras superfamily GTPase proteins in small subcellular compartments in neurons. Methods in Molecular Biology (Clifton, N.J.). 1071: 109-28. PMID 24052384 DOI: 10.1007/978-1-62703-622-1_9  0.484
2014 Hedrick N, Yasuda R. Imaging signaling transduction in single dendritic spines Neuromethods. 84: 145-159. DOI: 10.1007/978-1-4614-9179-8-8  0.801
2013 Kim IH, Racz B, Wang H, Burianek L, Weinberg R, Yasuda R, Wetsel WC, Soderling SH. Disruption of Arp2/3 results in asymmetric structural plasticity of dendritic spines and progressive synaptic and behavioral abnormalities. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 6081-92. PMID 23554489 DOI: 10.1523/Jneurosci.0035-13.2013  0.395
2013 Szatmari EM, Oliveira AF, Sumner EJ, Yasuda R. Centaurin-α1-Ras-Elk-1 signaling at mitochondria mediates β-amyloid-induced synaptic dysfunction. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 5367-74. PMID 23516302 DOI: 10.1523/JNEUROSCI.2641-12.2013  0.729
2013 Oliveira AF, Yasuda R. An improved Ras sensor for highly sensitive and quantitative FRET-FLIM imaging. Plos One. 8: e52874. PMID 23349692 DOI: 10.1371/journal.pone.0052874  0.38
2012 Adler AF, Grigsby CL, Kulangara K, Wang H, Yasuda R, Leong KW. Nonviral direct conversion of primary mouse embryonic fibroblasts to neuronal cells. Molecular Therapy. Nucleic Acids. 1: e32. PMID 23344148 DOI: 10.1038/Mtna.2012.25  0.332
2012 Chen Q, Cichon J, Wang W, Qiu L, Lee SJ, Campbell NR, Destefino N, Goard MJ, Fu Z, Yasuda R, Looger LL, Arenkiel BR, Gan WB, Feng G. Imaging neural activity using Thy1-GCaMP transgenic mice. Neuron. 76: 297-308. PMID 23083733 DOI: 10.1016/J.Neuron.2012.07.011  0.645
2012 Uezu A, Okada H, Murakoshi H, del Vescovo CD, Yasuda R, Diviani D, Soderling SH. Modified SH2 domain to phototrap and identify phosphotyrosine proteins from subcellular sites within cells. Proceedings of the National Academy of Sciences of the United States of America. 109: E2929-38. PMID 23027962 DOI: 10.1073/Pnas.1207358109  0.558
2012 Lisman J, Yasuda R, Raghavachari S. Mechanisms of CaMKII action in long-term potentiation. Nature Reviews. Neuroscience. 13: 169-82. PMID 22334212 DOI: 10.1038/Nrn3192  0.73
2012 Murakoshi H, Yasuda R. Postsynaptic signaling during plasticity of dendritic spines. Trends in Neurosciences. 35: 135-43. PMID 22222350 DOI: 10.1016/j.tins.2011.12.002  0.558
2012 Murakoshi H, Yasuda R. 1PT207 Duration of CaMKII activation required for plasticity of dendritic spines revealed by photo-activatable CaMKII inhibitor(The 50th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 52: S103. DOI: 10.2142/biophys.52.S103_3  0.558
2011 Ramsey AJ, Milenkovic M, Oliveira AF, Escobedo-Lozoya Y, Seshadri S, Salahpour A, Sawa A, Yasuda R, Caron MG. Impaired NMDA receptor transmission alters striatal synapses and DISC1 protein in an age-dependent manner. Proceedings of the National Academy of Sciences of the United States of America. 108: 5795-800. PMID 21436042 DOI: 10.1073/Pnas.1012621108  0.778
2011 Yasuda R, Murakoshi H. The mechanisms underlying the spatial spreading of signaling activity. Current Opinion in Neurobiology. 21: 313-21. PMID 21429735 DOI: 10.1016/j.conb.2011.02.008  0.558
2011 Murakoshi H, Wang H, Yasuda R. Local, persistent activation of Rho GTPases during plasticity of single dendritic spines. Nature. 472: 100-4. PMID 21423166 DOI: 10.1038/nature09823  0.693
2011 Patterson M, Yasuda R. Signalling pathways underlying structural plasticity of dendritic spines. British Journal of Pharmacology. 163: 1626-38. PMID 21410464 DOI: 10.1111/j.1476-5381.2011.01328.x  0.668
2011 Li J, Kanju P, Patterson M, Chew WL, Cho SH, Gilmour I, Oliver T, Yasuda R, Ghio A, Simon SA, Liedtke W. TRPV4-mediated calcium influx into human bronchial epithelia upon exposure to diesel exhaust particles. Environmental Health Perspectives. 119: 784-93. PMID 21245013 DOI: 10.1289/Ehp.1002807  0.55
2011 Murakoshi H, Yasuda R. 3K1522 Imaging Rho GTPases activation in single dendritic spines by 2-photon fluorescence lifetime imaging microscopy(Cell biology 4,The 49th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 51: S147. DOI: 10.2142/biophys.51.S147_3  0.558
2011 Samineni P, Fischer MC, Liu HC, Yasuda R, Warren WS. Nonlinear phase contrast imaging in neuronal tissue Optics Infobase Conference Papers. DOI: 10.1364/Ntm.2011.Nmd3  0.317
2010 Svitkina T, Lin WH, Webb DJ, Yasuda R, Wayman GA, Van Aelst L, Soderling SH. Regulation of the postsynaptic cytoskeleton: roles in development, plasticity, and disorders. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 14937-42. PMID 21068295 DOI: 10.1523/Jneurosci.4276-10.2010  0.377
2010 Patterson MA, Szatmari EM, Yasuda R. AMPA receptors are exocytosed in stimulated spines and adjacent dendrites in a Ras-ERK-dependent manner during long-term potentiation. Proceedings of the National Academy of Sciences of the United States of America. 107: 15951-6. PMID 20733080 DOI: 10.1073/pnas.0913875107  0.774
2010 Lee MC, Yasuda R, Ehlers MD. Metaplasticity at single glutamatergic synapses. Neuron. 66: 859-70. PMID 20620872 DOI: 10.1016/J.Neuron.2010.05.015  0.565
2010 MURAKOSHI H, YASUDA R. Two-Photon Lifetime Imaging of Signal Transduction in Neurons Seibutsu Butsuri. 50: 023-026. DOI: 10.2142/BIOPHYS.50.023  0.558
2009 Lee SJ, Yasuda R. Spatiotemporal Regulation of Signaling in and out of Dendritic Spines: CaMKII and Ras. The Open Neuroscience Journal. 3: 117-127. PMID 20463853 DOI: 10.2174/1874082000903020117  0.694
2009 Simons SB, Escobedo Y, Yasuda R, Dudek SM. Regional differences in hippocampal calcium handling provide a cellular mechanism for limiting plasticity. Proceedings of the National Academy of Sciences of the United States of America. 106: 14080-4. PMID 19666491 DOI: 10.1073/pnas.0904775106  0.648
2009 Lee SJ, Escobedo-Lozoya Y, Szatmari EM, Yasuda R. Activation of CaMKII in single dendritic spines during long-term potentiation. Nature. 458: 299-304. PMID 19295602 DOI: 10.1038/nature07842  0.804
2009 Murakoshi H, Yasuda R. 1TA5-03 Imaging Rho GTPases activation in single dendritic spines by 2-photon fluorescence lifetime imaging microscopy(The 47th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 49: S31. DOI: 10.2142/biophys.49.S31_3  0.558
2008 Harvey CD, Ehrhardt AG, Cellurale C, Zhong H, Yasuda R, Davis RJ, Svoboda K. A genetically encoded fluorescent sensor of ERK activity. Proceedings of the National Academy of Sciences of the United States of America. 105: 19264-9. PMID 19033456 DOI: 10.1073/Pnas.0804598105  0.799
2008 Harvey CD, Yasuda R, Zhong H, Svoboda K. The spread of Ras activity triggered by activation of a single dendritic spine. Science (New York, N.Y.). 321: 136-40. PMID 18556515 DOI: 10.1126/science.1159675  0.827
2008 Murakoshi H, Lee SJ, Yasuda R. Highly sensitive and quantitative FRET-FLIM imaging in single dendritic spines using improved non-radiative YFP. Brain Cell Biology. 36: 31-42. PMID 18512154 DOI: 10.1007/S11068-008-9024-9  0.726
2008 Fischer MC, Liu HC, Piletic IR, Escobedo-Lozoya Y, Yasuda R, Warren WS. Self-phase modulation signatures of neuronal activity. Optics Letters. 33: 219-21. PMID 18246134 DOI: 10.1364/Ol.33.000219  0.783
2008 Liu HC, Fischer MC, Samineni P, Escobedo-Lozoya Y, Yasuda R, Warren WS. Intrinsic nonlinear optical signatures of neuronal activity Optics Infobase Conference Papers. DOI: 10.1364/Fio.2008.Fwd2  0.778
2007 Fischer MC, Liu H, Piletic IR, Ye T, Yasuda R, Warren WS. Self-phase modulation and two-photon absorption imaging of cells and active neurons Progress in Biomedical Optics and Imaging - Proceedings of Spie. 6442. DOI: 10.1117/12.698693  0.417
2006 Scheuss V, Yasuda R, Sobczyk A, Svoboda K. Nonlinear [Ca2+] signaling in dendrites and spines caused by activity-dependent depression of Ca2+ extrusion. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 8183-94. PMID 16885232 DOI: 10.1523/Jneurosci.1962-06.2006  0.785
2006 Svoboda K, Yasuda R. Principles of two-photon excitation microscopy and its applications to neuroscience. Neuron. 50: 823-39. PMID 16772166 DOI: 10.1016/j.neuron.2006.05.019  0.522
2006 Yasuda R, Harvey CD, Zhong H, Sobczyk A, van Aelst L, Svoboda K. Supersensitive Ras activation in dendrites and spines revealed by two-photon fluorescence lifetime imaging. Nature Neuroscience. 9: 283-91. PMID 16429133 DOI: 10.1038/Nn1635  0.803
2006 Yasuda R, Harvey CD, Zhong H, Sobczyk A, van Aelst L, Svoboda K. Erratum: Supersensitive Ras activation in dendrites and spines revealed by two-photon fluorescence lifetime imaging Nature Neuroscience. 9: 453-453. DOI: 10.1038/Nn0306-453A  0.782
2004 Pologruto TA, Yasuda R, Svoboda K. Monitoring neural activity and [Ca2+] with genetically encoded Ca2+ indicators. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 24: 9572-9. PMID 15509744 DOI: 10.1523/Jneurosci.2854-04.2004  0.797
2004 Nimchinsky EA, Yasuda R, Oertner TG, Svoboda K. The number of glutamate receptors opened by synaptic stimulation in single hippocampal spines. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 24: 2054-64. PMID 14985448 DOI: 10.1523/JNEUROSCI.5066-03.2004  0.805
2004 Yasuda R, Nimchinsky EA, Scheuss V, Pologruto TA, Oertner TG, Sabatini BL, Svoboda K. Imaging calcium concentration dynamics in small neuronal compartments. Science's Stke : Signal Transduction Knowledge Environment. 2004: pl5. PMID 14872098 DOI: 10.1126/Stke.2192004Pl5  0.776
2003 Yasuda R, Sabatini BL, Svoboda K. Plasticity of calcium channels in dendritic spines. Nature Neuroscience. 6: 948-55. PMID 12937422 DOI: 10.1038/nn1112  0.704
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