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Karel Svoboda - Publications

Affiliations: 
HHMI Janelia Farm Research Campus, Ashburn, VA, United States 
Area:
neocortical circuits
Website:
https://www.janelia.org/people/karel-svoboda

186 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Inagaki HK, Chen S, Ridder MC, Sah P, Li N, Yang Z, Hasanbegovic H, Gao Z, Gerfen CR, Svoboda K. A midbrain-thalamus-cortex circuit reorganizes cortical dynamics to initiate movement. Cell. 185: 1065-1081.e23. PMID 35245431 DOI: 10.1016/j.cell.2022.02.006  0.755
2021 Liu LD, Chen S, Hou H, West SJ, Faulkner M, Economo MN, Li N, Svoboda K. Accurate Localization of Linear Probe Electrode Arrays across Multiple Brains. Eneuro. 8. PMID 34697075 DOI: 10.1523/ENEURO.0241-21.2021  0.784
2021 Finkelstein A, Fontolan L, Economo MN, Li N, Romani S, Svoboda K. Publisher Correction: Attractor dynamics gate cortical information flow during decision-making. Nature Neuroscience. PMID 34012095 DOI: 10.1038/s41593-021-00869-7  0.77
2021 Finkelstein A, Fontolan L, Economo MN, Li N, Romani S, Svoboda K. Attractor dynamics gate cortical information flow during decision-making. Nature Neuroscience. PMID 33875892 DOI: 10.1038/s41593-021-00840-6  0.795
2021 Steinmetz NA, Aydin C, Lebedeva A, Okun M, Pachitariu M, Bauza M, Beau M, Bhagat J, Böhm C, Broux M, Chen S, Colonell J, Gardner RJ, Karsh B, Kloosterman F, ... ... Svoboda K, et al. Neuropixels 2.0: A miniaturized high-density probe for stable, long-term brain recordings. Science (New York, N.Y.). 372. PMID 33859006 DOI: 10.1126/science.abf4588  0.788
2021 Xie ME, Adam Y, Fan LZ, Böhm UL, Kinsella I, Zhou D, Rozsa M, Singh A, Svoboda K, Paninski L, Cohen AE. High-fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo. Cell Reports. 35: 108954. PMID 33826882 DOI: 10.1016/j.celrep.2021.108954  0.454
2020 Abbott L, Svoboda K. Brain-wide interactions between neural circuits. Current Opinion in Neurobiology. 65: iii-v. PMID 33357763 DOI: 10.1016/j.conb.2020.12.012  0.468
2020 Abbott LF, Bock DD, Callaway EM, Denk W, Dulac C, Fairhall AL, Fiete I, Harris KM, Helmstaedter M, Jain V, Kasthuri N, LeCun Y, Lichtman JW, Littlewood PB, Luo L, ... ... Svoboda K, et al. The Mind of a Mouse. Cell. 182: 1372-1376. PMID 32946777 DOI: 10.1016/J.Cell.2020.08.010  0.78
2020 Wei Z, Lin BJ, Chen TW, Daie K, Svoboda K, Druckmann S. A comparison of neuronal population dynamics measured with calcium imaging and electrophysiology. Plos Computational Biology. 16: e1008198. PMID 32931495 DOI: 10.1371/Journal.Pcbi.1008198  0.591
2020 Peron S, Pancholi R, Voelcker B, Wittenbach JD, Ólafsdóttir HF, Freeman J, Svoboda K. Recurrent interactions in local cortical circuits. Nature. 579: 256-259. PMID 32132709 DOI: 10.1038/S41586-020-2062-X  0.816
2020 Lu R, Liang Y, Meng G, Zhou P, Svoboda K, Paninski L, Ji N. Rapid mesoscale volumetric imaging of neural activity with synaptic resolution. Nature Methods. PMID 32123393 DOI: 10.1038/S41592-020-0760-9  0.419
2019 Li N, Chen S, Guo ZV, Chen H, Huo Y, Inagaki HK, Chen G, Davis C, Hansel D, Guo C, Svoboda K. Spatiotemporal constraints on optogenetic inactivation in cortical circuits. Elife. 8. PMID 31736463 DOI: 10.7554/Elife.48622  0.808
2019 Kerlin A, Boaz M, Flickinger D, MacLennan BJ, Dean MB, Davis C, Spruston N, Svoboda K. Functional clustering of dendritic activity during decision-making. Elife. 8. PMID 31663507 DOI: 10.7554/Elife.46966  0.655
2019 Winnubst J, Bas E, Ferreira TA, Wu Z, Economo MN, Edson P, Arthur BJ, Bruns C, Rokicki K, Schauder D, Olbris DJ, Murphy SD, Ackerman DG, Arshadi C, Baldwin P, ... ... Svoboda K, et al. Reconstruction of 1,000 Projection Neurons Reveals New Cell Types and Organization of Long-Range Connectivity in the Mouse Brain. Cell. PMID 31495573 DOI: 10.1016/J.Cell.2019.07.042  0.814
2019 Yu J, Hu H, Agmon A, Svoboda K. Recruitment of GABAergic Interneurons in the Barrel Cortex during Active Tactile Behavior. Neuron. PMID 31466734 DOI: 10.1016/J.Neuron.2019.07.027  0.427
2019 Kazemipour A, Novak O, Flickinger D, Marvin JS, Abdelfattah AS, King J, Borden PM, Kim JJ, Al-Abdullatif SH, Deal PE, Miller EW, Schreiter ER, Druckmann S, Svoboda K, Looger LL, et al. Author Correction: Kilohertz frame-rate two-photon tomography. Nature Methods. PMID 31388143 DOI: 10.1038/S41592-019-0545-1  0.532
2019 Gao Z, Thomas AM, Economo MN, Abrego AM, Svoboda K, De Zeeuw CI, Li N. Response to "Fallacies of Mice Experiments". Neuroinformatics. PMID 31377994 DOI: 10.1007/s12021-019-09433-y  0.774
2019 Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, Huang YC, Campagnola L, Seeman SC, Yu J, Zheng J, Grimm JB, Patel R, Friedrich J, Mensh BD, ... ... Svoboda K, et al. Bright and photostable chemigenetic indicators for extended in vivo voltage imaging. Science (New York, N.Y.). PMID 31371562 DOI: 10.1126/Science.Aav6416  0.594
2019 Kazemipour A, Novak O, Flickinger D, Marvin JS, Abdelfattah AS, King J, Borden PM, Kim JJ, Al-Abdullatif SH, Deal PE, Miller EW, Schreiter ER, Druckmann S, Svoboda K, Looger LL, et al. Kilohertz frame-rate two-photon tomography. Nature Methods. 16: 778-786. PMID 31363222 DOI: 10.1038/S41592-019-0493-9  0.61
2019 Dana H, Sun Y, Mohar B, Hulse BK, Kerlin AM, Hasseman JP, Tsegaye G, Tsang A, Wong A, Patel R, Macklin JJ, Chen Y, Konnerth A, Jayaraman V, Looger LL, ... ... Svoboda K, et al. High-performance calcium sensors for imaging activity in neuronal populations and microcompartments. Nature Methods. PMID 31209382 DOI: 10.1038/S41592-019-0435-6  0.812
2019 Campagner D, Evans MH, Chlebikova K, Colins-Rodriguez A, Loft MSE, Fox S, Pettifer D, Humphries MD, Svoboda K, Petersen RS. Prediction of choice from competing mechanosensory and choice-memory cues during active tactile decision making. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 30850514 DOI: 10.1523/Jneurosci.2217-18.2019  0.786
2019 Inagaki HK, Fontolan L, Romani S, Svoboda K. Discrete attractor dynamics underlies persistent activity in the frontal cortex. Nature. 566: 212-217. PMID 30728503 DOI: 10.1038/S41586-019-0919-7  0.776
2019 Wei Z, Inagaki H, Li N, Svoboda K, Druckmann S. An orderly single-trial organization of population dynamics in premotor cortex predicts behavioral variability. Nature Communications. 10: 216. PMID 30644387 DOI: 10.1038/S41467-018-08141-6  0.774
2019 Li N, Chen S, Guo ZV, Chen H, Huo Y, Inagaki HK, Chen G, Davis C, Hansel D, Guo C, Svoboda K. Author response: Spatiotemporal constraints on optogenetic inactivation in cortical circuits Elife. DOI: 10.7554/Elife.48622.Sa2  0.78
2019 Kerlin A, Mohar B, Flickinger D, MacLennan BJ, Dean MB, Davis C, Spruston N, Svoboda K. Author response: Functional clustering of dendritic activity during decision-making Elife. DOI: 10.7554/Elife.46966.029  0.77
2018 Economo MN, Viswanathan S, Tasic B, Bas E, Winnubst J, Menon V, Graybuck LT, Nguyen TN, Smith KA, Yao Z, Wang L, Gerfen CR, Chandrashekar J, Zeng H, Looger LL, ... Svoboda K, et al. Distinct descending motor cortex pathways and their roles in movement. Nature. 563: 79-84. PMID 30382200 DOI: 10.1038/S41586-018-0642-9  0.808
2018 Tasic B, Yao Z, Graybuck LT, Smith KA, Nguyen TN, Bertagnolli D, Goldy J, Garren E, Economo MN, Viswanathan S, Penn O, Bakken T, Menon V, Miller J, Fong O, ... ... Svoboda K, et al. Shared and distinct transcriptomic cell types across neocortical areas. Nature. 563: 72-78. PMID 30382198 DOI: 10.1038/S41586-018-0654-5  0.8
2018 Gao Z, Davis C, Thomas AM, Economo MN, Abrego AM, Svoboda K, De Zeeuw CI, Li N. A cortico-cerebellar loop for motor planning. Nature. PMID 30333626 DOI: 10.1038/s41586-018-0633-x  0.797
2018 Dana H, Novak O, Guardado-Montesino M, Fransen JW, Hu A, Borghuis BG, Guo C, Kim DS, Svoboda K. Thy1 transgenic mice expressing the red fluorescent calcium indicator jRGECO1a for neuronal population imaging in vivo. Plos One. 13: e0205444. PMID 30308007 DOI: 10.1371/Journal.Pone.0205444  0.367
2018 Guo K, Yamawaki N, Svoboda K, Shepherd GMG. Anterolateral motor cortex connects with a medial subdivision of ventromedial thalamus through cell-type-specific circuits, forming an excitatory thalamo-cortico-thalamic loop via layer 1 apical tuft dendrites of layer 5B pyramidal tract type neurons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 30143573 DOI: 10.1523/Jneurosci.1333-18.2018  0.681
2018 Luo L, Callaway EM, Svoboda K. Genetic Dissection of Neural Circuits: A Decade of Progress. Neuron. 98: 865. PMID 29772206 DOI: 10.1016/j.neuron.2018.05.004  0.425
2018 Luo L, Callaway EM, Svoboda K. Genetic Dissection of Neural Circuits: A Decade of Progress. Neuron. 98: 256-281. PMID 29673479 DOI: 10.1016/j.neuron.2018.03.040  0.554
2018 Inagaki HK, Inagaki M, Romani S, Svoboda K. Low-dimensional and monotonic preparatory activity in mouse anterior lateral motor cortex. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 29593054 DOI: 10.1523/Jneurosci.3152-17.2018  0.791
2018 Vaxenburg R, Wyche I, Svoboda K, Efros AL, Hires SA. Dynamic cues for whisker-based object localization: An analytical solution to vibration during active whisker touch. Plos Computational Biology. 14: e1006032. PMID 29584719 DOI: 10.1371/journal.pcbi.1006032  0.701
2017 Svoboda K, Li N. Neural mechanisms of movement planning: motor cortex and beyond. Current Opinion in Neurobiology. 49: 33-41. PMID 29172091 DOI: 10.1016/j.conb.2017.10.023  0.727
2017 Jun JJ, Steinmetz NA, Siegle JH, Denman DJ, Bauza M, Barbarits B, Lee AK, Anastassiou CA, Andrei A, Aydın Ç, Barbic M, Blanche TJ, Bonin V, Couto J, Dutta B, ... ... Svoboda K, et al. Fully integrated silicon probes for high-density recording of neural activity. Nature. 551: 232-236. PMID 29120427 DOI: 10.1038/Nature24636  0.802
2017 McElvain LE, Friedman B, Karten HJ, Svoboda K, Wang F, Deschênes M, Kleinfeld D. Circuits in the rodent brainstem that control whisking in concert with other orofacial motor actions. Neuroscience. PMID 28843993 DOI: 10.1016/J.Neuroscience.2017.08.034  0.308
2017 Sun Y, Nern A, Franconville R, Dana H, Schreiter ER, Looger LL, Svoboda K, Kim DS, Hermundstad AM, Jayaraman V. Neural signatures of dynamic stimulus selection in Drosophila. Nature Neuroscience. PMID 28604683 DOI: 10.1038/Nn.4581  0.616
2017 Gutnisky DA, Yu J, Hires SA, To MS, Bale M, Svoboda K, Golomb D. Mechanisms underlying a thalamocortical transformation during active tactile sensation. Plos Computational Biology. 13: e1005576. PMID 28591219 DOI: 10.1371/Journal.Pcbi.1005576  0.815
2017 Chen TW, Li N, Daie K, Svoboda K. A Map of Anticipatory Activity in Mouse Motor Cortex. Neuron. 94: 866-879.e4. PMID 28521137 DOI: 10.1016/J.Neuron.2017.05.005  0.801
2017 Guo ZV, Inagaki HK, Daie K, Druckmann S, Gerfen CR, Svoboda K. Maintenance of persistent activity in a frontal thalamocortical loop. Nature. PMID 28467817 DOI: 10.1038/Nature22324  0.749
2016 Yu J, Gutnisky DA, Hires SA, Svoboda K. Layer 4 fast-spiking interneurons filter thalamocortical signals during active somatosensation. Nature Neuroscience. PMID 27749825 DOI: 10.1038/Nn.4412  0.726
2016 Li N, Daie K, Svoboda K, Druckmann S. Corrigendum: Robust neuronal dynamics in premotor cortex during motor planning. Nature. PMID 27362233 DOI: 10.1038/Nature18623  0.727
2016 Li N, Daie K, Svoboda K, Druckmann S. Robust neuronal dynamics in premotor cortex during motor planning. Nature. PMID 27074502 DOI: 10.1038/Nature17643  0.727
2016 Dana H, Mohar B, Sun Y, Narayan S, Gordus A, Hasseman JP, Tsegaye G, Holt GT, Hu A, Walpita D, Patel R, Macklin JJ, Bargmann CI, Ahrens MB, Schreiter ER, ... ... Svoboda K, et al. Sensitive red protein calcium indicators for imaging neural activity. Elife. 5. PMID 27011354 DOI: 10.7554/Elife.12727  0.81
2016 Economo MN, Clack NG, Lavis LD, Gerfen CR, Svoboda K, Myers EW, Chandrashekar J. A platform for brain-wide imaging and reconstruction of individual neurons. Elife. 5. PMID 26796534 DOI: 10.7554/Elife.10566  0.768
2016 Dana H, Mohar B, Sun Y, Narayan S, Gordus A, Hasseman JP, Tsegaye G, Holt GT, Hu A, Walpita D, Patel R, Macklin JJ, Bargmann CI, Ahrens MB, Schreiter ER, ... ... Svoboda K, et al. Author response: Sensitive red protein calcium indicators for imaging neural activity Elife. DOI: 10.7554/Elife.12727.035  0.761
2015 Teeters JL, Godfrey K, Young R, Dang C, Friedsam C, Wark B, Asari H, Peron S, Li N, Peyrache A, Denisov G, Siegle JH, Olsen SR, Martin C, Chun M, ... ... Svoboda K, et al. Neurodata Without Borders: Creating a Common Data Format for Neurophysiology. Neuron. 88: 629-634. PMID 26590340 DOI: 10.1016/J.Neuron.2015.10.025  0.771
2015 Andrew Hires S, Gutnisky DA, Yu J, O'Connor DH, Svoboda K. Low-noise encoding of active touch by layer 4 in the somatosensory cortex. Elife. 4. PMID 26245232 DOI: 10.7554/Elife.06619  0.772
2015 Peron SP, Freeman J, Iyer V, Guo C, Svoboda K. A Cellular Resolution Map of Barrel Cortex Activity during Tactile Behavior. Neuron. 86: 783-99. PMID 25913859 DOI: 10.1016/J.Neuron.2015.03.027  0.822
2015 Peron S, Chen TW, Svoboda K. Comprehensive imaging of cortical networks. Current Opinion in Neurobiology. 32: 115-123. PMID 25880117 DOI: 10.1016/J.Conb.2015.03.016  0.82
2015 Hooks BM, Lin JY, Guo C, Svoboda K. Dual-channel circuit mapping reveals sensorimotor convergence in the primary motor cortex. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 35: 4418-26. PMID 25762684 DOI: 10.1523/Jneurosci.3741-14.2015  0.76
2015 Li N, Chen TW, Guo ZV, Gerfen CR, Svoboda K. A motor cortex circuit for motor planning and movement. Nature. 519: 51-6. PMID 25731172 DOI: 10.1038/Nature14178  0.801
2015 Sofroniew NJ, Vlasov YA, Hires SA, Freeman J, Svoboda K. Author response: Neural coding in barrel cortex during whisker-guided locomotion Elife. DOI: 10.7554/Elife.12559.015  0.701
2015 Economo MN, Clack NG, Lavis LD, Gerfen CR, Svoboda K, Myers EW, Chandrashekar J. Author response: A platform for brain-wide imaging and reconstruction of individual neurons Elife. DOI: 10.7554/Elife.10566.023  0.755
2015 Hires SA, Gutnisky DA, Yu J, O'Connor DH, Svoboda K. Author response: Low-noise encoding of active touch by layer 4 in the somatosensory cortex Elife. DOI: 10.7554/Elife.06619.018  0.774
2015 Hires SA, Gutnisky DA, Yu J, O’Connor DH, Svoboda K. Low-noise encoding of active touch by layer 4 in the somatosensory cortex Elife. 4. DOI: 10.7554/eLife.06619  0.774
2014 Dana H, Chen TW, Hu A, Shields BC, Guo C, Looger LL, Kim DS, Svoboda K. Thy1-GCaMP6 transgenic mice for neuronal population imaging in vivo. Plos One. 9: e108697. PMID 25250714 DOI: 10.1371/Journal.Pone.0108697  0.702
2014 Sofroniew NJ, Cohen JD, Lee AK, Svoboda K. Natural whisker-guided behavior by head-fixed mice in tactile virtual reality. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 9537-50. PMID 25031397 DOI: 10.1523/Jneurosci.0712-14.2014  0.301
2014 Kuhlman SJ, O'Connor DH, Fox K, Svoboda K. Structural plasticity within the barrel cortex during initial phases of whisker-dependent learning. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 6078-83. PMID 24760867 DOI: 10.1523/Jneurosci.4919-12.2014  0.808
2014 Guo ZV, Hires SA, Li N, O'Connor DH, Komiyama T, Ophir E, Huber D, Bonardi C, Morandell K, Gutnisky D, Peron S, Xu NL, Cox J, Svoboda K. Procedures for behavioral experiments in head-fixed mice. Plos One. 9: e88678. PMID 24520413 DOI: 10.1371/Journal.Pone.0088678  0.764
2014 Guo ZV, Li N, Huber D, Ophir E, Gutnisky D, Ting JT, Feng G, Svoboda K. Flow of cortical activity underlying a tactile decision in mice. Neuron. 81: 179-94. PMID 24361077 DOI: 10.1016/J.Neuron.2013.10.020  0.798
2013 Rah JC, Bas E, Colonell J, Mishchenko Y, Karsh B, Fetter RD, Myers EW, Chklovskii DB, Svoboda K, Harris TD, Isaac JT. Thalamocortical input onto layer 5 pyramidal neurons measured using quantitative large-scale array tomography. Frontiers in Neural Circuits. 7: 177. PMID 24273494 DOI: 10.3389/Fncir.2013.00177  0.398
2013 Hires SA, Pammer L, Svoboda K, Golomb D. Tapered whiskers are required for active tactile sensation. Elife. 2: e01350. PMID 24252879 DOI: 10.7554/Elife.01350  0.773
2013 Wardill TJ, Chen TW, Schreiter ER, Hasseman JP, Tsegaye G, Fosque BF, Behnam R, Shields BC, Ramirez M, Kimmel BE, Kerr RA, Jayaraman V, Looger LL, Svoboda K, Kim DS. A neuron-based screening platform for optimizing genetically-encoded calcium indicators. Plos One. 8: e77728. PMID 24155972 DOI: 10.1371/Journal.Pone.0077728  0.718
2013 Chen TW, Wardill TJ, Sun Y, Pulver SR, Renninger SL, Baohan A, Schreiter ER, Kerr RA, Orger MB, Jayaraman V, Looger LL, Svoboda K, Kim DS. Ultrasensitive fluorescent proteins for imaging neuronal activity. Nature. 499: 295-300. PMID 23868258 DOI: 10.1038/Nature12354  0.729
2013 Hires SA, Efros AL, Svoboda K. Whisker dynamics underlying tactile exploration. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 9576-91. PMID 23739955 DOI: 10.1523/JNEUROSCI.5846-12.2013  0.701
2013 O'Connor DH, Hires SA, Guo ZV, Li N, Yu J, Sun QQ, Huber D, Svoboda K. Neural coding during active somatosensation revealed using illusory touch. Nature Neuroscience. 16: 958-65. PMID 23727820 DOI: 10.1038/Nn.3419  0.786
2013 Pammer L, O'Connor DH, Hires SA, Clack NG, Huber D, Myers EW, Svoboda K. The mechanical variables underlying object localization along the axis of the whisker. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 6726-41. PMID 23595731 DOI: 10.1523/Jneurosci.4316-12.2013  0.769
2013 Hooks BM, Mao T, Gutnisky DA, Yamawaki N, Svoboda K, Shepherd GM. Organization of cortical and thalamic input to pyramidal neurons in mouse motor cortex. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 748-60. PMID 23303952 DOI: 10.1523/Jneurosci.4338-12.2013  0.821
2013 Hires SA, Pammer L, Svoboda K, Golomb D. Author response: Tapered whiskers are required for active tactile sensation Elife. DOI: 10.7554/Elife.01350.015  0.773
2012 Xu NL, Harnett MT, Williams SR, Huber D, O'Connor DH, Svoboda K, Magee JC. Nonlinear dendritic integration of sensory and motor input during an active sensing task. Nature. 492: 247-51. PMID 23143335 DOI: 10.1038/Nature11601  0.822
2012 Akerboom J, Chen TW, Wardill TJ, Tian L, Marvin JS, Mutlu S, Calderón NC, Esposti F, Borghuis BG, Sun XR, Gordus A, Orger MB, Portugues R, Engert F, Macklin JJ, ... ... Svoboda K, et al. Optimization of a GCaMP calcium indicator for neural activity imaging. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 13819-40. PMID 23035093 DOI: 10.1523/Jneurosci.2601-12.2012  0.801
2012 Petreanu L, Gutnisky DA, Huber D, Xu NL, O'Connor DH, Tian L, Looger L, Svoboda K. Activity in motor-sensory projections reveals distributed coding in somatosensation. Nature. 489: 299-303. PMID 22922646 DOI: 10.1038/Nature11321  0.807
2012 Clack NG, O'Connor DH, Huber D, Petreanu L, Hires A, Peron S, Svoboda K, Myers EW. Automated tracking of whiskers in videos of head fixed rodents. Plos Computational Biology. 8: e1002591. PMID 22792058 DOI: 10.1371/Journal.Pcbi.1002591  0.776
2012 Holtmaat A, de Paola V, Wilbrecht L, Trachtenberg JT, Svoboda K, Portera-Cailliau C. Imaging neocortical neurons through a chronic cranial window. Cold Spring Harbor Protocols. 2012: 694-701. PMID 22661440 DOI: 10.1101/Pdb.Prot069617  0.818
2012 Huber D, Gutnisky DA, Peron S, O'Connor DH, Wiegert JS, Tian L, Oertner TG, Looger LL, Svoboda K. Multiple dynamic representations in the motor cortex during sensorimotor learning. Nature. 484: 473-8. PMID 22538608 DOI: 10.1038/Nature11039  0.809
2012 Madisen L, Mao T, Koch H, Zhuo JM, Berenyi A, Fujisawa S, Hsu YW, Garcia AJ, Gu X, Zanella S, Kidney J, Gu H, Mao Y, Hooks BM, Boyden ES, ... ... Svoboda K, et al. A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing. Nature Neuroscience. 15: 793-802. PMID 22446880 DOI: 10.1038/Nn.3078  0.778
2012 Zariwala HA, Borghuis BG, Hoogland TM, Madisen L, Tian L, De Zeeuw CI, Zeng H, Looger LL, Svoboda K, Chen TW. A Cre-dependent GCaMP3 reporter mouse for neuronal imaging in vivo. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 3131-41. PMID 22378886 DOI: 10.1523/Jneurosci.4469-11.2012  0.804
2012 Jacob V, Petreanu L, Wright N, Svoboda K, Fox K. Regular spiking and intrinsic bursting pyramidal cells show orthogonal forms of experience-dependent plasticity in layer V of barrel cortex. Neuron. 73: 391-404. PMID 22284191 DOI: 10.1016/J.Neuron.2011.11.034  0.763
2011 Mao T, Kusefoglu D, Hooks BM, Huber D, Petreanu L, Svoboda K. Long-range neuronal circuits underlying the interaction between sensory and motor cortex. Neuron. 72: 111-23. PMID 21982373 DOI: 10.1016/J.Neuron.2011.07.029  0.806
2011 Hooks BM, Hires SA, Zhang YX, Huber D, Petreanu L, Svoboda K, Shepherd GM. Laminar analysis of excitatory local circuits in vibrissal motor and sensory cortical areas. Plos Biology. 9: e1000572. PMID 21245906 DOI: 10.1371/Journal.Pbio.1000572  0.797
2011 Peron S, Svoboda K. From cudgel to scalpel: toward precise neural control with optogenetics. Nature Methods. 8: 30-4. PMID 21191369 DOI: 10.1038/Nmeth.F.325  0.79
2011 Gillette TA, Brown KM, Svoboda K, Liu Y, Ascoli GA. DIADEMchallenge.Org: A compendium of resources fostering the continuous development of automated neuronal reconstruction Neuroinformatics. 9: 303-304. DOI: 10.1007/S12021-011-9104-3  0.305
2010 Suter BA, O'Connor T, Iyer V, Petreanu LT, Hooks BM, Kiritani T, Svoboda K, Shepherd GM. Ephus: multipurpose data acquisition software for neuroscience experiments. Frontiers in Neural Circuits. 4: 100. PMID 21960959 DOI: 10.3389/Fncir.2010.00100  0.77
2010 Oviedo HV, Bureau I, Svoboda K, Zador AM. The functional asymmetry of auditory cortex is reflected in the organization of local cortical circuits. Nature Neuroscience. 13: 1413-20. PMID 20953193 DOI: 10.1038/nn.2659  0.361
2010 O'Connor DH, Peron SP, Huber D, Svoboda K. Neural activity in barrel cortex underlying vibrissa-based object localization in mice. Neuron. 67: 1048-61. PMID 20869600 DOI: 10.1016/J.Neuron.2010.08.026  0.822
2010 Komiyama T, Sato TR, O'Connor DH, Zhang YX, Huber D, Hooks BM, Gabitto M, Svoboda K. Learning-related fine-scale specificity imaged in motor cortex circuits of behaving mice. Nature. 464: 1182-6. PMID 20376005 DOI: 10.1038/Nature08897  0.829
2010 Wilbrecht L, Holtmaat A, Wright N, Fox K, Svoboda K. Structural plasticity underlies experience-dependent functional plasticity of cortical circuits. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 4927-32. PMID 20371813 DOI: 10.1523/Jneurosci.6403-09.2010  0.796
2010 Sato TR, Svoboda K. The functional properties of barrel cortex neurons projecting to the primary motor cortex. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 4256-60. PMID 20335461 DOI: 10.1523/JNEUROSCI.3774-09.2010  0.563
2010 O'Connor DH, Clack NG, Huber D, Komiyama T, Myers EW, Svoboda K. Vibrissa-based object localization in head-fixed mice. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 1947-67. PMID 20130203 DOI: 10.1523/Jneurosci.3762-09.2010  0.71
2009 Tian L, Hires SA, Mao T, Huber D, Chiappe ME, Chalasani SH, Petreanu L, Akerboom J, McKinney SA, Schreiter ER, Bargmann CI, Jayaraman V, Svoboda K, Looger LL. Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators. Nature Methods. 6: 875-81. PMID 19898485 DOI: 10.1038/Nmeth.1398  0.818
2009 O'Connor DH, Huber D, Svoboda K. Reverse engineering the mouse brain. Nature. 461: 923-9. PMID 19829372 DOI: 10.1038/Nature08539  0.636
2009 Holtmaat A, Svoboda K. Experience-dependent structural synaptic plasticity in the mammalian brain. Nature Reviews. Neuroscience. 10: 647-58. PMID 19693029 DOI: 10.1038/Nrn2699  0.676
2009 Knott GW, Holtmaat A, Trachtenberg JT, Svoboda K, Welker E. A protocol for preparing GFP-labeled neurons previously imaged in vivo and in slice preparations for light and electron microscopic analysis. Nature Protocols. 4: 1145-56. PMID 19617886 DOI: 10.1038/Nprot.2009.114  0.79
2009 Holtmaat A, Bonhoeffer T, Chow DK, Chuckowree J, De Paola V, Hofer SB, Hübener M, Keck T, Knott G, Lee WC, Mostany R, Mrsic-Flogel TD, Nedivi E, Portera-Cailliau C, Svoboda K, et al. Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window. Nature Protocols. 4: 1128-44. PMID 19617885 DOI: 10.1038/Nprot.2009.89  0.808
2009 Zhong H, Sia GM, Sato TR, Gray NW, Mao T, Khuchua Z, Huganir RL, Svoboda K. Subcellular dynamics of type II PKA in neurons. Neuron. 62: 363-74. PMID 19447092 DOI: 10.1016/J.Neuron.2009.03.013  0.805
2009 Lewis TL, Mao T, Svoboda K, Arnold DB. Myosin-dependent targeting of transmembrane proteins to neuronal dendrites. Nature Neuroscience. 12: 568-76. PMID 19377470 DOI: 10.1038/Nn.2318  0.567
2009 Bohland JW, Wu C, Barbas H, Bokil H, Bota M, Breiter HC, Cline HT, Doyle JC, Freed PJ, Greenspan RJ, Haber SN, Hawrylycz M, Herrera DG, Hilgetag CC, Huang ZJ, ... ... Svoboda K, et al. A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale. Plos Computational Biology. 5: e1000334. PMID 19325892 DOI: 10.1371/Journal.Pcbi.1000334  0.764
2009 Zito K, Scheuss V, Knott G, Hill T, Svoboda K. Rapid functional maturation of nascent dendritic spines. Neuron. 61: 247-58. PMID 19186167 DOI: 10.1016/J.Neuron.2008.10.054  0.774
2009 Petreanu L, Mao T, Sternson SM, Svoboda K. The subcellular organization of neocortical excitatory connections. Nature. 457: 1142-5. PMID 19151697 DOI: 10.1038/Nature07709  0.822
2008 Chen BE, Trachtenberg JT, Holtmaat AJ, Svoboda K. Long-term, high-resolution imaging in the neocortex in vivo. Csh Protocols. 2008: pdb.prot4902. PMID 21356671 DOI: 10.1101/pdb.prot4902  0.803
2008 Harvey CD, Ehrhardt AG, Cellurale C, Zhong H, Yasuda R, Davis RJ, Svoboda K. A genetically encoded fluorescent sensor of ERK activity. Proceedings of the National Academy of Sciences of the United States of America. 105: 19264-9. PMID 19033456 DOI: 10.1073/Pnas.0804598105  0.796
2008 Harvey CD, Yasuda R, Zhong H, Svoboda K. The spread of Ras activity triggered by activation of a single dendritic spine. Science (New York, N.Y.). 321: 136-40. PMID 18556515 DOI: 10.1126/science.1159675  0.797
2008 Bureau I, Shepherd GM, Svoboda K. Circuit and plasticity defects in the developing somatosensory cortex of FMR1 knock-out mice. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 5178-88. PMID 18480274 DOI: 10.1523/JNEUROSCI.1076-08.2008  0.526
2008 Mao T, O'Connor DH, Scheuss V, Nakai J, Svoboda K. Characterization and subcellular targeting of GCaMP-type genetically-encoded calcium indicators. Plos One. 3: e1796. PMID 18350138 DOI: 10.1371/Journal.Pone.0001796  0.813
2008 Luo L, Callaway EM, Svoboda K. Genetic dissection of neural circuits. Neuron. 57: 634-60. PMID 18341986 DOI: 10.1016/j.neuron.2008.01.002  0.538
2008 Huber D, Petreanu L, Ghitani N, Ranade S, Hromádka T, Mainen Z, Svoboda K. Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice. Nature. 451: 61-4. PMID 18094685 DOI: 10.1038/Nature06445  0.812
2008 Sabatini BL, Svoboda K. Ca2+ Signaling in dendritic spines Structural and Functional Organization of the Synapse. 441-458. DOI: 10.1007/978-0-387-77232-5_15  0.497
2007 Harvey CD, Svoboda K. Locally dynamic synaptic learning rules in pyramidal neuron dendrites. Nature. 450: 1195-200. PMID 18097401 DOI: 10.1038/nature06416  0.614
2007 Sato TR, Gray NW, Mainen ZF, Svoboda K. The functional microarchitecture of the mouse barrel cortex. Plos Biology. 5: e189. PMID 17622195 DOI: 10.1371/journal.pbio.0050189  0.823
2007 Petreanu L, Huber D, Sobczyk A, Svoboda K. Channelrhodopsin-2-assisted circuit mapping of long-range callosal projections. Nature Neuroscience. 10: 663-8. PMID 17435752 DOI: 10.1038/Nn1891  0.801
2007 Sobczyk A, Svoboda K. Activity-dependent plasticity of the NMDA-receptor fractional Ca2+ current. Neuron. 53: 17-24. PMID 17196527 DOI: 10.1016/J.Neuron.2006.11.016  0.781
2006 Gray NW, Weimer RM, Bureau I, Svoboda K. Rapid redistribution of synaptic PSD-95 in the neocortex in vivo. Plos Biology. 4: e370. PMID 17090216 DOI: 10.1371/journal.pbio.0040370  0.781
2006 Knott GW, Holtmaat A, Wilbrecht L, Welker E, Svoboda K. Spine growth precedes synapse formation in the adult neocortex in vivo. Nature Neuroscience. 9: 1117-24. PMID 16892056 DOI: 10.1038/Nn1747  0.775
2006 Scheuss V, Yasuda R, Sobczyk A, Svoboda K. Nonlinear [Ca2+] signaling in dendrites and spines caused by activity-dependent depression of Ca2+ extrusion. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 8183-94. PMID 16885232 DOI: 10.1523/Jneurosci.1962-06.2006  0.776
2006 Holtmaat A, Wilbrecht L, Knott GW, Welker E, Svoboda K. Experience-dependent and cell-type-specific spine growth in the neocortex. Nature. 441: 979-83. PMID 16791195 DOI: 10.1038/Nature04783  0.805
2006 Svoboda K, Yasuda R. Principles of two-photon excitation microscopy and its applications to neuroscience. Neuron. 50: 823-39. PMID 16772166 DOI: 10.1016/j.neuron.2006.05.019  0.487
2006 De Paola V, Holtmaat A, Knott G, Song S, Wilbrecht L, Caroni P, Svoboda K. Cell type-specific structural plasticity of axonal branches and boutons in the adult neocortex. Neuron. 49: 861-75. PMID 16543134 DOI: 10.1016/J.Neuron.2006.02.017  0.783
2006 Yasuda R, Harvey CD, Zhong H, Sobczyk A, van Aelst L, Svoboda K. Supersensitive Ras activation in dendrites and spines revealed by two-photon fluorescence lifetime imaging. Nature Neuroscience. 9: 283-91. PMID 16429133 DOI: 10.1038/Nn1635  0.795
2006 Yasuda R, Harvey CD, Zhong H, Sobczyk A, van Aelst L, Svoboda K. Erratum: Supersensitive Ras activation in dendrites and spines revealed by two-photon fluorescence lifetime imaging Nature Neuroscience. 9: 453-453. DOI: 10.1038/Nn0306-453A  0.78
2006 Bureau I, Shepherd G, Svoboda K. [S20]: Defects in the developing cortical circuits of fmr1 mutant mice International Journal of Developmental Neuroscience. 24: 480-480. DOI: 10.1016/j.ijdevneu.2006.09.025  0.55
2005 Karpova AY, Tervo DG, Gray NW, Svoboda K. Rapid and reversible chemical inactivation of synaptic transmission in genetically targeted neurons. Neuron. 48: 727-35. PMID 16337911 DOI: 10.1016/j.neuron.2005.11.015  0.815
2005 Portera-Cailliau C, Weimer RM, De Paola V, Caroni P, Svoboda K. Diverse modes of axon elaboration in the developing neocortex. Plos Biology. 3: e272. PMID 16026180 DOI: 10.1371/journal.pbio.0030272  0.774
2005 Sobczyk A, Scheuss V, Svoboda K. NMDA receptor subunit-dependent [Ca2+] signaling in individual hippocampal dendritic spines. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 25: 6037-46. PMID 15987933 DOI: 10.1523/Jneurosci.1221-05.2005  0.773
2005 Shepherd GM, Svoboda K. Laminar and columnar organization of ascending excitatory projections to layer 2/3 pyramidal neurons in rat barrel cortex. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 25: 5670-9. PMID 15958733 DOI: 10.1523/JNEUROSCI.1173-05.2005  0.564
2005 Shepherd GM, Stepanyants A, Bureau I, Chklovskii D, Svoboda K. Geometric and functional organization of cortical circuits. Nature Neuroscience. 8: 782-90. PMID 15880111 DOI: 10.1038/nn1447  0.815
2005 Egger V, Svoboda K, Mainen ZF. Dendrodendritic synaptic signals in olfactory bulb granule cells: local spine boost and global low-threshold spike. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 25: 3521-30. PMID 15814782 DOI: 10.1523/Jneurosci.4746-04.2005  0.759
2005 Holtmaat AJ, Trachtenberg JT, Wilbrecht L, Shepherd GM, Zhang X, Knott GW, Svoboda K. Transient and persistent dendritic spines in the neocortex in vivo. Neuron. 45: 279-91. PMID 15664179 DOI: 10.1016/J.Neuron.2005.01.003  0.805
2004 Pologruto TA, Yasuda R, Svoboda K. Monitoring neural activity and [Ca2+] with genetically encoded Ca2+ indicators. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 24: 9572-9. PMID 15509744 DOI: 10.1523/Jneurosci.2854-04.2004  0.784
2004 Brecht M, Fee MS, Garaschuk O, Helmchen F, Margrie TW, Svoboda K, Osten P. Novel approaches to monitor and manipulate single neurons in vivo. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 24: 9223-7. PMID 15496655 DOI: 10.1523/JNEUROSCI.3344-04.2004  0.589
2004 Di Cristo G, Wu C, Chattopadhyaya B, Ango F, Knott G, Welker E, Svoboda K, Huang ZJ. Subcellular domain-restricted GABAergic innervation in primary visual cortex in the absence of sensory and thalamic inputs. Nature Neuroscience. 7: 1184-6. PMID 15475951 DOI: 10.1038/Nn1334  0.666
2004 Zito K, Knott G, Shepherd GM, Shenolikar S, Svoboda K. Induction of spine growth and synapse formation by regulation of the spine actin cytoskeleton. Neuron. 44: 321-34. PMID 15473970 DOI: 10.1016/j.neuron.2004.09.022  0.743
2004 Wang Y, Guo HF, Pologruto TA, Hannan F, Hakker I, Svoboda K, Zhong Y. Stereotyped odor-evoked activity in the mushroom body of Drosophila revealed by green fluorescent protein-based Ca2+ imaging. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 24: 6507-14. PMID 15269261 DOI: 10.1523/Jneurosci.3727-03.2004  0.784
2004 Bureau I, Shepherd GM, Svoboda K. Precise development of functional and anatomical columns in the neocortex. Neuron. 42: 789-801. PMID 15182718 DOI: 10.1016/j.neuron.2004.05.002  0.597
2004 Maravall M, Koh IY, Lindquist WB, Svoboda K. Experience-dependent changes in basal dendritic branching of layer 2/3 pyramidal neurons during a critical period for developmental plasticity in rat barrel cortex. Cerebral Cortex (New York, N.Y. : 1991). 14: 655-64. PMID 15054062 DOI: 10.1093/cercor/bhh026  0.721
2004 Nimchinsky EA, Yasuda R, Oertner TG, Svoboda K. The number of glutamate receptors opened by synaptic stimulation in single hippocampal spines. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 24: 2054-64. PMID 14985448 DOI: 10.1523/JNEUROSCI.5066-03.2004  0.775
2004 Maravall M, Stern EA, Svoboda K. Development of intrinsic properties and excitability of layer 2/3 pyramidal neurons during a critical period for sensory maps in rat barrel cortex. Journal of Neurophysiology. 92: 144-56. PMID 14973314 DOI: 10.1152/jn.00598.2003  0.722
2004 Yasuda R, Nimchinsky EA, Scheuss V, Pologruto TA, Oertner TG, Sabatini BL, Svoboda K. Imaging calcium concentration dynamics in small neuronal compartments. Science's Stke : Signal Transduction Knowledge Environment. 2004: pl5. PMID 14872098 DOI: 10.1126/Stke.2192004Pl5  0.792
2003 Yasuda R, Sabatini BL, Svoboda K. Plasticity of calcium channels in dendritic spines. Nature Neuroscience. 6: 948-55. PMID 12937422 DOI: 10.1038/nn1112  0.642
2003 Egger V, Svoboda K, Mainen ZF. Mechanisms of lateral inhibition in the olfactory bulb: efficiency and modulation of spike-evoked calcium influx into granule cells. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 23: 7551-8. PMID 12930793 DOI: 10.1523/Jneurosci.23-20-07551.2003  0.762
2003 Pologruto TA, Sabatini BL, Svoboda K. ScanImage: flexible software for operating laser scanning microscopes. Biomedical Engineering Online. 2: 13. PMID 12801419 DOI: 10.1186/1475-925X-2-13  0.761
2003 Shepherd GM, Pologruto TA, Svoboda K. Circuit analysis of experience-dependent plasticity in the developing rat barrel cortex. Neuron. 38: 277-89. PMID 12718861 DOI: 10.1016/S0896-6273(03)00152-1  0.817
2003 Takahashi T, Svoboda K, Malinow R. Experience strengthening transmission by driving AMPA receptors into synapses. Science (New York, N.Y.). 299: 1585-8. PMID 12624270 DOI: 10.1126/science.1079886  0.567
2002 Trachtenberg JT, Chen BE, Knott GW, Feng G, Sanes JR, Welker E, Svoboda K. Long-term in vivo imaging of experience-dependent synaptic plasticity in adult cortex. Nature. 420: 788-94. PMID 12490942 DOI: 10.1038/Nature01273  0.759
2002 Zito K, Svoboda K. Activity-dependent synaptogenesis in the adult Mammalian cortex. Neuron. 35: 1015-7. PMID 12354392 DOI: 10.1016/S0896-6273(02)00903-0  0.673
2002 Oertner TG, Svoboda K. Subliminal messages in hippocampal pyramidal cells. The Journal of Physiology. 543: 397. PMID 12205176 DOI: 10.1113/jphysiol.2002.023606  0.63
2002 Oertner TG, Sabatini BL, Nimchinsky EA, Svoboda K. Facilitation at single synapses probed with optical quantal analysis. Nature Neuroscience. 5: 657-64. PMID 12055631 DOI: 10.1038/nn867  0.775
2002 Koh IY, Lindquist WB, Zito K, Nimchinsky EA, Svoboda K. An image analysis algorithm for dendritic spines. Neural Computation. 14: 1283-310. PMID 12020447 DOI: 10.1162/089976602753712945  0.809
2002 Sabatini BL, Oertner TG, Svoboda K. The life cycle of Ca(2+) ions in dendritic spines. Neuron. 33: 439-52. PMID 11832230 DOI: 10.1016/S0896-6273(02)00573-1  0.717
2002 Nimchinsky EA, Sabatini BL, Svoboda K. Structure and function of dendritic spines. Annual Review of Physiology. 64: 313-53. PMID 11826272 DOI: 10.1146/annurev.physiol.64.081501.160008  0.758
2001 Stern EA, Maravall M, Svoboda K. Rapid development and plasticity of layer 2/3 maps in rat barrel cortex in vivo. Neuron. 31: 305-15. PMID 11502260 DOI: 10.1016/S0896-6273(01)00360-9  0.703
2001 Nimchinsky EA, Oberlander AM, Svoboda K. Abnormal development of dendritic spines in FMR1 knock-out mice. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 21: 5139-46. PMID 11438589 DOI: 10.1523/Jneurosci.21-14-05139.2001  0.698
2001 Sabatini BL, Maravall M, Svoboda K. Ca(2+) signaling in dendritic spines. Current Opinion in Neurobiology. 11: 349-56. PMID 11399434 DOI: 10.1016/S0959-4388(00)00218-X  0.741
2001 Wang Y, Wright NJ, Guo H, Xie Z, Svoboda K, Malinow R, Smith DP, Zhong Y. Genetic manipulation of the odor-evoked distributed neural activity in the Drosophila mushroom body. Neuron. 29: 267-76. PMID 11182097 DOI: 10.1016/S0896-6273(01)00196-9  0.567
2000 Sabatini BL, Svoboda K. Analysis of calcium channels in single spines using optical fluctuation analysis. Nature. 408: 589-93. PMID 11117746 DOI: 10.1038/35046076  0.548
2000 Chen BE, Lendvai B, Nimchinsky EA, Burbach B, Fox K, Svoboda K. Imaging high-resolution structure of GFP-expressing neurons in neocortex in vivo. Learning & Memory (Cold Spring Harbor, N.Y.). 7: 433-41. PMID 11112802 DOI: 10.1101/Lm.32700  0.806
2000 Cox CL, Denk W, Tank DW, Svoboda K. Action potentials reliably invade axonal arbors of rat neocortical neurons. Proceedings of the National Academy of Sciences of the United States of America. 97: 9724-8. PMID 10931955 DOI: 10.1073/pnas.170278697  0.78
2000 Lendvai B, Stern EA, Chen B, Svoboda K. Experience-dependent plasticity of dendritic spines in the developing rat barrel cortex in vivo. Nature. 404: 876-81. PMID 10786794 DOI: 10.1038/35009107  0.406
2000 Maravall M, Mainen ZF, Sabatini BL, Svoboda K. Estimating intracellular calcium concentrations and buffering without wavelength ratioing. Biophysical Journal. 78: 2655-67. PMID 10777761 DOI: 10.1016/S0006-3495(00)76809-3  0.787
1999 Helmchen F, Svoboda K, Denk W, Tank DW. In vivo dendritic calcium dynamics in deep-layer cortical pyramidal neurons. Nature Neuroscience. 2: 989-96. PMID 10526338 DOI: 10.1038/14788  0.776
1999 Shi SH, Hayashi Y, Petralia RS, Zaman SH, Wenthold RJ, Svoboda K, Malinow R. Rapid spine delivery and redistribution of AMPA receptors after synaptic NMDA receptor activation. Science (New York, N.Y.). 284: 1811-6. PMID 10364548 DOI: 10.1126/Science.284.5421.1811  0.601
1999 Mainen ZF, Maletic-Savatic M, Shi SH, Hayashi Y, Malinow R, Svoboda K. Two-photon imaging in living brain slices. Methods (San Diego, Calif.). 18: 231-9, 181. PMID 10356355 DOI: 10.1006/meth.1999.0776  0.807
1999 Mainen ZF, Malinow R, Svoboda K. Synaptic calcium transients in single spines indicate that NMDA receptors are not saturated. Nature. 399: 151-5. PMID 10335844 DOI: 10.1038/20187  0.786
1999 Svoboda K, Mainen ZF. Synaptic [Ca2+]: intracellular stores spill their guts. Neuron. 22: 427-30. PMID 10197523 DOI: 10.1016/S0896-6273(00)80698-4  0.759
1999 Svoboda K, Helmchen F, Denk W, Tank DW. Spread of dendritic excitation in layer 2/3 pyramidal neurons in rat barrel cortex in vivo. Nature Neuroscience. 2: 65-73. PMID 10195182 DOI: 10.1038/4569  0.776
1999 Maletic-Savatic M, Malinow R, Svoboda K. Rapid dendritic morphogenesis in CA1 hippocampal dendrites induced by synaptic activity. Science (New York, N.Y.). 283: 1923-7. PMID 10082466 DOI: 10.1126/science.283.5409.1923  0.567
1999 Svoboda K, Burbach BJ, Lendvai B, Mainen ZF, Maravall M, Nimchinsky E, O’Brien P, Sabatini B, Stern E. 2-Photon Excitation Laser Scanning Microscopy for High Resolution Imaging In Scattering Biological Tissues: Applications to Neuroscience Microscopy and Microanalysis. 5: 1058-1059. DOI: 10.1017/S1431927600018614  0.773
1999 Maravall M, Mainen ZF, Svoboda K. Dendritic [ca2+] dynamics in the presence of immobile buffers and of dyes Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1606: 43-52. DOI: 10.1007/BFb0098159  0.778
1997 Denk W, Svoboda K. Photon upmanship: why multiphoton imaging is more than a gimmick. Neuron. 18: 351-7. PMID 9115730 DOI: 10.1016/S0896-6273(00)81237-4  0.513
1997 Svoboda K, Denk W, Kleinfeld D, Tank DW. In vivo dendritic calcium dynamics in neocortical pyramidal neurons. Nature. 385: 161-5. PMID 8990119 DOI: 10.1038/385161a0  0.745
1996 Svoboda K, Denk W, Knox WH, Tsuda S. Two-photon-excitation scanning microscopy of living neurons with a saturable Bragg reflector mode-locked diode-pumped Cr:LiSrAlFl laser. Optics Letters. 21: 1411-3. PMID 19876369 DOI: 10.1364/OL.21.001411  0.53
1996 Denk W, Yuste R, Svoboda K, Tank DW. Imaging calcium dynamics in dendritic spines. Current Opinion in Neurobiology. 6: 372-8. PMID 8794079 DOI: 10.1016/S0959-4388(96)80122-X  0.776
1996 Svoboda K, Tank DW, Denk W. Direct measurement of coupling between dendritic spines and shafts. Science (New York, N.Y.). 272: 716-9. PMID 8614831 DOI: 10.1126/Science.272.5262.716  0.745
1996 Svoboda K, Denk W, Knox WH, Tsuda S. Two-photon excitation scanning microscopy with a compact SBR-modelocked diode-pumped Cr:LiSAF laser Springer Series in Chemical Physics. 62: 135-136.  0.453
1995 Svoboda K, Mitra PP, Block SM. Fluctuation analysis of kinesin movement. Biophysical Journal. 68: 69S. PMID 7787104  0.633
1995 Block SM, Svoboda K. Analysis of high resolution recordings of motor movement. Biophysical Journal. 68: 230S-239S; discussio. PMID 7787083  0.633
1995 Yin H, Wang MD, Svoboda K, Landick R, Block SM, Gelles J. Transcription against an applied force. Science (New York, N.Y.). 270: 1653-7. PMID 7502073 DOI: 10.1126/Science.270.5242.1653  0.642
1994 Svoboda K, Block SM. Optical trapping of metallic Rayleigh particles. Optics Letters. 19: 930-2. PMID 19844491 DOI: 10.1364/Ol.19.000930  0.661
1994 Svoboda K, Block SM. Force and velocity measured for single kinesin molecules. Cell. 77: 773-84. PMID 8205624 DOI: 10.1016/0092-8674(94)90060-4  0.661
1994 Svoboda K, Mitra PP, Block SM. Fluctuation analysis of motor protein movement and single enzyme kinetics. Proceedings of the National Academy of Sciences of the United States of America. 91: 11782-6. PMID 7991536 DOI: 10.1073/Pnas.91.25.11782  0.661
1994 Svoboda K, Block SM. Biological applications of optical forces. Annual Review of Biophysics and Biomolecular Structure. 23: 247-85. PMID 7919782 DOI: 10.1146/Annurev.Bb.23.060194.001335  0.661
1993 Schmidt CF, Svoboda K, Lei N, Petsche IB, Berman LE, Safinya CR, Grest GS. Existence of a flat phase in red cell membrane skeletons. Science (New York, N.Y.). 259: 952-5. PMID 8438153 DOI: 10.1126/Science.8438153  0.486
1993 Svoboda K, Schmidt CF, Schnapp BJ, Block SM. Direct observation of kinesin stepping by optical trapping interferometry. Nature. 365: 721-7. PMID 8413650 DOI: 10.1038/365721A0  0.726
1992 Svoboda K, Schmidt CF, Branton D, Block SM. Conformation and elasticity of the isolated red blood cell membrane skeleton. Biophysical Journal. 63: 784-93. PMID 1420914 DOI: 10.1016/S0006-3495(92)81644-2  0.717
1991 Svoboda K, Schmidt C, Lei N, Safinya C, Block S, Branton D. Scattering Studies of the Isolated Red Blood Cell Skeleton, a Biological Two-Dimensional Polymer Mrs Proceedings. 248. DOI: 10.1557/Proc-248-63  0.709
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