Oliver Joaquin Rando - Publications

2002 Stanford University, Palo Alto, CA 

80 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Rando OJ. Intergenerational Transfer of Epigenetic Information in Sperm. Cold Spring Harbor Perspectives in Medicine. PMID 26801897 DOI: 10.1101/cshperspect.a022988  0.56
2015 Shea JM, Serra RW, Carone BR, Shulha HP, Kucukural A, Ziller MJ, Vallaster MP, Gu H, Tapper AR, Gardner PD, Meissner A, Garber M, Rando OJ. Genetic and Epigenetic Variation, but Not Diet, Shape the Sperm Methylome. Developmental Cell. 35: 750-8. PMID 26702833 DOI: 10.1016/j.devcel.2015.11.024  0.56
2015 Rege M, Subramanian V, Zhu C, Hsieh TS, Weiner A, Friedman N, Clauder-Münster S, Steinmetz LM, Rando OJ, Boyer LA, Peterson CL. Chromatin Dynamics and the RNA Exosome Function in Concert to Regulate Transcriptional Homeostasis. Cell Reports. PMID 26586442 DOI: 10.1016/j.celrep.2015.10.030  0.56
2015 Chen PB, Chen HV, Acharya D, Rando OJ, Fazzio TG. R loops regulate promoter-proximal chromatin architecture and cellular differentiation. Nature Structural & Molecular Biology. PMID 26551076 DOI: 10.1038/nsmb.3122  0.56
2015 Friedman N, Rando OJ. Epigenomics and the structure of the living genome. Genome Research. 25: 1482-90. PMID 26430158 DOI: 10.1101/gr.190165.115  0.56
2015 Hughes AL, Rando OJ. Comparative Genomics Reveals Chd1 as a Determinant of Nucleosome Spacing in Vivo. G3 (Bethesda, Md.). 5: 1889-97. PMID 26175451 DOI: 10.1534/g3.115.020271  0.56
2015 Hsieh TH, Weiner A, Lajoie B, Dekker J, Friedman N, Rando OJ. Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C. Cell. 162: 108-19. PMID 26119342 DOI: 10.1016/j.cell.2015.05.048  0.56
2015 Zhao-Shea R, DeGroot SR, Liu L, Vallaster M, Pang X, Su Q, Gao G, Rando OJ, Martin GE, George O, Gardner PD, Tapper AR. Increased CRF signalling in a ventral tegmental area-interpeduncular nucleus-medial habenula circuit induces anxiety during nicotine withdrawal. Nature Communications. 6: 6770. PMID 25898242 DOI: 10.1038/ncomms7770  0.56
2015 Rando OJ, Simmons RA. I'm eating for two: parental dietary effects on offspring metabolism. Cell. 161: 93-105. PMID 25815988 DOI: 10.1016/j.cell.2015.02.021  0.56
2015 Weiner A, Hsieh TH, Appleboim A, Chen HV, Rahat A, Amit I, Rando OJ, Friedman N. High-resolution chromatin dynamics during a yeast stress response. Molecular Cell. 58: 371-86. PMID 25801168 DOI: 10.1016/j.molcel.2015.02.002  0.56
2015 Hainer SJ, Gu W, Carone BR, Landry BD, Rando OJ, Mello CC, Fazzio TG. Suppression of pervasive noncoding transcription in embryonic stem cells by esBAF. Genes & Development. 29: 362-78. PMID 25691467 DOI: 10.1101/gad.253534.114  0.56
2015 Rando OJ. Ghosts in the genome: How one generation's experience can affect the next Scientist. 29.  0.56
2014 Yildirim O, Hung JH, Cedeno RJ, Weng Z, Lengner CJ, Rando OJ. A system for genome-wide histone variant dynamics in ES cells reveals dynamic MacroH2A2 replacement at promoters. Plos Genetics. 10: e1004515. PMID 25102063 DOI: 10.1371/journal.pgen.1004515  0.56
2014 Carone BR, Hung JH, Hainer SJ, Chou MT, Carone DM, Weng Z, Fazzio TG, Rando OJ. High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm. Developmental Cell. 30: 11-22. PMID 24998598 DOI: 10.1016/j.devcel.2014.05.024  0.56
2014 Sharma U, Rando OJ. Father-son chats: inheriting stress through sperm RNA. Cell Metabolism. 19: 894-5. PMID 24896534 DOI: 10.1016/j.cmet.2014.05.015  0.56
2014 Hughes AL, Rando OJ. Mechanisms underlying nucleosome positioning in vivo. Annual Review of Biophysics. 43: 41-63. PMID 24702039 DOI: 10.1146/annurev-biophys-051013-023114  0.56
2014 Soares LM, Radman-Livaja M, Lin SG, Rando OJ, Buratowski S. Feedback control of Set1 protein levels is important for proper H3K4 methylation patterns. Cell Reports. 6: 961-72. PMID 24613354 DOI: 10.1016/j.celrep.2014.02.017  0.56
2013 Möbius W, Osberg B, Tsankov AM, Rando OJ, Gerland U. Toward a unified physical model of nucleosome patterns flanking transcription start sites. Proceedings of the National Academy of Sciences of the United States of America. 110: 5719-24. PMID 23509245 DOI: 10.1073/pnas.1214048110  0.56
2013 Chen HV, Rando OJ. Painting by numbers: increasing the parts list for chromatin domains. Molecular Cell. 49: 620-1. PMID 23438859 DOI: 10.1016/j.molcel.2013.02.007  0.56
2013 Watanabe S, Radman-Livaja M, Rando OJ, Peterson CL. A histone acetylation switch regulates H2A.Z deposition by the SWR-C remodeling enzyme Science. 340: 195-199. DOI: 10.1126/science.1229758  0.56
2012 Schug TT, Erlebacher A, Leibowitz S, Ma L, Muglia LJ, Rando OJ, Rogers JM, Romero R, vom Saal FS, Wise DL. Fetal programming and environmental exposures: implications for prenatal care and preterm birth. Annals of the New York Academy of Sciences. 1276: 37-46. PMID 23278645 DOI: 10.1111/nyas.12003  0.56
2012 Rando OJ. Daddy issues: paternal effects on phenotype. Cell. 151: 702-8. PMID 23141533 DOI: 10.1016/j.cell.2012.10.020  0.56
2012 Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, Greven MC, Pierce BG, Dong X, Kundaje A, Cheng Y, Rando OJ, Birney E, Myers RM, Noble WS, Snyder M, et al. Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors. Genome Research. 22: 1798-812. PMID 22955990 DOI: 10.1101/gr.139105.112  0.56
2012 Weiner A, Chen HV, Liu CL, Rahat A, Klien A, Soares L, Gudipati M, Pfeffner J, Regev A, Buratowski S, Pleiss JA, Friedman N, Rando OJ. Systematic dissection of roles for chromatin regulators in a yeast stress response. Plos Biology. 10: e1001369. PMID 22912562 DOI: 10.1371/journal.pbio.1001369  0.56
2012 Hughes AL, Jin Y, Rando OJ, Struhl K. A functional evolutionary approach to identify determinants of nucleosome positioning: a unifying model for establishing the genome-wide pattern. Molecular Cell. 48: 5-15. PMID 22885008 DOI: 10.1016/j.molcel.2012.07.003  0.56
2012 Radman-Livaja M, Quan TK, Valenzuela L, Armstrong JA, van Welsem T, Kim T, Lee LJ, Buratowski S, van Leeuwen F, Rando OJ, Hartzog GA. A key role for Chd1 in histone H3 dynamics at the 3' ends of long genes in yeast. Plos Genetics. 8: e1002811. PMID 22807688 DOI: 10.1371/journal.pgen.1002811  0.56
2012 Carone BR, Rando OJ. Rewriting the epigenome. Cell. 149: 1422-3. PMID 22726428 DOI: 10.1016/j.cell.2012.06.008  0.56
2012 Fazzio TG, Rando OJ. NURDs are required for diversity. The Embo Journal. 31: 3036-7. PMID 22580827 DOI: 10.1038/emboj.2012.137  0.56
2012 Xu J, Yanagisawa Y, Tsankov AM, Hart C, Aoki K, Kommajosyula N, Steinmann KE, Bochicchio J, Russ C, Regev A, Rando OJ, Nusbaum C, Niki H, Milos P, Weng Z, et al. Genome-wide identification and characterization of replication origins by deep sequencing. Genome Biology. 13: R27. PMID 22531001 DOI: 10.1186/gb-2012-13-4-r27  0.56
2012 Rando OJ. Combinatorial complexity in chromatin structure and function: revisiting the histone code. Current Opinion in Genetics & Development. 22: 148-55. PMID 22440480 DOI: 10.1016/j.gde.2012.02.013  0.56
2012 Rando OJ, Winston F. Chromatin and transcription in yeast. Genetics. 190: 351-87. PMID 22345607 DOI: 10.1534/genetics.111.132266  0.56
2011 Yildirim O, Li R, Hung JH, Chen PB, Dong X, Ee LS, Weng Z, Rando OJ, Fazzio TG. Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells. Cell. 147: 1498-510. PMID 22196727 DOI: 10.1016/j.cell.2011.11.054  0.56
2011 Sikorski TW, Ficarro SB, Holik J, Kim T, Rando OJ, Marto JA, Buratowski S. Sub1 and RPA associate with RNA polymerase II at different stages of transcription. Molecular Cell. 44: 397-409. PMID 22055186 DOI: 10.1016/j.molcel.2011.09.013  0.56
2011 Tsankov A, Yanagisawa Y, Rhind N, Regev A, Rando OJ. Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization. Genome Research. 21: 1851-62. PMID 21914852 DOI: 10.1101/gr.122267.111  0.56
2011 Rando OJ. Genome-wide measurement of histone H3 replacement dynamics in yeast. Methods in Molecular Biology (Clifton, N.J.). 759: 41-60. PMID 21863480 DOI: 10.1007/978-1-61779-173-4_3  0.56
2011 Radman-Livaja M, Verzijlbergen KF, Weiner A, van Welsem T, Friedman N, Rando OJ, van Leeuwen F. Patterns and mechanisms of ancestral histone protein inheritance in budding yeast. Plos Biology. 9: e1001075. PMID 21666805 DOI: 10.1371/journal.pbio.1001075  0.56
2011 Radman-Livaja M, Ruben G, Weiner A, Friedman N, Kamakaka R, Rando OJ. Dynamics of Sir3 spreading in budding yeast: secondary recruitment sites and euchromatic localization. The Embo Journal. 30: 1012-26. PMID 21336256 DOI: 10.1038/emboj.2011.30  0.56
2011 Papamichos-Chronakis M, Watanabe S, Rando OJ, Peterson CL. Global regulation of H2A.Z localization by the INO80 chromatin-remodeling enzyme is essential for genome integrity Cell. 144: 200-213. PMID 21241891 DOI: 10.1016/j.cell.2010.12.021  0.56
2011 Ivanovska I, Jacques PÉ, Rando OJ, Robert F, Winston F. Control of chromatin structure by spt6: different consequences in coding and regulatory regions. Molecular and Cellular Biology. 31: 531-41. PMID 21098123 DOI: 10.1128/MCB.01068-10  0.56
2011 Lopes da Rosa J, Holik J, Green EM, Rando OJ, Kaufman PD. Overlapping regulation of CenH3 localization and histone H3 turnover by CAF-1 and HIR proteins in Saccharomyces cerevisiae. Genetics. 187: 9-19. PMID 20944015 DOI: 10.1534/genetics.110.123117  0.56
2010 Carone BR, Fauquier L, Habib N, Shea JM, Hart CE, Li R, Bock C, Li C, Gu H, Zamore PD, Meissner A, Weng Z, Hofmann HA, Friedman N, Rando OJ. Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals. Cell. 143: 1084-96. PMID 21183072 DOI: 10.1016/j.cell.2010.12.008  0.56
2010 Rando OJ. Genome-wide mapping of nucleosomes in yeast. Methods in Enzymology. 470: 105-18. PMID 20946808 DOI: 10.1016/S0076-6879(10)70005-7  0.56
2010 Kim TS, Liu CL, Yassour M, Holik J, Friedman N, Buratowski S, Rando OJ. RNA polymerase mapping during stress responses reveals widespread nonproductive transcription in yeast. Genome Biology. 11: R75. PMID 20637075 DOI: 10.1186/gb-2010-11-7-r75  0.56
2010 Tsankov AM, Thompson DA, Socha A, Regev A, Rando OJ. The role of nucleosome positioning in the evolution of gene regulation. Plos Biology. 8: e1000414. PMID 20625544 DOI: 10.1371/journal.pbio.1000414  0.56
2010 Jensen JD, Rando OJ. Recent evidence for pervasive adaptation targeting gene expression attributable to population size change. Proceedings of the National Academy of Sciences of the United States of America. 107: E109-10; author repl. PMID 20566840 DOI: 10.1073/pnas.1004391107  0.56
2010 Kaufman PD, Rando OJ. Chromatin as a potential carrier of heritable information. Current Opinion in Cell Biology. 22: 284-90. PMID 20299197 DOI: 10.1016/j.ceb.2010.02.002  0.56
2010 Radman-Livaja M, Liu CL, Friedman N, Schreiber SL, Rando OJ. Replication and active demethylation represent partially overlapping mechanisms for erasure of H3K4me3 in budding yeast. Plos Genetics. 6: e1000837. PMID 20140185 DOI: 10.1371/journal.pgen.1000837  0.4
2010 Weiner A, Hughes A, Yassour M, Rando OJ, Friedman N. High-resolution nucleosome mapping reveals transcription-dependent promoter packaging. Genome Research. 20: 90-100. PMID 19846608 DOI: 10.1101/gr.098509.109  0.56
2010 Radman-Livaja M, Rando OJ. Nucleosome positioning: how is it established, and why does it matter? Developmental Biology. 339: 258-66. PMID 19527704 DOI: 10.1016/j.ydbio.2009.06.012  0.56
2010 Radman-Livaja M, Liu CL, Friedman N, Schreiber SL, Rando OJ. Replication and active demethylation represent partially overlapping mechanisms for erasure of H3K4me3 in budding yeast Plos Genetics. 6. DOI: 10.1371/journal.pgen.1000837  0.56
2009 Hughes A, Rando OJ. Chromatin 'programming' by sequence--is there more to the nucleosome code than %GC? Journal of Biology. 8: 96. PMID 20067596 DOI: 10.1186/jbiol207  0.56
2009 Rowat AC, Bird JC, Agresti JJ, Rando OJ, Weitz DA. Tracking lineages of single cells in lines using a microfluidic device. Proceedings of the National Academy of Sciences of the United States of America. 106: 18149-54. PMID 19826080 DOI: 10.1073/pnas.0903163106  0.56
2009 Rando OJ, Chang HY. Genome-wide views of chromatin structure. Annual Review of Biochemistry. 78: 245-71. PMID 19317649 DOI: 10.1146/annurev.biochem.78.071107.134639  0.56
2008 Rando OJ. Evolution in a test tube: the hatchet before the scalpel. Cell. 135: 789-91. PMID 19041741 DOI: 10.1016/j.cell.2008.11.005  0.56
2008 Kaplan T, Liu CL, Erkmann JA, Holik J, Grunstein M, Kaufman PD, Friedman N, Rando OJ. Cell cycle- and chaperone-mediated regulation of H3K56ac incorporation in yeast. Plos Genetics. 4: e1000270. PMID 19023413 DOI: 10.1371/journal.pgen.1000270  0.56
2008 Chechik G, Oh E, Rando O, Weissman J, Regev A, Koller D. Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network. Nature Biotechnology. 26: 1251-9. PMID 18953355 DOI: 10.1038/nbt.1499  0.56
2008 Jeddeloh JA, Greally JM, Rando OJ. Reduced-representation methylation mapping. Genome Biology. 9: 231. PMID 18771577 DOI: 10.1186/gb-2008-9-8-231  0.56
2008 Au WC, Crisp MJ, DeLuca SZ, Rando OJ, Basrai MA. Altered dosage and mislocalization of histone H3 and Cse4p lead to chromosome loss in Saccharomyces cerevisiae. Genetics. 179: 263-75. PMID 18458100 DOI: 10.1534/genetics.108.088518  0.56
2008 Raisner RM, Hartley PD, Meneghini MD, Bao MZ, Liu CL, Schreiber SL, Rando OJ, Madhani HD. Histone Variant H2A.Z Marks the 5′ Ends of Both Active and Inactive Genes in Euchromatin (DOI:10.1016/j.cell.2005.10.002) Cell. 134: 188. DOI: 10.1016/j.cell.2008.06.046  0.56
2007 Whitehouse I, Rando OJ, Delrow J, Tsukiyama T. Chromatin remodelling at promoters suppresses antisense transcription. Nature. 450: 1031-5. PMID 18075583 DOI: 10.1038/nature06391  0.56
2007 Dennis JH, Fan HY, Reynolds SM, Yuan G, Meldrim JC, Richter DJ, Peterson DG, Rando OJ, Noble WS, Kingston RE. Independent and complementary methods for large-scale structural analysis of mammalian chromatin. Genome Research. 17: 928-39. PMID 17568008 DOI: 10.1101/gr.5636607  0.56
2007 Rando OJ, Ahmad K. Rules and regulation in the primary structure of chromatin. Current Opinion in Cell Biology. 19: 250-6. PMID 17466507 DOI: 10.1016/j.ceb.2007.04.006  0.56
2007 Dion MF, Kaplan T, Kim M, Buratowski S, Friedman N, Rando OJ. Dynamics of replication-independent histone turnover in budding yeast. Science (New York, N.Y.). 315: 1405-8. PMID 17347438 DOI: 10.1126/science.1134053  0.56
2007 Rando OJ, Verstrepen KJ. Timescales of genetic and epigenetic inheritance. Cell. 128: 655-68. PMID 17320504 DOI: 10.1016/j.cell.2007.01.023  0.56
2007 Rando OJ. Global patterns of histone modifications. Current Opinion in Genetics & Development. 17: 94-9. PMID 17317148 DOI: 10.1016/j.gde.2007.02.006  0.56
2007 Rando OJ. Chromatin structure in the genomics era. Trends in Genetics : Tig. 23: 67-73. PMID 17188397 DOI: 10.1016/j.tig.2006.12.002  0.56
2006 Kim M, Vasiljeva L, Rando OJ, Zhelkovsky A, Moore C, Buratowski S. Distinct pathways for snoRNA and mRNA termination. Molecular Cell. 24: 723-34. PMID 17157255 DOI: 10.1016/j.molcel.2006.11.011  0.56
2006 Rando OJ, Paulsson J. Noisy silencing of chromatin. Developmental Cell. 11: 134-6. PMID 16890152 DOI: 10.1016/j.devcel.2006.07.012  0.56
2005 Raisner RM, Hartley PD, Meneghini MD, Bao MZ, Liu CL, Schreiber SL, Rando OJ, Madhani HD. Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin. Cell. 123: 233-48. PMID 16239142 DOI: 10.1016/j.cell.2005.10.002  0.56
2005 Liu CL, Kaplan T, Kim M, Buratowski S, Schreiber SL, Friedman N, Rando OJ. Single-nucleosome mapping of histone modifications in S. cerevisiae. Plos Biology. 3: e328. PMID 16122352 DOI: 10.1371/journal.pbio.0030328  0.56
2005 Yuan GC, Liu YJ, Dion MF, Slack MD, Wu LF, Altschuler SJ, Rando OJ. Genome-scale identification of nucleosome positions in S. cerevisiae. Science (New York, N.Y.). 309: 626-30. PMID 15961632 DOI: 10.1126/science.1112178  0.56
2005 Casolari JM, Brown CR, Drubin DA, Rando OJ, Silver PA. Developmentally induced changes in transcriptional program alter spatial organization across chromosomes. Genes & Development. 19: 1188-98. PMID 15905407 DOI: 10.1101/gad.1307205  0.56
2005 Dion MF, Altschuler SJ, Wu LF, Rando OJ. Genomic characterization reveals a simple histone H4 acetylation code. Proceedings of the National Academy of Sciences of the United States of America. 102: 5501-6. PMID 15795371 DOI: 10.1073/pnas.0500136102  0.56
2004 Kim M, Krogan NJ, Vasiljeva L, Rando OJ, Nedea E, Greenblatt JF, Buratowski S. The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II. Nature. 432: 517-22. PMID 15565157 DOI: 10.1038/nature03041  0.56
2003 Rando OJ, Chi TH, Crabtree GR. Second messenger control of chromatin remodeling. Nature Structural Biology. 10: 81-3. PMID 12555081 DOI: 10.1038/nsb0203-81  0.56
2002 Diehn M, Alizadeh AA, Rando OJ, Liu CL, Stankunas K, Botstein D, Crabtree GR, Brown PO. Genomic expression programs and the integration of the CD28 costimulatory signal in T cell activation. Proceedings of the National Academy of Sciences of the United States of America. 99: 11796-801. PMID 12195013 DOI: 10.1073/pnas.092284399  0.56
2002 Rando OJ, Zhao K, Janmey P, Crabtree GR. Phosphatidylinositol-dependent actin filament binding by the SWI/SNF-like BAF chromatin remodeling complex. Proceedings of the National Academy of Sciences of the United States of America. 99: 2824-9. PMID 11880634 DOI: 10.1073/pnas.032662899  0.56
2000 Rando OJ, Zhao K, Crabtree GR. Searching for a function for nuclear actin. Trends in Cell Biology. 10: 92-7. PMID 10675902 DOI: 10.1016/S0962-8924(99)01713-4  0.56
1998 Zhao K, Wang W, Rando OJ, Xue Y, Swiderek K, Kuo A, Crabtree GR. Rapid and phosphoinositol-dependent binding of the SWI/SNF-like BAF complex to chromatin after T lymphocyte receptor signaling. Cell. 95: 625-36. PMID 9845365  0.56
1994 Palombella VJ, Rando OJ, Goldberg AL, Maniatis T. The ubiquitinproteasome pathway is required for processing the NF-κB1 precursor protein and the activation of NF-κB Cell. 78: 773-785. PMID 8087845 DOI: 10.1016/S0092-8674(94)90482-0  0.56
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