Barbara J. Wold - Publications

California Institute of Technology, Pasadena, CA 

118 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, ... ... Wold B, et al. Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature. 583: 699-710. PMID 32728249 DOI: 10.1038/S41586-020-2493-4  0.6
2020 He P, Williams BA, Trout D, Marinov GK, Amrhein H, Berghella L, Goh ST, Plajzer-Frick I, Afzal V, Pennacchio LA, Dickel DE, Visel A, Ren B, Hardison RC, Zhang Y, ... Wold BJ, et al. The changing mouse embryo transcriptome at whole tissue and single-cell resolution. Nature. 583: 760-767. PMID 32728245 DOI: 10.1038/S41586-020-2536-X  0.52
2020 Partridge EC, Chhetri SB, Prokop JW, Ramaker RC, Jansen CS, Goh ST, Mackiewicz M, Newberry KM, Brandsmeier LA, Meadows SK, Messer CL, Hardigan AA, Coppola CJ, Dean EC, Jiang S, ... ... Wold BJ, et al. Occupancy maps of 208 chromatin-associated proteins in one human cell type. Nature. 583: 720-728. PMID 32728244 DOI: 10.1038/S41586-020-2023-4  0.6
2020 Ramaker RC, Hardigan AA, Goh ST, Partridge EC, Wold B, Cooper SJ, Myers RM. Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations. Genome Research. PMID 32616518 DOI: 10.1101/Gr.260463.119  0.44
2019 Rahmanian S, Murad R, Breschi A, Zeng W, Mackiewicz M, Williams B, Davis CA, Roberts B, Meadows S, Moore D, Trout D, Zaleski C, Dobin A, Sei LH, Drenkow J, ... ... Wold BJ, et al. Dynamics of microRNA expression during mouse prenatal development. Genome Research. PMID 31645363 DOI: 10.1101/Gr.248997.119  0.6
2019 Zhou W, Yui MA, Williams BA, Yun J, Wold BJ, Cai L, Rothenberg EV. Single-Cell Analysis Reveals Regulatory Gene Expression Dynamics Leading to Lineage Commitment in Early T Cell Development. Cell Systems. PMID 31629685 DOI: 10.1016/J.Cels.2019.09.008  0.64
2019 Wyman D, Balderrama-Gutierrez G, Reese F, Jiang S, Rahmanian S, Zeng W, Williams B, Trout D, England W, Chu S, Spitale RC, Tenner A, Wold B, Mortazavi A. A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification F1000research. 8. DOI: 10.7490/F1000Research.1117633.1  0.6
2018 Angeles-Albores D, Puckett Robinson C, Williams BA, Wold BJ, Sternberg PW. Reconstructing a metazoan genetic pathway with transcriptome-wide epistasis measurements. Proceedings of the National Academy of Sciences of the United States of America. PMID 29531064 DOI: 10.1073/Pnas.1712387115  0.52
2017 Regev A, Teichmann SA, Lander ES, Amit I, Benoist C, Birney E, Bodenmiller B, Campbell P, Carninci P, Clatworthy M, Clevers H, Deplancke B, Dunham I, Eberwine J, Eils R, ... ... Wold B, et al. Author response: The Human Cell Atlas Elife. DOI: 10.7554/Elife.27041.011  0.44
2016 Choi HM, Calvert CR, Husain N, Huss D, Barsi JC, Deverman BE, Hunter RC, Kato M, Lee SM, Abelin AC, Rosenthal AZ, Akbari OS, Li Y, Hay BA, Sternberg PW, ... ... Wold B, et al. Mapping a multiplexed zoo of mRNA expression. Development (Cambridge, England). 143: 3632-3637. PMID 27702788 DOI: 10.1242/Dev.140137  0.96
2015 Paten B, Diekhans M, Druker BJ, Friend S, Guinney J, Gassner N, Guttman M, James Kent W, Mantey P, Margolin AA, Massie M, Novak AM, Nothaft F, Pachter L, Patterson D, ... ... Wold B, et al. The NIH BD2K center for big data in translational genomics. Journal of the American Medical Informatics Association : Jamia. PMID 26174866 DOI: 10.1093/Jamia/Ocv047  0.44
2015 Marinov GK, Wang J, Handler D, Wold BJ, Weng Z, Hannon GJ, Aravin AA, Zamore PD, Brennecke J, Toth KF. Pitfalls of mapping high-throughput sequencing data to repetitive sequences: Piwi's genomic targets still not identified. Developmental Cell. 32: 765-71. PMID 25805138 DOI: 10.1016/J.Devcel.2015.01.013  1
2015 Kim DH, Marinov GK, Pepke S, Singer ZS, He P, Williams B, Schroth GP, Elowitz MB, Wold BJ. Single-cell transcriptome analysis reveals dynamic changes in lncRNA expression during reprogramming. Cell Stem Cell. 16: 88-101. PMID 25575081 DOI: 10.1016/J.Stem.2014.11.005  0.44
2014 Abelin AC, Marinov GK, Williams BA, McCue K, Wold BJ. A ratiometric-based measure of gene co-expression. Bmc Bioinformatics. 15: 331. PMID 25411051 DOI: 10.1186/1471-2105-15-331  0.44
2014 Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, et al. Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease. Proceedings of the National Academy of Sciences of the United States of America. 111: E3366. PMID 25275169 DOI: 10.1073/Pnas.1410434111  1
2014 Gasper WC, Marinov GK, Pauli-Behn F, Scott MT, Newberry K, DeSalvo G, Ou S, Myers RM, Vielmetter J, Wold BJ. Fully automated high-throughput chromatin immunoprecipitation for ChIP-seq: identifying ChIP-quality p300 monoclonal antibodies. Scientific Reports. 4: 5152. PMID 24919486 DOI: 10.1038/Srep05152  0.44
2014 Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, et al. Defining functional DNA elements in the human genome. Proceedings of the National Academy of Sciences of the United States of America. 111: 6131-8. PMID 24753594 DOI: 10.1073/Pnas.1318948111  1
2014 Marinov GK, Wang YE, Chan D, Wold BJ. Evidence for site-specific occupancy of the mitochondrial genome by nuclear transcription factors. Plos One. 9: e84713. PMID 24465428 DOI: 10.1371/Journal.Pone.0084713  0.44
2014 Marinov GK, Kundaje A, Park PJ, Wold BJ. Large-scale quality analysis of published ChIP-seq data. G3 (Bethesda, Md.). 4: 209-23. PMID 24347632 DOI: 10.1534/G3.113.008680  1
2014 Marinov GK, Williams BA, McCue K, Schroth GP, Gertz J, Myers RM, Wold BJ. From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing. Genome Research. 24: 496-510. PMID 24299736 DOI: 10.1101/Gr.161034.113  0.44
2013 Steijger T, Abril JF, Engström PG, Kokocinski F, Hubbard TJ, Guigó R, Harrow J, Bertone P. Assessment of transcript reconstruction methods for RNA-seq. Nature Methods. 10: 1177-84. PMID 24185837 DOI: 10.1038/Nmeth.2714  1
2013 Mortazavi A, Pepke S, Jansen C, Marinov GK, Ernst J, Kellis M, Hardison RC, Myers RM, Wold BJ. Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps. Genome Research. 23: 2136-48. PMID 24170599 DOI: 10.1101/Gr.158261.113  0.44
2013 Wang YE, Marinov GK, Wold BJ, Chan DC. Genome-wide analysis reveals coating of the mitochondrial genome by TFAM. Plos One. 8: e74513. PMID 23991223 DOI: 10.1371/Journal.Pone.0074513  0.44
2013 Henley BM, Williams BA, Srinivasan R, Cohen BN, Xiao C, Mackey ED, Wold BJ, Lester HA. Transcriptional regulation by nicotine in dopaminergic neurons. Biochemical Pharmacology. 86: 1074-83. PMID 23939186 DOI: 10.1016/J.Bcp.2013.07.031  0.44
2013 Varley KE, Gertz J, Bowling KM, Parker SL, Reddy TE, Pauli-Behn F, Cross MK, Williams BA, Stamatoyannopoulos JA, Crawford GE, Absher DM, Wold BJ, Myers RM. Dynamic DNA methylation across diverse human cell lines and tissues. Genome Research. 23: 555-67. PMID 23325432 DOI: 10.1101/Gr.147942.112  1
2012 Raskatov JA, Nickols NG, Hargrove AE, Marinov GK, Wold B, Dervan PB. Gene expression changes in a tumor xenograft by a pyrrole-imidazole polyamide. Proceedings of the National Academy of Sciences of the United States of America. 109: 16041-5. PMID 22988074 DOI: 10.1073/Pnas.1214267109  1
2012 Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, Bernstein BE, Bickel P, Brown JB, Cayting P, Chen Y, DeSalvo G, Epstein C, Fisher-Aylor KI, Euskirchen G, ... ... Wold BJ, et al. ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Research. 22: 1813-31. PMID 22955991 DOI: 10.1101/Gr.136184.111  0.44
2012 Park E, Williams B, Wold BJ, Mortazavi A. RNA editing in the human ENCODE RNA-seq data. Genome Research. 22: 1626-33. PMID 22955975 DOI: 10.1101/Gr.134957.111  1
2012 Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, Schlesinger F, Xue C, Marinov GK, Khatun J, Williams BA, Zaleski C, ... ... Wold B, et al. Landscape of transcription in human cells. Nature. 489: 101-8. PMID 22955620 DOI: 10.1038/Nature11233  1
2012 Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R, Canfield T, Giste E, Johnson A, Zhang M, Balasundaram G, ... ... Wold BJ, et al. An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome Biology. 13: 418. PMID 22889292 DOI: 10.1186/Gb-2012-13-8-418  0.44
2012 Kuntz SG, Williams BA, Sternberg PW, Wold BJ. Transcription factor redundancy and tissue-specific regulation: evidence from functional and physical network connectivity. Genome Research. 22: 1907-19. PMID 22730465 DOI: 10.1101/Gr.133306.111  0.52
2012 Chen Y, Negre N, Li Q, Mieczkowska JO, Slattery M, Liu T, Zhang Y, Kim TK, He HH, Zieba J, Ruan Y, Bickel PJ, Myers RM, Wold BJ, White KP, et al. Systematic evaluation of factors influencing ChIP-seq fidelity. Nature Methods. 9: 609-14. PMID 22522655 DOI: 10.1038/Nmeth.1985  1
2012 Zhang JA, Mortazavi A, Williams BA, Wold BJ, Rothenberg EV. Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity. Cell. 149: 467-82. PMID 22500808 DOI: 10.1016/J.Cell.2012.01.056  0.64
2012 Tetreault NA, Hakeem AY, Jiang S, Williams BA, Allman E, Wold BJ, Allman JM. Microglia in the cerebral cortex in autism. Journal of Autism and Developmental Disorders. 42: 2569-84. PMID 22466688 DOI: 10.1007/S10803-012-1513-0  1
2012 Reddy TE, Gertz J, Pauli F, Kucera KS, Varley KE, Newberry KM, Marinov GK, Mortazavi A, Williams BA, Song L, Crawford GE, Wold B, Willard HF, Myers RM. Effects of sequence variation on differential allelic transcription factor occupancy and gene expression. Genome Research. 22: 860-9. PMID 22300769 DOI: 10.1101/Gr.131201.111  1
2012 Li G, Ruan X, Auerbach RK, Sandhu KS, Zheng M, Wang P, Poh HM, Goh Y, Lim J, Zhang J, Sim HS, Peh SQ, Mulawadi FH, Ong CT, Orlov YL, ... ... Wold B, et al. Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation. Cell. 148: 84-98. PMID 22265404 DOI: 10.1016/J.Cell.2011.12.014  1
2012 Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R, Canfield T, Giste E, Johnson A, Zhang M, Balasundaram G, Byron R, ... ... Wold BJ, et al. An encyclopedia of mouse DNA elements (Mouse ENCODE) Genome Biology. 418. DOI: 10.1186/gb4035  1
2011 Tai PW, Fisher-Aylor KI, Himeda CL, Smith CL, Mackenzie AP, Helterline DL, Angello JC, Welikson RE, Wold BJ, Hauschka SD. Differentiation and fiber type-specific activity of a muscle creatine kinase intronic enhancer. Skeletal Muscle. 1: 25. PMID 21797989 DOI: 10.1186/2044-5040-1-25  0.44
2011 . A user's guide to the encyclopedia of DNA elements (ENCODE). Plos Biology. 9: e1001046. PMID 21526222 DOI: 10.1371/Journal.Pbio.1001046  0.44
2011 Budd ME, Antoshechkin IA, Reis C, Wold BJ, Campbell JL. Inviability of a DNA2 deletion mutant is due to the DNA damage checkpoint. Cell Cycle (Georgetown, Tex.). 10: 1690-8. PMID 21508669 DOI: 10.4161/Cc.10.10.15643  1
2011 Ozdemir A, Fisher-Aylor KI, Pepke S, Samanta M, Dunipace L, McCue K, Zeng L, Ogawa N, Wold BJ, Stathopoulos A. High resolution mapping of Twist to DNA in Drosophila embryos: Efficient functional analysis and evolutionary conservation. Genome Research. 21: 566-77. PMID 21383317 DOI: 10.1101/Gr.104018.109  0.44
2010 Mortazavi A, Schwarz EM, Williams B, Schaeffer L, Antoshechkin I, Wold BJ, Sternberg PW. Scaffolding a Caenorhabditis nematode genome with RNA-seq. Genome Research. 20: 1740-7. PMID 20980554 DOI: 10.1101/Gr.111021.110  0.6
2010 Compani B, Su T, Chang I, Cheng J, Shah KH, Whisenant T, Dou Y, Bergmann A, Cheong R, Wold B, Bardwell L, Levchenko A, Baldi P, Mjolsness E. A scalable and integrative system for pathway bioinformatics and systems biology. Advances in Experimental Medicine and Biology. 680: 523-34. PMID 20865537 DOI: 10.1007/978-1-4419-5913-3_58  0.44
2010 Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nature Biotechnology. 28: 511-5. PMID 20436464 DOI: 10.1038/Nbt.1621  1
2010 Abril J, Kokocinski F, Steijger T, Williams G, Salmon M, Mortazavi A, Raetsch G, Gerstein M, Reymond A, Gingeras T, Wold B, Guigó R, Hubbard T, Harrow J. RGASP: assessment of gene-finding tools in the high-throughput era F1000research. 1. DOI: 10.7490/F1000Research.272.1  0.6
2009 Pepke S, Wold B, Mortazavi A. Computation for ChIP-seq and RNA-seq studies Nature Methods. 6: S22-32. PMID 19844228 DOI: 10.1038/Nmeth.1371  1
2008 Kuntz SG, Schwarz EM, DeModena JA, De Buysscher T, Trout D, Shizuya H, Sternberg PW, Wold BJ. Multigenome DNA sequence conservation identifies Hox cis-regulatory elements. Genome Research. 18: 1955-68. PMID 18981268 DOI: 10.1101/Gr.085472.108  0.44
2008 Berghella L, De Angelis L, De Buysscher T, Mortazavi A, Biressi S, Forcales SV, Sirabella D, Cossu G, Wold BJ. A highly conserved molecular switch binds MSY-3 to regulate myogenin repression in postnatal muscle. Genes & Development. 22: 2125-38. PMID 18676817 DOI: 10.1101/Gad.468508  1
2008 Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nature Methods. 5: 621-8. PMID 18516045 DOI: 10.1038/Nmeth.1226  0.6
2007 Johnson DS, Mortazavi A, Myers RM, Wold B. Genome-wide mapping of in vivo protein-DNA interactions. Science (New York, N.Y.). 316: 1497-502. PMID 17540862 DOI: 10.1126/Science.1141319  0.6
2006 Hart CE, Mjolsness E, Wold BJ. Connectivity in the yeast cell cycle transcription network: inferences from neural networks. Plos Computational Biology. 2: e169. PMID 17194216 DOI: 10.1371/Journal.Pcbi.0020169  0.44
2006 Mortazavi A, Leeper Thompson EC, Garcia ST, Myers RM, Wold B. Comparative genomics modeling of the NRSF/REST repressor network: from single conserved sites to genome-wide repertoire. Genome Research. 16: 1208-21. PMID 16963704 DOI: 10.1101/Gr.4997306  0.6
2006 Williams BA, Gwirtz RM, Wold BJ. Genomic DNA as a general cohybridization standard for ratiometric microarrays. Methods in Enzymology. 410: 237-79. PMID 16938555 DOI: 10.1016/S0076-6879(06)10012-9  1
2006 Teal TK, Lies DP, Wold BJ, Newman DK. Spatiometabolic stratification of Shewanella oneidensis biofilms. Applied and Environmental Microbiology. 72: 7324-30. PMID 16936048 DOI: 10.1128/Aem.01163-06  1
2006 Liu J, Williams BA, Gwirtz RM, Wold BJ, Quake S. Enhanced signals and fast nucleic acid hybridization by microfluidic chaotic mixing. Angewandte Chemie (International Ed. in English). 45: 3618-23. PMID 16639763 DOI: 10.1002/Anie.200503830  1
2006 Roden JC, King BW, Trout D, Mortazavi A, Wold BJ, Hart CE. Mining gene expression data by interpreting principal components. Bmc Bioinformatics. 7: 194. PMID 16600052 DOI: 10.1186/1471-2105-7-194  0.44
2005 Hart CE, Sharenbroich L, Bornstein BJ, Trout D, King B, Mjolsness E, Wold BJ. A mathematical and computational framework for quantitative comparison and integration of large-scale gene expression data. Nucleic Acids Research. 33: 2580-94. PMID 15886390 DOI: 10.1093/Nar/Gki536  0.44
2005 Li L, Roden J, Shapiro BE, Wold BJ, Bhatia S, Forman SJ, Bhatia R. Reproducibility, fidelity, and discriminant validity of mRNA amplification for microarray analysis from primary hematopoietic cells. The Journal of Molecular Diagnostics : Jmd. 7: 48-56. PMID 15681474 DOI: 10.1016/S1525-1578(10)60008-6  1
2004 Williams BA, Gwirtz RM, Wold BJ. Genomic DNA as a cohybridization standard for mammalian microarray measurements. Nucleic Acids Research. 32: e81. PMID 15190126 DOI: 10.1093/Nar/Gnh078  1
2004 Graumann J, Dunipace LA, Seol JH, McDonald WH, Yates JR, Wold BJ, Deshaies RJ. Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast. Molecular & Cellular Proteomics : McP. 3: 226-37. PMID 14660704 DOI: 10.1074/Mcp.M300099-Mcp200  1
2003 Thompson HG, Harris JW, Wold BJ, Lin F, Brody JP. p62 overexpression in breast tumors and regulation by prostate-derived Ets factor in breast cancer cells. Oncogene. 22: 2322-33. PMID 12700667 DOI: 10.1038/Sj.Onc.1206325  1
2003 Shapiro BE, Levchenko A, Meyerowitz EM, Wold BJ, Mjolsness ED. Cellerator: extending a computer algebra system to include biochemical arrows for signal transduction simulations. Bioinformatics (Oxford, England). 19: 677-8. PMID 12651737 DOI: 10.1093/Bioinformatics/Btg042  0.44
2003 Wang R, Scharenbroich L, Hart C, Wold B, Mjolsness E. Clustering analysis of microarray gene expression data by splitting algorithm Journal of Parallel and Distributed Computing. 63: 692-706. DOI: 10.1016/S0743-7315(03)00085-6  0.44
2002 Thompson HG, Harris JW, Wold BJ, Quake SR, Brody JP. Identification and confirmation of a module of coexpressed genes. Genome Research. 12: 1517-22. PMID 12368243 DOI: 10.1101/Gr.418402  1
2002 Brody JP, Williams BA, Wold BJ, Quake SR. Significance and statistical errors in the analysis of DNA microarray data. Proceedings of the National Academy of Sciences of the United States of America. 99: 12975-8. PMID 12235357 DOI: 10.1073/Pnas.162468199  1
2002 Brown CT, Rust AG, Clarke PJ, Pan Z, Schilstra MJ, De Buysscher T, Griffin G, Wold BJ, Cameron RA, Davidson EH, Bolouri H. New computational approaches for analysis of cis-regulatory networks. Developmental Biology. 246: 86-102. PMID 12027436 DOI: 10.1006/Dbio.2002.0619  1
2001 Mueller PR, Wold B, Garrity PA. Ligation-mediated PCR for genomic sequencing and footprinting. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 15.3. PMID 18265117 DOI: 10.1002/0471142727.Mb1503S56  1
2001 Csete M, Walikonis J, Slawny N, Wei Y, Korsnes S, Doyle JC, Wold B. Oxygen-mediated regulation of skeletal muscle satellite cell proliferation and adipogenesis in culture Journal of Cellular Physiology. 189: 189-196. PMID 11598904 DOI: 10.1002/Jcp.10016  1
2001 Roberts RJ, Varmus HE, Ashburner M, Brown PO, Eisen MB, Khosla C, Kirschner M, Nusse R, Scott M, Wold B. Information access. Building a "GenBank" of the published literature. Science (New York, N.Y.). 291: 2318-9. PMID 11269300 DOI: 10.1126/Science.1060273  1
2000 Jeong Kyo Yoon, Wold B. The bHLH regulator pMesogenin1 is required for maturation and segmentation of paraxial mesoderm Genes and Development. 14: 3204-3214. PMID 11124811 DOI: 10.1101/Gad.850000  1
2000 Studer L, Csete M, Lee SH, Kabbani N, Walikonis J, Wold B, McKay R. Enhanced proliferation, survival, and dopaminergic differentiation of CNS precursors in lowered oxygen. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 20: 7377-83. PMID 11007896 DOI: 10.1523/Jneurosci.20-19-07377.2000  1
2000 Morrison SJ, Csete M, Groves AK, Melega W, Wold B, Anderson DJ. Culture in reduced levels of oxygen promotes clonogenic sympathoadrenal differentiation by isolated neural crest stem cells. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 20: 7370-6. PMID 11007895  1
2000 Cornelison DD, Olwin BB, Rudnicki MA, Wold BJ. MyoD(-/-) satellite cells in single-fiber culture are differentiation defective and MRF4 deficient. Developmental Biology. 224: 122-37. PMID 10926754 DOI: 10.1006/Dbio.2000.9682  1
2000 Yoon JK, Moon RT, Wold B. The bHLH class protein pMesogeninl can specify paraxial mesoderm phenotypes Developmental Biology. 222: 376-391. PMID 10837126 DOI: 10.1006/Dbio.2000.9717  1
1998 Zabludoff SD, Csete M, Wagner R, Yu X, Wold BJ. p27Kip1 is expressed transiently in developing myotomes and enhances myogenesis. Cell Growth & Differentiation : the Molecular Biology Journal of the American Association For Cancer Research. 9: 1-11. PMID 9438383  1
1997 Cornelison DD, Wold BJ. Single-cell analysis of regulatory gene expression in quiescent and activated mouse skeletal muscle satellite cells. Developmental Biology. 191: 270-83. PMID 9398440 DOI: 10.1006/Dbio.1997.8721  1
1997 Yoon JK, Olson EN, Arnold HH, Wold BJ. Different MRF4 knockout alleles differentially disrupt Myf-5 expression: cis-regulatory interactions at the MRF4/Myf-5 locus. Developmental Biology. 188: 349-62. PMID 9268580 DOI: 10.1006/Dbio.1997.8670  1
1997 Mueller PR, Garrity PA, Wold BJ. Method of preparing nucleic acids having an undefined nucleotide sequence amplification Biotechnology Advances. 15: 726-727.  1
1996 Yun K, Wold B. Skeletal muscle determination and differentiation: Story of a core regulatory network and its context Current Opinion in Cell Biology. 8: 877-889. PMID 8939680 DOI: 10.1016/S0955-0674(96)80091-3  1
1996 Zabludoff SD, Wright WW, Harshman K, Wold BJ. BRCA1 mRNA is expressed highly during meiosis and spermiogenesis but not during mitosis of male germ cells. Oncogene. 13: 649-53. PMID 8760307  1
1996 Olson EN, Arnold HH, Rigby PW, Wold BJ. Know your neighbors: three phenotypes in null mutants of the myogenic bHLH gene MRF4. Cell. 85: 1-4. PMID 8620528 DOI: 10.1016/S0092-8674(00)81073-9  1
1995 Jiang P, Stone S, Wagner R, Wang S, Dayananth P, Kozak CA, Wold B, Kamb A. Comparative analysis of Homo sapiens and Mus musculus cyclin-dependent kinase (CDK) inhibitor genes P16 (MTS1) and P15 (MTS2) Journal of Molecular Evolution. 41: 795-802. PMID 8587124 DOI: 10.1007/Bf00173159  1
1995 Patapoutian A, Wold BJ, Wagner RA. Evidence for developmentally programmed transdifferentiation in mouse esophageal muscle. Science (New York, N.Y.). 270: 1818-21. PMID 8525375 DOI: 10.1126/Science.270.5243.1818  1
1995 Patapoutian A, Yoon JK, Miner JH, Wang S, Stark K, Wold B. Disruption of the mouse MRF4 gene identifies multiple waves of myogenesis in the myotome. Development (Cambridge, England). 121: 3347-58. PMID 7588068  1
1994 Hacia JG, Dervan PB, Wold BJ. Inhibition of Klenow fragment DNA polymerase on double-helical templates by oligonucleotide-directed triple-helix formation. Biochemistry. 33: 6192-200. PMID 8193133 DOI: 10.1021/Bi00186A019  1
1994 Hacia JG, Wold BJ, Dervan PB. Phosphorothioate oligonucleotide-directed triple helix formation. Biochemistry. 33: 5367-9. PMID 8180158 DOI: 10.1021/Bi00184A002  1
1994 Garrity PA, Chen D, Rothenberg EV, Wold BJ. Interleukin-2 transcription is regulated in vivo at the level of coordinated binding of both constitutive and regulated factors. Molecular and Cellular Biology. 14: 2159-69. PMID 8114746 DOI: 10.1128/Mcb.14.3.2159  1
1994 Tavtigian SV, Zabludoff SD, Wold BJ. Cloning of mid-G1 serum response genes and identification of a subset regulated by conditional myc expression. Molecular Biology of the Cell. 5: 375-88. PMID 8049528  1
1993 Patapoutian A, Miner JH, Lyons GE, Wold B. Isolated sequences from the linked Myf-5 and MRF4 genes drive distinct patterns of muscle-specific expression in transgenic mice. Development (Cambridge, England). 118: 61-9. PMID 8375340  1
1993 Neuhold LA, Wold B. HLH forced dimers: Tethering MyoD to E47 generates a dominant positive myogenic factor insulated from negative regulation by Id Cell. 74: 1033-1042. PMID 7691411 DOI: 10.1016/0092-8674(93)90725-6  1
1993 Bond VC, Wold B. Nucleolar localization of myc transcripts Molecular and Cellular Biology. 13: 3221-3230. PMID 7684491 DOI: 10.1128/Mcb.13.6.3221  1
1992 Garrity PA, Wold BJ. Effects of different DNA polymerases in ligation-mediated PCR: enhanced genomic sequencing and in vivo footprinting. Proceedings of the National Academy of Sciences of the United States of America. 89: 1021-5. PMID 1736283 DOI: 10.1073/Pnas.89.3.1021  1
1992 Maher LJ, Dervan PB, Wold B. Analysis of promoter-specific repression by triple-helical DNA complexes in a eukaryotic cell-free transcription system. Biochemistry. 31: 70-81. PMID 1731886 DOI: 10.1021/Bi00116A012  1
1992 Miner JH, Miller JB, Wold BJ. Skeletal muscle phenotypes initiated by ectopic MyoD in transgenic mouse heart. Development (Cambridge, England). 114: 853-60. PMID 1618148  1
1992 Wigler M, Sweet R, Sim GK, Wold B, Pellicer A, Lacy E, Maniatis T, Silverstein S, Axel R. Transformation of mammalian cells with genes from prokaryotes and eukaryotes. 1979. Biotechnology (Reading, Mass.). 24: 444-52. PMID 1422052  1
1991 Miner JH, Wold BJ. c-myc inhibition of MyoD and myogenin-initiated myogenic differentiation. Molecular and Cellular Biology. 11: 2842-51. PMID 1850105 DOI: 10.1128/Mcb.11.5.2842  1
1991 Maher LJ, Wold B, Dervan PB. Oligonucleotide-directed DNA triple-helix formation: an approach to artificial repressors? Antisense Research and Development. 1: 277-81. PMID 1821648 DOI: 10.1089/Ard.1991.1.277  1
1991 Mueller PR, Wold B. Ligation-mediated PCR: Applications to genomic footprinting Methods. 2: 20-31. DOI: 10.1016/S1046-2023(05)80122-7  1
1990 Miner JH, Wold B. Herculin, a fourth member of the MyoD family of myogenic regulatory genes Proceedings of the National Academy of Sciences of the United States of America. 87: 1089-1093. PMID 2300571 DOI: 10.1073/Pnas.87.3.1089  1
1990 Maher LJ, Dervan PB, Wold BJ. Kinetic analysis of oligodeoxyribonucleotide-directed triple-helix formation on DNA. Biochemistry. 29: 8820-6. PMID 2271558 DOI: 10.1021/Bi00489A045  1
1990 Garrity PA, Wold BJ. Tissue-specific expression from a compound TATA-dependent and TATA-independent promoter. Molecular and Cellular Biology. 10: 5646-54. PMID 2233709 DOI: 10.1128/Mcb.10.11.5646  1
1989 Pfeifer GP, Steigerwald SD, Mueller PR, Wold B, Riggs AD. Genomic sequencing and methylation analysis by ligation mediated PCR Science. 246: 810-813. PMID 2814502 DOI: 10.1126/Science.2814502  1
1989 Mueller PR, Wold B. In vivo footprinting of a muscle specific enhancer by ligation mediated PCR Science. 246: 780-786. PMID 2814500 DOI: 10.1126/Science.2814500  1
1989 Johnson JE, Wold BJ, Hauschka SD. Muscle creatine kinase sequence elements regulating skeletal and cardiac muscle expression in transgenic mice. Molecular and Cellular Biology. 9: 3393-9. PMID 2796990 DOI: 10.1128/Mcb.9.8.3393  1
1989 Maher LJ, Wold B, Dervan PB. Inhibition of DNA binding proteins by oligonucleotide-directed triple helix formation. Science (New York, N.Y.). 245: 725-30. PMID 2549631 DOI: 10.1126/Science.2549631  1
1988 Mueller PR, Salser SJ, Wold B. Constitutive and metal-inducible protein:DNA interactions at the mouse metallothionein I promoter examined by in vivo and in vitro footprinting Genes & Development. 2: 412-427. PMID 3371659  1
1988 Preugschat F, Wold B. Isolation and chracterization of a Xenopus laevis C protein cDNA: Structure and expression of a heterogeneous nuclear ribonucleoprotein core protein Proceedings of the National Academy of Sciences of the United States of America. 85: 9669-9673. PMID 2904678 DOI: 10.1073/Pnas.85.24.9669  1
1987 Bond VC, Wold B. Poly-L-ornithine-mediated transformation of mammalian cells Molecular and Cellular Biology. 7: 2286-2293. PMID 3600662 DOI: 10.1128/Mcb.7.6.2286  1
1987 Ngai J, Bond VC, Wold BJ, Lazarides E. Expression of transfected vimentin genes in differentiating murine erythroleukemia cells reveals divergent cis-acting regulation of avian and mammalian vimentin sequences. Molecular and Cellular Biology. 7: 3955-70. PMID 3481037 DOI: 10.1128/Mcb.7.11.3955  1
1986 Nakagawa TY, Swanson MS, Wold BJ, Dreyfuss G. Molecular cloning of cDNA for the nuclear ribonucleoprotein particle C proteins: a conserved gene family. Proceedings of the National Academy of Sciences of the United States of America. 83: 2007-11. PMID 3457372 DOI: 10.1073/Pnas.83.7.2007  1
1985 Moon RT, Ngai J, Wold BJ, Lazarides E. Tissue-specific expression of distinct spectrin and ankyrin transcripts in erythroid and nonerythroid cells. The Journal of Cell Biology. 100: 152-60. PMID 2981230 DOI: 10.1083/Jcb.100.1.152  1
1985 Kim SK, Wold BJ. Stable reduction of thymidine kinase activity in cells expressing high levels of anti-sense RNA. Cell. 42: 129-38. PMID 2410135 DOI: 10.1016/S0092-8674(85)80108-2  1
1980 Pellicer A, Robins D, Wold B, Sweet R, Jackson J, Lowy I, Roberts JM, Sim GK, Silverstein S, Axel R. Altering genotype and phenotype by DNA-mediated gene transfer. Science (New York, N.Y.). 209: 1414-22. PMID 7414320 DOI: 10.1126/Science.7414320  1
1979 Wold B, Wigler M, Lacy E, Maniatis T, Silverstein S, Axel R. Introduction and expression of a rabbit beta-globin gene in mouse fibroblasts. Proceedings of the National Academy of Sciences of the United States of America. 76: 5684-8. PMID 293672 DOI: 10.1073/pnas.76.11.5684  1
1979 Wigler M, Sweet R, Sim GK, Wold B, Pellicer A, Lacy E, Maniatis T, Silverstein S, Axel R. Transformation of mammalian cells with genes from procaryotes and eucaryotes. Cell. 16: 777-85. PMID 222468 DOI: 10.1016/0092-8674(79)90093-X  1
1978 Wold BJ, Klein WH, Hough-Evans BR, Britten RJ, Davidson EH. Sea urchin embryo mRNA sequences expressed in the nuclear RNA of adult tissues. Cell. 14: 941-50. PMID 688400 DOI: 10.1016/0092-8674(78)90348-3  0.96
1977 Hough-Evans BR, Wold BJ, Ernst SG, Britten RJ, Davidson EH. Appearance and persistence of maternal RNA sequences in sea urchin development. Developmental Biology. 60: 258-77. PMID 561725 DOI: 10.1016/0012-1606(77)90123-3  0.96
1976 Galau GA, Klein WH, Davis MM, Wold BJ, Britten RJ, Davidson EH. Structural gene sets active in embryos and adult tissues of the sea urchin. Cell. 7: 487-505. PMID 986248 DOI: 10.1016/0092-8674(76)90200-2  0.96
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