David A. Baker, Ph.D. - Publications

Affiliations: 
Marquette University Marquette University, Milwaukee, WI, United States 

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Year Citation  Score
2021 Braun KM, Moreno GK, Wagner C, Accola MA, Rehrauer WM, Baker DA, Koelle K, O'Connor DH, Bedford T, Friedrich TC, Moncla LH. Acute SARS-CoV-2 infections harbor limited within-host diversity and transmit via tight transmission bottlenecks. Plos Pathogens. 17: e1009849. PMID 34424945 DOI: 10.1371/journal.ppat.1009849  1
2021 Grulich AE, Jin F, Bavinton BR, Yeung B, Hammoud MA, Amin J, Cabrera G, Clackett S, Ogilvie E, Vaccher S, Vickers T, McNulty A, Smith DJ, Dharan NJ, Selvey C, ... Baker DA, et al. Long-term protection from HIV infection with oral HIV pre-exposure prophylaxis in gay and bisexual men: findings from the expanded and extended EPIC-NSW prospective implementation study. The Lancet. Hiv. PMID 34217426 DOI: 10.1016/S2352-3018(21)00074-6  1
2021 Heffron AS, McIlwain SJ, Amjadi MF, Baker DA, Khullar S, Armbrust T, Halfmann PJ, Kawaoka Y, Sethi AK, Palmenberg AC, Shelef MA, O'Connor DH, Ong IM. The landscape of antibody binding in SARS-CoV-2 infection. Plos Biology. 19: e3001265. PMID 34143766 DOI: 10.1371/journal.pbio.3001265  1
2021 Imai M, Halfmann PJ, Yamayoshi S, Iwatsuki-Horimoto K, Chiba S, Watanabe T, Nakajima N, Ito M, Kuroda M, Kiso M, Maemura T, Takahashi K, Loeber S, Hatta M, Koga M, ... Baker DA, et al. Characterization of a new SARS-CoV-2 variant that emerged in Brazil. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34140350 DOI: 10.1073/pnas.2106535118  1
2021 Braun KM, Moreno GK, Buys A, Somsen ED, Bobholz M, Accola MA, Anderson L, Rehrauer WM, Baker DA, Safdar N, Lepak AJ, O'Connor DH, Friedrich TC. Viral sequencing reveals US healthcare personnel rarely become infected with SARS-CoV-2 through patient contact. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 33857303 DOI: 10.1093/cid/ciab281  1
2021 Balestra AC, Koussis K, Klages N, Howell SA, Flynn HR, Bantscheff M, Pasquarello C, Perrin AJ, Brusini L, Arboit P, Sanz O, Castaño LP, Withers-Martinez C, Hainard A, Ghidelli-Disse S, ... Baker DA, et al. Ca signals critical for egress and gametogenesis in malaria parasites depend on a multipass membrane protein that interacts with PKG. Science Advances. 7. PMID 33762339 DOI: 10.1126/sciadv.abe5396  1
2021 Prall TM, Neumann EK, Karl JA, Shortreed CG, Baker DA, Bussan HE, Wiseman RW, O'Connor DH. Consistent ultra-long DNA sequencing with automated slow pipetting. Bmc Genomics. 22: 182. PMID 33711930 DOI: 10.1186/s12864-021-07500-w  1
2021 Perrin AJ, Bisson C, Faull PA, Renshaw MJ, Lees RA, Fleck RA, Saibil HR, Snijders AP, Baker DA, Blackman MJ. Malaria Parasite Schizont Egress Antigen-1 Plays an Essential Role in Nuclear Segregation during Schizogony. Mbio. 12. PMID 33688001 DOI: 10.1128/mBio.03377-20  1
2021 Braun KM, Moreno GK, Halfmann PJ, Hodcroft EB, Baker DA, Boehm EC, Weiler AM, Haj AK, Hatta M, Chiba S, Maemura T, Kawaoka Y, Koelle K, O'Connor DH, Friedrich TC. Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck. Plos Pathogens. 17: e1009373. PMID 33635912 DOI: 10.1371/journal.ppat.1009373  1
2021 Nofal SD, Patel A, Blackman MJ, Flueck C, Baker DA. Guanylyl Cyclase-Alpha and the Activity of Its Appended P4-ATPase Domain Are Essential for cGMP Synthesis and Blood-Stage Egress. Mbio. 12. PMID 33500341 DOI: 10.1128/mBio.02694-20  1
2020 Mohring F, Hart MN, Patel A, Baker DA, Moon RW. CRISPR-Cas9 Genome Editing of . Bio-Protocol. 10: e3522. PMID 33654746 DOI: 10.21769/BioProtoc.3522  1
2020 Baker DA, Matralis AN, Osborne SA, Large JM, Penzo M. Targeting the Malaria Parasite cGMP-Dependent Protein Kinase to Develop New Drugs. Frontiers in Microbiology. 11: 602803. PMID 33391223 DOI: 10.3389/fmicb.2020.602803  1
2020 Braun KM, Moreno GK, Halfmann PJ, Baker DA, Boehm EC, Weiler AM, Haj AK, Hatta M, Chiba S, Maemura T, Kawaoka Y, Koelle K, O'Connor DH, Friedrich TC. Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck. Biorxiv : the Preprint Server For Biology. PMID 33236011 DOI: 10.1101/2020.11.16.384917  1
2020 Heffron AS, McIlwain SJ, Baker DA, Amjadi MF, Khullar S, Sethi AK, Shelef MA, O'Connor DH, Ong IM. The landscape of antibody binding to SARS-CoV-2. Biorxiv : the Preprint Server For Biology. PMID 33052349 DOI: 10.1101/2020.10.10.334292  1
2020 Perrin AJ, Patel A, Flueck C, Blackman MJ, Baker DA. cAMP signalling and its role in host cell invasion by malaria parasites. Current Opinion in Microbiology. 58: 69-74. PMID 33032143 DOI: 10.1016/j.mib.2020.09.003  1
2020 Wang LT, Pereira LS, Flores-Garcia Y, O'Connor J, Flynn BJ, Schön A, Hurlburt NK, Dillon M, Yang ASP, Fabra-García A, Idris AH, Mayer BT, Gerber MW, Gottardo R, Mason RD, ... Baker D, et al. A Potent Anti-Malarial Human Monoclonal Antibody Targets Circumsporozoite Protein Minor Repeats and Neutralizes Sporozoites in the Liver. Immunity. PMID 32946741 DOI: 10.1016/J.Immuni.2020.08.014  1
2020 Farrell DP, Anishchenko I, Shakeel S, Lauko A, Passmore LA, Baker D, DiMaio F. Deep learning enables the atomic structure determination of the Fanconi Anemia core complex from cryoEM. Iucrj. 7: 881-892. PMID 32939280 DOI: 10.1107/S2052252520009306  0.01
2020 Cao L, Goreshnik I, Coventry B, Case JB, Miller L, Kozodoy L, Chen RE, Carter L, Walls AC, Park YJ, Strauch EM, Stewart L, Diamond MS, Veesler D, Baker D. De novo design of picomolar SARS-CoV-2 miniprotein inhibitors. Science (New York, N.Y.). PMID 32907861 DOI: 10.1126/Science.Abd9909  1
2020 Xu C, Lu P, Gamal El-Din TM, Pei XY, Johnson MC, Uyeda A, Bick MJ, Xu Q, Jiang D, Bai H, Reggiano G, Hsia Y, Brunette TJ, Dou J, Ma D, ... Baker D, et al. Computational design of transmembrane pores. Nature. PMID 32848250 DOI: 10.1038/S41586-020-2646-5  1
2020 Basanta B, Bick MJ, Bera AK, Norn C, Chow CM, Carter LP, Goreshnik I, Dimaio F, Baker D. An enumerative algorithm for de novo design of proteins with diverse pocket structures. Proceedings of the National Academy of Sciences of the United States of America. PMID 32839327 DOI: 10.1073/Pnas.2005412117  1
2020 Lajoie MJ, Boyken SE, Salter AI, Bruffey J, Rajan A, Langan RA, Olshefsky A, Muhunthan V, Bick MJ, Gewe M, Quijano-Rubio A, Johnson J, Lenz G, Nguyen A, Pun S, ... Baker D, et al. Designed protein logic to target cells with precise combinations of surface antigens. Science (New York, N.Y.). PMID 32820060 DOI: 10.1126/Science.Aba6527  1
2020 Miao Y, Ha A, de Lau W, Yuki K, Santos AJM, You C, Geurts MH, Puschhof J, Pleguezuelos-Manzano C, Peng WC, Senlice R, Piani C, Buikema JW, Gbenedio OM, Vallon M, ... Baker D, et al. Next-Generation Surrogate Wnts Support Organoid Growth and Deconvolute Frizzled Pleiotropy In Vivo. Cell Stem Cell. PMID 32818433 DOI: 10.1016/J.Stem.2020.07.020  1
2020 Kirkpatrick RL, Lewis K, Langan RA, Lajoie MJ, Boyken SE, Eakman M, Baker D, Zalatan JG. Conditional Recruitment to a DNA-Bound CRISPR-Cas Complex Using a Colocalization-Dependent Protein Switch. Acs Synthetic Biology. PMID 32816470 DOI: 10.1021/Acssynbio.0C00012  1
2020 Antanasijevic A, Ueda G, Brouwer PJM, Copps J, Huang D, Allen JD, Cottrell CA, Yasmeen A, Sewall LM, Bontjer I, Ketas TJ, Turner HL, Berndsen ZT, Montefiori DC, Klasse PJ, ... Baker D, et al. Structural and functional evaluation of de novo-designed, two-component nanoparticle carriers for HIV Env trimer immunogens. Plos Pathogens. 16: e1008665. PMID 32780770 DOI: 10.1371/Journal.Ppat.1008665  1
2020 Ueda G, Antanasijevic A, Fallas JA, Sheffler W, Copps J, Ellis D, Hutchinson GB, Moyer A, Yasmeen A, Tsybovsky Y, Park YJ, Bick MJ, Sankaran B, Gillespie RA, Brouwer PJ, ... Baker D, et al. Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens. Elife. 9. PMID 32748788 DOI: 10.7554/Elife.57659  1
2020 van Wyk J, Orkin C, Rubio R, Bogner J, Baker D, Khuong-Josses MA, Parks D, Angelis K, Kahl LP, Matthews J, Wang R, Underwood M, Wynne B, Nascimento MC, Vandermeulen K, et al. Durable Suppression and Low Rate of Virologic Failure 3 Years After Switch to Dolutegravir + Rilpivirine 2-Drug Regimen: 148-Week Results From the SWORD-1 and -2 Randomized Clinical Trials. Journal of Acquired Immune Deficiency Syndromes (1999). PMID 32675772 DOI: 10.1097/Qai.0000000000002449  1
2020 Ressurreição M, Thomas JA, Nofal SD, Flueck C, Moon RW, Baker DA, van Ooij C. Use of a highly specific kinase inhibitor for rapid, simple and precise synchronization of Plasmodium falciparum and Plasmodium knowlesi asexual blood-stage parasites. Plos One. 15: e0235798. PMID 32673324 DOI: 10.1371/Journal.Pone.0235798  1
2020 Baker D, Roberts CA, Pryce G, Kang AS, Marta M, Reyes S, Schmierer K, Giovannoni G, Amor S. COVID-19 vaccine-readiness for anti-CD20-depleting therapy in autoimmune diseases. Clinical and Experimental Immunology. PMID 32671831 DOI: 10.1111/Cei.13495  1
2020 Baker D, Pryce G, James LK, Marta M, Schmierer K. The ocrelizumab phase II extension trial suggests the potential to improve the risk: Benefit balance in multiple sclerosis. Multiple Sclerosis and Related Disorders. 44: 102279. PMID 32645640 DOI: 10.1016/J.Msard.2020.102279  1
2020 Zhang S, Chen J, Liu J, Pyles H, Baker D, Chen CL, De Yoreo JJ. Engineering Biomolecular Self-Assembly at Solid-Liquid Interfaces. Advanced Materials (Deerfield Beach, Fla.). e1905784. PMID 32627885 DOI: 10.1002/Adma.201905784  1
2020 Petrova N, Nutma E, Carassiti D, Newman J, Amor S, Altmann DR, Baker D, Schmierer K. Synaptic loss in the multiple sclerosis spinal cord. Annals of Neurology. PMID 32608018 DOI: 10.1002/Ana.25835  1
2020 Hosseini-Hooshyar S, Martinello M, Yee J, Read P, Baker D, Post JJ, Finlayson R, Bloch M, Doyle JS, Shaw D, Hellard M, Petoumenos K, Carson J, Dore GJ, Matthews GV, et al. Low hepatitis C virus reinfection rate despite ongoing risk following universal access to direct-acting antiviral therapy among people living with HIV. Aids (London, England). 34: 1347-1358. PMID 32590433 DOI: 10.1097/Qad.0000000000002562  1
2020 Licht-Mayer S, Campbell GR, Canizares M, Mehta AR, Gane AB, McGill K, Ghosh A, Fullerton A, Menezes N, Dean J, Dunham J, Al-Azki S, Pryce G, Zandee S, Zhao C, ... Baker D, et al. Enhanced axonal response of mitochondria to demyelination offers neuroprotection: implications for multiple sclerosis. Acta Neuropathologica. PMID 32572598 DOI: 10.1007/S00401-020-02179-X  1
2020 Marr EJ, Milne RM, Anar B, Girling G, Schwach F, Mooney JP, Nahrendorf W, Spence PJ, Cunningham D, Baker DA, Langhorne J, Rayner JC, Billker O, Bushell ES, Thompson J. An enhanced toolkit for the generation of knockout and marker-free fluorescent . Wellcome Open Research. 5: 71. PMID 32500098 DOI: 10.12688/wellcomeopenres.15587.2  1
2020 Marr EJ, Milne RM, Anar B, Girling G, Schwach F, Mooney JP, Nahrendorf W, Spence PJ, Cunningham D, Baker DA, Langhorne J, Rayner JC, Billker O, Bushell ES, Thompson J. An enhanced toolkit for the generation of knockout and marker-free fluorescent . Wellcome Open Research. 5: 71. PMID 32500098 DOI: 10.12688/wellcomeopenres.15587.2  1
2020 Saxena G, Moore JM, Jones M, Pryce G, Ali L, Leisegang GR, Vijay V, Loveless S, Robertson NP, Schmierer K, Giovannoni G, Gnananpavan S, Baker D, Tallantyre EC, Kang AS. Detecting and predicting neutralization of alemtuzumab responses in MS. Neurology(R) Neuroimmunology & Neuroinflammation. 7. PMID 32499328 DOI: 10.1212/Nxi.0000000000000767  1
2020 Leman JK, Weitzner BD, Lewis SM, Adolf-Bryfogle J, Alam N, Alford RF, Aprahamian M, Baker D, Barlow KA, Barth P, Basanta B, Bender BJ, Blacklock K, Bonet J, Boyken SE, et al. Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nature Methods. PMID 32483333 DOI: 10.1038/S41592-020-0848-2  1
2020 Baker D, Amor S, Kang AS, Schmierer K, Giovannoni G. The underpinning biology relating to multiple sclerosis disease modifying treatments during the COVID-19 pandemic. Multiple Sclerosis and Related Disorders. 43: 102174. PMID 32464584 DOI: 10.1016/J.Msard.2020.102174  1
2020 Mateo-Casas M, Reyes S, O'Toole EA, De Trane S, Yildiz O, Allen-Philbey K, Mathews J, Baker D, Giovannoni G, Schmierer K. Severe skin reactions associated with cladribine in people with multiple sclerosis. Multiple Sclerosis and Related Disorders. 43: 102140. PMID 32454296 DOI: 10.1016/J.Msard.2020.102140  1
2020 Etherington GJ, Heavens D, Baker D, Lister A, McNelly R, Garcia G, Clavijo B, Macaulay I, Haerty W, Di Palma F. Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal. Gigascience. 9. PMID 32396200 DOI: 10.1093/Gigascience/Giaa045  1
2020 Amor S, Baker D, Khoury SJ, Schmierer K, Giovanonni G. SARS-CoV-2 and Multiple Sclerosis: Not All Immune Depleting DMTs are Equal or Bad. Annals of Neurology. 87: 794-797. PMID 32383812 DOI: 10.1002/Ana.25770  1
2020 Kirk JW, Baker DA, Kirk JJ, MacAllister WS. A review of performance and symptom validity testing with pediatric populations. Applied Neuropsychology. Child. 1-15. PMID 32372667 DOI: 10.1080/21622965.2020.1750118  0.01
2020 Koehler Leman J, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, ... Baker D, et al. Better together: Elements of successful scientific software development in a distributed collaborative community. Plos Computational Biology. 16: e1007507. PMID 32365137 DOI: 10.1371/Journal.Pcbi.1007507  1
2020 Sherratt S, Patel A, Baker DA, Riley EM, Goodier MR. Differential IL-18 Dependence of Canonical and Adaptive NK Cells for Antibody Dependent Responses to . Frontiers in Immunology. 11: 533. PMID 32296438 DOI: 10.3389/Fimmu.2020.00533  1
2020 Schmierer K, Baker D. B cells and multiple sclerosis spinal cord pathology. Brain Pathology (Zurich, Switzerland). PMID 32285483 DOI: 10.1111/Bpa.12840  1
2020 Brunette TJ, Bick MJ, Hansen JM, Chow CM, Kollman JM, Baker D. Modular repeat protein sculpting using rigid helical junctions. Proceedings of the National Academy of Sciences of the United States of America. PMID 32245816 DOI: 10.1073/Pnas.1908768117  1
2020 Chen Z, Kibler RD, Hunt A, Busch F, Pearl J, Jia M, VanAernum ZL, Wicky BIM, Dods G, Liao H, Wilken MS, Ciarlo C, Green S, El-Samad H, Stamatoyannopoulos J, ... Baker D, et al. De novo design of protein logic gates. Science (New York, N.Y.). 368: 78-84. PMID 32241946 DOI: 10.1126/Science.Aay2790  1
2020 Bertrand JA, Schicht M, Stamer WD, Baker D, Sherwood JM, Lütjen-Drecoll E, Selwood DL, Overby DR. The β4-Subunit of the Large-Conductance Potassium Ion Channel KCa1.1 Regulates Outflow Facility in Mice. Investigative Ophthalmology & Visual Science. 61: 41. PMID 32203982 DOI: 10.1167/Iovs.61.3.41  1
2020 Wu HQ, Baker D, Ovaa H. Small molecules that target the ubiquitin system. Biochemical Society Transactions. PMID 32196552 DOI: 10.1042/Bst20190535  0.01
2020 Ten Dijke P, Baker D. Controlling Smad4 signaling with a Wip. Embo Reports. e50246. PMID 32189449 DOI: 10.15252/Embr.202050246  1
2020 Wei KY, Moschidi D, Bick MJ, Nerli S, McShan AC, Carter LP, Huang PS, Fletcher DA, Sgourakis NG, Boyken SE, Baker D. Computational design of closely related proteins that adopt two well-defined but structurally divergent folds. Proceedings of the National Academy of Sciences of the United States of America. PMID 32188784 DOI: 10.1073/Pnas.1914808117  1
2020 Koussis K, Withers-Martinez C, Baker DA, Blackman MJ. Simultaneous multiple allelic replacement in the malaria parasite enables dissection of PKG function. Life Science Alliance. 3. PMID 32179592 DOI: 10.26508/lsa.201900626  1
2020 Isaacs-Ten A, Echeandia M, Moreno-Gonzalez M, Brion A, Goldson A, Philo M, Patterson AM, Parker A, Galduroz M, Baker D, Rushbrook SM, Hildebrand F, Beraza N. Intestinal microbiome-macrophage crosstalk contributes to cholestatic liver disease by promoting intestinal permeability. Hepatology (Baltimore, Md.). PMID 32168395 DOI: 10.1002/Hep.31228  0.01
2020 Baker D, Ali L, Saxena G, Pryce G, Jones M, Schmierer K, Giovannoni G, Gnanapavan S, Munger KC, Samkoff L, Goodman A, Kang AS. The Irony of Humanization: Alemtuzumab, the First, But One of the Most Immunogenic, Humanized Monoclonal Antibodies. Frontiers in Immunology. 11: 124. PMID 32117274 DOI: 10.3389/Fimmu.2020.00124  1
2020 Shortreed CG, Wiseman RW, Karl JA, Bussan HE, Baker DA, Prall TM, Haj AK, Moreno GK, Penedo MCT, O'Connor DH. Characterization of 100 extended major histocompatibility complex haplotypes in Indonesian cynomolgus macaques. Immunogenetics. PMID 32112172 DOI: 10.1007/S00251-020-01159-5  1
2020 Henrici RC, Edwards RL, Zoltner M, van Schalkwyk DA, Hart MN, Mohring F, Moon RW, Nofal SD, Patel A, Flueck C, Baker DA, Odom John AR, Field MC, Sutherland CJ. The Artemisinin Susceptibility-Associated AP-2 Adaptin μ Subunit is Clathrin Independent and Essential for Schizont Maturation. Mbio. 11. PMID 32098816 DOI: 10.1128/Mbio.02918-19  1
2020 Ali L, Saxena G, Jones M, Leisegang GR, Gammon L, Gnanapavan S, Giovannoni G, Schmierer K, Baker D, Kang AS. A cell-based assay for the detection of neutralizing antibodies against alemtuzumab. Biotechniques. PMID 32096651 DOI: 10.2144/Btn-2019-0122  1
2020 Ng AH, Nguyen TH, Gómez-Schiavon M, Dods G, Langan RA, Boyken SE, Samson JA, Waldburger LM, Dueber JE, Baker D, El-Samad H. Publisher Correction: Modular and tunable biological feedback control using a de novo protein switch. Nature. PMID 32094663 DOI: 10.1038/S41586-020-2046-X  1
2020 Haj AK, Breitbach ME, Baker DA, Mohns MS, Moreno GK, Wilson NA, Lyamichev V, Patel J, Weisgrau KL, Dudley DM, O'Connor DH. High-Throughput Identification of MHC Class I Binding Peptides Using an Ultradense Peptide Array. Journal of Immunology (Baltimore, Md. : 1950). PMID 32060132 DOI: 10.4049/Jimmunol.1900889  1
2020 Yasir M, Turner AK, Bastkowski S, Baker D, Page AJ, Telatin A, Phan MD, Monahan L, Savva GM, Darling A, Webber MA, Charles IG. TraDIS-Xpress: a high-resolution whole-genome assay identifies novel mechanisms of triclosan action and resistance. Genome Research. PMID 32051187 DOI: 10.1101/Gr.254391.119  0.01
2020 Saxena GK, Theocharopoulos I, Aziz NT, Jones M, Gnanapavan S, Giovannoni G, Schmierer K, Garnett JA, Baker D, Kang AS. GloBody Technology: Detecting Anti-Drug Antibody against VH/VL domains. Scientific Reports. 10: 1860. PMID 32024871 DOI: 10.1038/S41598-020-58041-3  1
2020 VanAernum ZL, Busch F, Jones BJ, Jia M, Chen Z, Boyken SE, Sahasrabuddhe A, Baker D, Wysocki VH. Rapid online buffer exchange for screening of proteins, protein complexes and cell lysates by native mass spectrometry. Nature Protocols. PMID 32005983 DOI: 10.1038/S41596-019-0281-0  1
2020 Hellner B, Alamdari S, Pyles H, Zhang S, Prakash A, Sprenger KG, De Yoreo JJ, Baker D, Pfaendtner J, Baneyx F. Sequence-structure-binding relationships reveal adhesion behavior of the Car9 solid-binding peptide: an integrated experimental and simulation study. Journal of the American Chemical Society. PMID 31934768 DOI: 10.1021/Jacs.9B11617  1
2020 Yang J, Anishchenko I, Park H, Peng Z, Ovchinnikov S, Baker D. Improved protein structure prediction using predicted interresidue orientations. Proceedings of the National Academy of Sciences of the United States of America. PMID 31896580 DOI: 10.1073/Pnas.1914677117  1
2020 Ueda G, Antanasijevic A, Fallas JA, Sheffler W, Copps J, Ellis D, Hutchinson GB, Moyer A, Yasmeen A, Tsybovsky Y, Park Y, Bick MJ, Sankaran B, Gillespie RA, Brouwer PJ, ... Baker D, et al. Author response: Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens Elife. DOI: 10.7554/Elife.57659.Sa2  1
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, Baker D, et al. Members of the RosettaCommons Consortium. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S009  1
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, Baker D, et al. Details of Remaining Collective Challenges. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S008  1
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, Baker D, et al. Commercial spin-off companies from the Rosetta community. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S007  1
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, Baker D, et al. Values Statement: Equality and Inclusion in the RosettaCommons. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S005  1
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, Baker D, et al. Descriptions of the Rosetta board positions. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S004  1
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, Baker D, et al. Typical development workflow in the Rosetta community. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S003  1
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, Baker D, et al. Specific tests for Rosetta running on our automated testing framework. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S002  1
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, Baker D, et al. Growth in Rosetta PIs and conference attendees. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S001  1
2020 Marx SK, Vorobieva A, Chow C, Craig JM, Kim HC, Abell SJ, Huang J, Gerben S, Baker D, Gundlach JH. de novo Design of Ion Conducting Transmembrane Protein Nanopores Biophysical Journal. 118: 483a-484a. DOI: 10.1016/J.Bpj.2019.11.2678  0.01
2020 Davis J, Heiselman C, Peresleni T, Baker D, Garry D. 202: Matrix Metalloproteinases (MMPs) are Potential Markers for Preterm Birth (PTB) American Journal of Obstetrics and Gynecology. 222. DOI: 10.1016/J.Ajog.2019.11.218  1
2019 Carr M, Richardson R, Tong W, Bloch M, Baker D, Hoy JF. Switch from tenofovir DF to raltegravir is not associated with weight gain over 96 weeks. Aids (London, England). PMID 31895147 DOI: 10.1097/Qad.0000000000002473  1
2019 Park J, Selvaraj B, McShan AC, Boyken SE, Wei KY, Oberdorfer G, DeGrado W, Sgourakis NG, Cuneo MJ, Myles DA, Baker D. De novo design of a homo-trimeric amantadine-binding protein. Elife. 8. PMID 31854299 DOI: 10.7554/Elife.47839  1
2019 Cannon KA, Park RU, Boyken SE, Nattermann U, Yi S, Baker D, King NP, Yeates TO. Design and structure of two new protein cages illustrate successes and ongoing challenges in protein engineeringfig. Protein Science : a Publication of the Protein Society. PMID 31840320 DOI: 10.1002/Pro.3802  1
2019 Yin Y, Ochi N, Craven TW, Baker D, Takigawa N, Suga H. De novo carborane-containing macrocyclic peptides targeting human EGFR. Journal of the American Chemical Society. PMID 31752491 DOI: 10.1021/Jacs.9B09106  0.01
2019 Khatib F, Desfosses A, Koepnick B, Flatten J, Popović Z, Baker D, Cooper S, Gutsche I, Horowitz S. Building de novo cryo-electron microscopy structures collaboratively with citizen scientists. Plos Biology. 17: e3000472. PMID 31714936 DOI: 10.1371/Journal.Pbio.3000472  1
2019 Weitzner BD, Kipnis Y, Daniel AG, Hilvert D, Baker D. A computational method for design of connected catalytic networks in proteins. Protein Science : a Publication of the Protein Society. PMID 31642127 DOI: 10.1002/Pro.3757  1
2019 Baker D, Pryce G, James LK, Schmierer K, Giovannoni G. Failed B cell survival factor trials support the importance of memory B cells in multiple sclerosis. European Journal of Neurology. PMID 31617269 DOI: 10.1111/Ene.14105  1
2019 Martinello M, Yee J, Bartlett SR, Read P, Baker D, Post JJ, Finlayson R, Bloch M, Doyle J, Shaw D, Hellard M, Petoumenos K, Lin L, Marks P, Applegate T, et al. Moving towards hepatitis C micro-elimination among people living with HIV in Australia: the CEASE study. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 31585005 DOI: 10.1093/Cid/Ciz985  1
2019 Matralis AN, Malik A, Penzo M, Moreno I, Almela MJ, Camino I, Crespo B, Saadeddin A, Ghidelli-Disse S, Rueda L, Calderon F, Osborne S, Drewes G, Boesche M, Fernandez Alvaro E, ... ... Baker DA, et al. Development of Chemical Entities Endowed with Potent Fast- Killing Properties against Plasmodium falciparum Malaria Parasites. Journal of Medicinal Chemistry. PMID 31566384 DOI: 10.1021/Acs.Jmedchem.9B01099  1
2019 Brouwer PJM, Antanasijevic A, Berndsen Z, Yasmeen A, Fiala B, Bijl TPL, Bontjer I, Bale JB, Sheffler W, Allen JD, Schorcht A, Burger JA, Camacho M, Ellis D, Cottrell CA, ... Baker D, et al. Enhancing and shaping the immunogenicity of native-like HIV-1 envelope trimers with a two-component protein nanoparticle. Nature Communications. 10: 4272. PMID 31537780 DOI: 10.1038/S41467-019-12080-1  1
2019 Foight GW, Wang Z, Wei CT, Jr Greisen P, Warner KM, Cunningham-Bryant D, Park K, Brunette TJ, Sheffler W, Baker D, Maly DJ. Multi-input chemical control of protein dimerization for programming graded cellular responses. Nature Biotechnology. PMID 31501561 DOI: 10.1038/S41587-019-0242-8  1
2019 Large JM, Birchall K, Bouloc NS, Merritt AT, Smiljanic-Hurley E, Tsagris DJ, Wheldon MC, Ansell KH, Coombs PJ, Kettleborough CA, Whalley D, Stewart LB, Bowyer PW, Baker DA, Osborne SA. Potent bicyclic inhibitors of malarial cGMP-dependent protein kinase: approaches to combining improvements in cell potency, selectivity and structural novelty. Bioorganic & Medicinal Chemistry Letters. 126610. PMID 31471167 DOI: 10.1016/J.Bmcl.2019.08.014  1
2019 Porter KA, Padhorny D, Desta I, Ignatov M, Beglov D, Kotelnikov S, Sun Z, Alekseenko A, Anishchenko I, Cong Q, Ovchinnikov S, Baker D, Vajda S, Kozakov D. Template-Based Modeling by ClusPro in CASP13 and the Potential for Using Co-evolutionary Information in Docking. Proteins. PMID 31444975 DOI: 10.1002/Prot.25808  1
2019 Pecora de Barros E, Schiffer JM, Vorobieva A, Dou J, Baker D, Amaro RE. Improving the Efficiency of Ligand-Binding Protein Design with Molecular Dynamics. Journal of Chemical Theory and Computation. PMID 31442033 DOI: 10.1021/Acs.Jctc.9B00483  1
2019 Baker D, Nutma E, O'Shea H, Cooke A, Orian JM, Amor S. Autoimmune encephalomyelitis in NOD mice is not initially a progressive multiple sclerosis model. Annals of Clinical and Translational Neurology. 6: 1362-1372. PMID 31402611 DOI: 10.1002/Acn3.792  1
2019 Langan RA, Boyken SE, Ng AH, Samson JA, Dods G, Westbrook AM, Nguyen TH, Lajoie MJ, Chen Z, Berger S, Mulligan VK, Dueber JE, Novak WRP, El-Samad H, Baker D. De novo design of bioactive protein switches. Nature. PMID 31341284 DOI: 10.1038/S41586-019-1432-8  1
2019 Ng AH, Nguyen TH, Gómez-Schiavon M, Dods G, Langan RA, Boyken SE, Samson JA, Waldburger LM, Dueber JE, Baker D, El-Samad H. Modular and tunable biological feedback control using a de novo protein switch. Nature. PMID 31341280 DOI: 10.1038/S41586-019-1425-7  1
2019 Park H, Lee GR, Kim DE, Anishchanka I, Cong Q, Baker D. High-accuracy refinement using Rosetta in CASP13. Proteins. PMID 31325340 DOI: 10.1002/Prot.25784  1
2019 Camarda G, Jirawatcharadech P, Priestley RS, Saif A, March S, Wong MHL, Leung S, Miller AB, Baker DA, Alano P, Paine MJI, Bhatia SN, O'Neill PM, Ward SA, Biagini GA. Antimalarial activity of primaquine operates via a two-step biochemical relay. Nature Communications. 10: 3226. PMID 31324806 DOI: 10.1038/S41467-019-11239-0  0.01
2019 Batcheller L, Baker D. Cost of disease modifying therapies for multiple sclerosis: Is front-loading the answer? Journal of the Neurological Sciences. 404: 19-28. PMID 31323518 DOI: 10.1016/J.Jns.2019.07.009  0.01
2019 Caskey JR, Wiseman RW, Karl JA, Baker DA, Lee T, Maddox RJ, Raveendran M, Harris RA, Hu J, Muzny DM, Rogers J, O'Connor DH. MHC genotyping from rhesus macaque exome sequences. Immunogenetics. PMID 31321455 DOI: 10.1007/S00251-019-01125-W  1
2019 Aboud M, Orkin C, Podzamczer D, Bogner JR, Baker D, Khuong-Josses MA, Parks D, Angelis K, Kahl LP, Blair EA, Adkison K, Underwood M, Matthews JE, Wynne B, Vandermeulen K, et al. Efficacy and safety of dolutegravir-rilpivirine for maintenance of virological suppression in adults with HIV-1: 100-week data from the randomised, open-label, phase 3 SWORD-1 and SWORD-2 studies. The Lancet. Hiv. PMID 31307948 DOI: 10.1016/S2352-3018(19)30149-3  1
2019 Cong Q, Anishchenko I, Ovchinnikov S, Baker D. Protein interaction networks revealed by proteome coevolution. Science (New York, N.Y.). 365: 185-189. PMID 31296772 DOI: 10.1126/Science.Aaw6718  1
2019 Pyles H, Zhang S, De Yoreo JJ, Baker D. Controlling protein assembly on inorganic crystals through designed protein interfaces. Nature. 571: 251-256. PMID 31292559 DOI: 10.1038/S41586-019-1361-6  1
2019 Baker D, Jacobs BM, Gnanapavan S, Schmierer K, Giovannoni G. Plasma cell and B cell-targeted treatments for use in advanced multiple sclerosis. Multiple Sclerosis and Related Disorders. 35: 19-25. PMID 31279232 DOI: 10.1016/J.Msard.2019.06.030  1
2019 Tabatabaee S, Baker D, Selwood DL, Whalley BJ, Stephens GJ. The Cannabinoid-Like Compound, VSN16R, Acts on Large Conductance, Ca-Activated K Channels to Modulate Hippocampal CA1 Pyramidal Neuron Firing. Pharmaceuticals (Basel, Switzerland). 12. PMID 31277369 DOI: 10.3390/Ph12030104  1
2019 Goodall EF, Leach V, Wang C, Cooper-Knock J, Heath PR, Baker D, Drew DR, Saffrey MJ, Simpson JE, Romero IA, Wharton SB. Age-Associated mRNA and miRNA Expression Changes in the Blood-Brain Barrier. International Journal of Molecular Sciences. 20. PMID 31242592 DOI: 10.3390/Ijms20123097  1
2019 El Bakkouri M, Kouidmi I, Wernimont AK, Amani M, Hutchinson A, Loppnau P, Kim JJ, Flueck C, Walker JR, Seitova A, Senisterra G, Kakihara Y, Kim C, Blackman MJ, Calmettes C, ... Baker DA, et al. Structures of the cGMP-dependent protein kinase in malaria parasites reveal a unique structural relay mechanism for activation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31239348 DOI: 10.1073/Pnas.1905558116  1
2019 Snyder AG, Hubbard NW, Messmer MN, Kofman SB, Hagan CE, Orozco SL, Chiang K, Daniels BP, Baker D, Oberst A. Intratumoral activation of the necroptotic pathway components RIPK1 and RIPK3 potentiates antitumor immunity. Science Immunology. 4. PMID 31227597 DOI: 10.1126/Sciimmunol.Aaw2004  0.01
2019 Mohring F, Hart MN, Rawlinson TA, Henrici R, Charleston JA, Diez Benavente E, Patel A, Hall J, Almond N, Campino S, Clark TG, Sutherland CJ, Baker DA, Draper SJ, Moon RW. Rapid and iterative genome editing in the malaria parasite provides new tools for research. Elife. 8. PMID 31205002 DOI: 10.7554/Elife.45829  1
2019 Hao Y, Baker D, Ten Dijke P. TGF-β-Mediated Epithelial-Mesenchymal Transition and Cancer Metastasis. International Journal of Molecular Sciences. 20. PMID 31195692 DOI: 10.3390/Ijms20112767  1
2019 Wu Q, Peng Z, Anishchenko I, Cong Q, Baker D, Yang J. Protein contact prediction using metagenome sequence data and residual neural networks. Bioinformatics (Oxford, England). PMID 31173061 DOI: 10.1093/Bioinformatics/Btz477  1
2019 Koepnick B, Flatten J, Husain T, Ford A, Silva DA, Bick MJ, Bauer A, Liu G, Ishida Y, Boykov A, Estep RD, Kleinfelter S, Nørgård-Solano T, Wei L, Players F, ... Baker D, et al. De novo protein design by citizen scientists. Nature. PMID 31168091 DOI: 10.1038/S41586-019-1274-4  1
2019 Ravenhall M, Benavente ED, Sutherland CJ, Baker DA, Campino S, Clark TG. An analysis of large structural variation in global Plasmodium falciparum isolates identifies a novel duplication of the chloroquine resistance associated gene. Scientific Reports. 9: 8287. PMID 31164664 DOI: 10.1038/S41598-019-44599-0  1
2019 Suriyamurthy S, Baker D, Ten Dijke P, Iyengar PV. Epigenetic Reprogramming of TGF-β Signaling in Breast Cancer. Cancers. 11. PMID 31137748 DOI: 10.3390/Cancers11050726  1
2019 Valliere MA, Korman TP, Woodall NB, Khitrov GA, Taylor RE, Baker D, Bowie JU. Author Correction: A cell-free platform for the prenylation of natural products and application to cannabinoid production. Nature Communications. 10: 2363. PMID 31127097 DOI: 10.1038/S41467-019-10436-1  1
2019 Cao L, Yu B, Kong D, Cong Q, Yu T, Chen Z, Hu Z, Chang H, Zhong J, Baker D, He Y. Functional expression and characterization of the envelope glycoprotein E1E2 heterodimer of hepatitis C virus. Plos Pathogens. 15: e1007759. PMID 31116791 DOI: 10.1371/Journal.Ppat.1007759  1
2019 Boyken SE, Benhaim MA, Busch F, Jia M, Bick MJ, Choi H, Klima JC, Chen Z, Walkey C, Mileant A, Sahasrabuddhe A, Wei KY, Hodge EA, Byron S, Quijano-Rubio A, ... Baker D, et al. De novo design of tunable, pH-driven conformational changes. Science (New York, N.Y.). 364: 658-664. PMID 31097662 DOI: 10.1126/Science.Aav7897  1
2019 Patel A, Perrin AJ, Flynn HR, Bisson C, Withers-Martinez C, Treeck M, Flueck C, Nicastro G, Martin SR, Ramos A, Gilberger TW, Snijders AP, Blackman MJ, Baker DA. Cyclic AMP signalling controls key components of malaria parasite host cell invasion machinery. Plos Biology. 17: e3000264. PMID 31075098 DOI: 10.1371/Journal.Pbio.3000264  1
2019 Bulutoglu B, Macazo FC, Bale J, King N, Baker D, Minteer SD, Banta S. Multimerization of an Alcohol Dehydrogenase by Fusion to a Designed Self-Assembling Protein Results in Enhanced Bioelectrocatalytic Operational Stability. Acs Applied Materials & Interfaces. PMID 31066271 DOI: 10.1021/Acsami.9B04256  1
2019 Penzo M, de Las Heras-Dueña L, Mata-Cantero L, Diaz-Hernandez B, Vazquez-Muñiz MJ, Ghidelli-Disse S, Drewes G, Fernandez-Alvaro E, Baker DA. High-throughput screening of the Plasmodium falciparum cGMP-dependent protein kinase identified a thiazole scaffold which kills erythrocytic and sexual stage parasites. Scientific Reports. 9: 7005. PMID 31065005 DOI: 10.1038/S41598-019-42801-X  1
2019 Chen Z, Johnson MC, Chen J, Bick MJ, Boyken SE, Lin B, De Yoreo JJ, Kollman JM, Baker D, DiMaio F. Self-assembling 2D arrays with de novo protein building blocks. Journal of the American Chemical Society. PMID 31050411 DOI: 10.1021/Jacs.9B01978  1
2019 Bavinton BR, Prestage GP, Jin F, Phanuphak N, Grinsztejn B, Fairley CK, Baker D, Hoy J, Templeton DJ, Tee BK, Kelleher A, Grulich AE. Strategies used by gay male HIV serodiscordant couples to reduce the risk of HIV transmission from anal intercourse in three countries. Journal of the International Aids Society. 22: e25277. PMID 30983155 DOI: 10.1002/Jia2.25277  1
2019 Basak S, Nobrega RP, Tavella D, Deveau LM, Koga N, Tatsumi-Koga R, Baker D, Massi F, Matthews CR. Networks of electrostatic and hydrophobic interactions modulate the complex folding free energy surface of a designed βα protein. Proceedings of the National Academy of Sciences of the United States of America. PMID 30877249 DOI: 10.1073/Pnas.1818744116  1
2019 Marcandalli J, Fiala B, Ols S, Perotti M, de van der Schueren W, Snijder J, Hodge E, Benhaim M, Ravichandran R, Carter L, Sheffler W, Brunner L, Lawrenz M, Dubois P, Lanzavecchia A, ... Baker D, et al. Induction of Potent Neutralizing Antibody Responses by a Designed Protein Nanoparticle Vaccine for Respiratory Syncytial Virus. Cell. 176: 1420-1431.e17. PMID 30849373 DOI: 10.1016/J.Cell.2019.01.046  1
2019 Flueck C, Drought LG, Jones A, Patel A, Perrin AJ, Walker EM, Nofal SD, Snijders AP, Blackman MJ, Baker DA. Phosphodiesterase beta is the master regulator of cAMP signalling during malaria parasite invasion. Plos Biology. 17: e3000154. PMID 30794532 DOI: 10.1371/Journal.Pbio.3000154  1
2019 Baker D, Pryce G, Herrod SS, Schmierer K. Potential mechanisms of action related to the efficacy and safety of cladribine. Multiple Sclerosis and Related Disorders. 30: 176-186. PMID 30785074 DOI: 10.1016/J.Msard.2019.02.018  1
2019 Baker DA. What has de novo protein design taught us about protein folding and biophysics? Protein Science : a Publication of the Protein Society. PMID 30746840 DOI: 10.1002/Pro.3588  0.01
2019 Anderson CE, Buser JR, Fleming AM, Strauch EM, Ladd PD, Englund J, Baker D, Yager P. An integrated device for the rapid and sensitive detection of the influenza hemagglutinin. Lab On a Chip. PMID 30724293 DOI: 10.1039/C8Lc00691A  1
2019 Valliere MA, Korman TP, Woodall NB, Khitrov GA, Taylor RE, Baker D, Bowie JU. A cell-free platform for the prenylation of natural products and application to cannabinoid production. Nature Communications. 10: 565. PMID 30718485 DOI: 10.1038/S41467-019-08448-Y  1
2019 Silva DA, Yu S, Ulge UY, Spangler JB, Jude KM, Labão-Almeida C, Ali LR, Quijano-Rubio A, Ruterbusch M, Leung I, Biary T, Crowley SJ, Marcos E, Walkey CD, Weitzner BD, ... Baker D, et al. De novo design of potent and selective mimics of IL-2 and IL-15. Nature. 565: 186-191. PMID 30626941 DOI: 10.2210/Pdb6Dg5/Pdb  1
2019 Paajanen P, Kettleborough G, López-Girona E, Giolai M, Heavens D, Baker D, Lister A, Cugliandolo F, Wilde G, Hein I, Macaulay I, Bryan GJ, Clark MD. A critical comparison of technologies for a plant genome sequencing project. Gigascience. PMID 30624602 DOI: 10.1093/Gigascience/Giy163  1
2019 Prunier C, Baker D, Ten Dijke P, Ritsma L. TGF-β Family Signaling Pathways in Cellular Dormancy. Trends in Cancer. 5: 66-78. PMID 30616757 DOI: 10.1016/J.Trecan.2018.10.010  1
2019 Chen Z, Boyken SE, Jia M, Busch F, Flores-Solis D, Bick MJ, Lu P, VanAernum ZL, Sahasrabuddhe A, Langan RA, Bermeo S, Brunette TJ, Mulligan VK, Carter LP, DiMaio F, ... Baker D, et al. Programmable design of orthogonal protein heterodimers. Nature. 565: 106-111. PMID 30568301 DOI: 10.2210/Pdb6Dlm/Pdb  1
2019 Park J, Selvaraj B, McShan AC, Boyken SE, Wei KY, Oberdorfer G, DeGrado W, Sgourakis NG, Cuneo MJ, Myles DA, Baker D. Author response: De novo design of a homo-trimeric amantadine-binding protein Elife. DOI: 10.7554/Elife.47839.Sa2  1
2019 Mohring F, Hart MN, Rawlinson TA, Henrici R, Charleston JA, Benavente ED, Patel A, Hall J, Almond N, Campino S, Clark TG, Sutherland CJ, Baker DA, Draper SJ, Moon RW. Author response: Rapid and iterative genome editing in the malaria parasite Plasmodium knowlesi provides new tools for P. vivax research Elife. DOI: 10.7554/Elife.45829.028  1
2019 Huber D, Chaplin WJ, Chontos A, Kjeldsen H, Christensen-Dalsgaard J, Bedding TR, Ball W, Brahm R, Espinoza N, Henning T, Jordán A, Sarkis P, Knudstrup E, Albrecht S, Grundahl F, ... Baker D, et al. A Hot Saturn Orbiting an Oscillating Late Subgiant Discovered byTESS The Astronomical Journal. 157: 245. DOI: 10.3847/1538-3881/Ab1488  0.01
2019 Baker D. Computationally designed protein activation National Science Review. 6: 609-610. DOI: 10.1093/Nsr/Nwz063  0.01
2019 Baker D, Fomukong-Boden A, Edwards S. 'Don't Follow Them, Look at Me!': Contemplating a Haptic Digital Prototype to Bridge the Conductor and Visually Impaired Performer. Music Education Research. 21: 295-314. DOI: 10.1080/14613808.2019.1605344  0.01
2019 Hooshyar SH, Martinello M, Yee J, Bartlett S, Read P, Baker D, Post J, Finlayson R, Bloch M, Doyle J, Shaw D, Hellard M, Petoumenos K, Marks P, Applegate T, et al. SAT-235-Low HCV reinfection incidence following DAA treatment scale-up in people living with HIV in Australia Journal of Hepatology. 70. DOI: 10.1016/S0618-8278(19)31468-9  1
2018 Li G, Stephen MR, Kodali R, Zahn NM, Poe MM, Tiruveedhula VVNPB, Huber AT, Schussman MK, Qualmann K, Panhans CM, Raddatz NJ, Baker DA, Prevot TD, Banasr M, Sibille E, et al. Synthesis of chiral GABA receptor subtype selective ligands as potential agents to treat schizophrenia as well as depression. Arkivoc : Free Online Journal of Organic Chemistry. 2018: 158-182. PMID 32774192 DOI: 10.24820/Ark.5550190.P010.460  1
2018 Garry DJ, Baker DA, Persad MD, Peresleni T, Kocis C, Demishev M. Progesterone effects on vaginal cytokines in women with a history of preterm birth. Plos One. 13: e0209346. PMID 30596707 DOI: 10.1371/journal.pone.0209346  1
2018 Day AL, Greisen P, Doyle L, Schena A, Stella N, Johnsson K, Baker D, Stoddard B. Unintended specificity of an engineered ligand-binding protein facilitated by unpredicted plasticity of the protein fold. Protein Engineering, Design & Selection : Peds. PMID 30566669 DOI: 10.1093/Protein/Gzy031  1
2018 Baker DA, Caswell HL, Eccles FJR. Self-compassion and depression, anxiety, and resilience in adults with epilepsy. Epilepsy & Behavior : E&B. 90: 154-161. PMID 30557784 DOI: 10.1016/j.yebeh.2018.11.025  0.01
2018 Large JM, Birchall K, Bouloc NS, Merritt AT, Smiljanic-Hurley E, Tsagris DJ, Wheldon MC, Ansell KH, Coombs PJ, Kettleborough CA, Whalley D, Stewart LB, Bowyer PW, Baker DA, Osborne SA. Potent inhibitors of malarial P. Falciparum protein kinase G: Improving the cell activity of a series of imidazopyridines. Bioorganic & Medicinal Chemistry Letters. PMID 30553738 DOI: 10.1016/J.Bmcl.2018.11.039  1
2018 Buechler C, Semler M, Baker DA, Newman C, Cornish JP, Chavez D, Guerra B, Lanford R, Brasky K, Kuhn JH, Johnson RF, O'Connor DH, Bailey AL. Subclinical Infection of Macaques and Baboons with A Baboon Simarterivirus. Viruses. 10. PMID 30544677 DOI: 10.3390/V10120701  1
2018 Romero Romero ML, Yang F, Lin YR, Toth-Petroczy A, Berezovsky IN, Goncearenco A, Yang W, Wellner A, Kumar-Deshmukh F, Sharon M, Baker D, Varani G, Tawfik DS. Simple yet functional phosphate-loop proteins. Proceedings of the National Academy of Sciences of the United States of America. PMID 30504143 DOI: 10.1073/Pnas.1812400115  1
2018 Heffron AS, Mohr EL, Baker D, Haj AK, Buechler CR, Bailey A, Dudley DM, Newman CM, Mohns MS, Koenig M, Breitbach ME, Rasheed M, Stewart LM, Eickhoff J, Pinapati RS, et al. Antibody responses to Zika virus proteins in pregnant and non-pregnant macaques. Plos Neglected Tropical Diseases. 12: e0006903. PMID 30481182 DOI: 10.1371/Journal.Pntd.0006903  1
2018 Rombaut J, Maniyara RA, Bellman R, Acquard D, Baca A, Osmond J, Senaratne W, Quesada M, Baker DE, Mazumder P, Pruneri V. Antireflective Transparent Oleophobic Surface by Non-Interacting Cavities. Acs Applied Materials & Interfaces. PMID 30444107 DOI: 10.1021/Acsami.8B15507  1
2018 Mao Z, Álvarez-González C, Allen-Philbey K, De Trane S, Yildiz O, Campion T, Adams A, Turner BP, Marta M, Gnanapavan S, Espasandin M, Mathews J, Giovannoni G, Baker D, Schmierer K. Treating the ineligible: Disease modification in people with multiple sclerosis beyond NHS England commissioning policies. Multiple Sclerosis and Related Disorders. 27: 247-253. PMID 30419510 DOI: 10.1016/J.Msard.2018.11.001  1
2018 Shen H, Fallas JA, Lynch E, Sheffler W, Parry B, Jannetty N, Decarreau J, Wagenbach M, Vicente JJ, Chen J, Wang L, Dowling Q, Oberdorfer G, Stewart L, Wordeman L, ... Baker D, et al. De novo design of self-assembling helical protein filaments. Science (New York, N.Y.). 362: 705-709. PMID 30409885 DOI: 10.2210/Pdb6E9R/Pdb  0.01
2018 Callander D, Bourne C, Wand H, Stoové M, Hocking JS, de Wit J, Kaldor JM, Donovan B, Pell C, Finlayson R, Baker D, Forssman B, Tee BK, Kefalas B, Duck T, et al. Assessing the Impacts of Integrated Decision Support Software on Sexual Orientation Recording, Comprehensive Sexual Health Testing, and Detection of Infections Among Gay and Bisexual Men Attending General Practice: Observational Study. Jmir Medical Informatics. 6: e10808. PMID 30401672 DOI: 10.2196/10808  1
2018 Vranjkovic O, Van Newenhizen E, Nordness ME, Blacktop JM, Urbanik LA, Mathy JC, McReynolds JR, Miller AM, Doncheck EM, Kloehn TM, Stinnett GS, Gerndt CH, Ketchesin KD, Baker DA, Seasholtz AF, et al. Enhanced CRFR1-dependent regulation of a ventral tegmental area to prelimbic cortex projection establishes susceptibility to stress-induced cocaine seeking. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 30355627 DOI: 10.1523/Jneurosci.2080-18.2018  1
2018 Grulich AE, Guy R, Amin J, Jin F, Selvey C, Holden J, Schmidt HA, Zablotska I, Price K, Whittaker B, Chant K, Cooper C, McGill S, Telfer B, Yeung B, ... Baker D, et al. Population-level effectiveness of rapid, targeted, high-coverage roll-out of HIV pre-exposure prophylaxis in men who have sex with men: the EPIC-NSW prospective cohort study. The Lancet. Hiv. PMID 30343026 DOI: 10.1016/S2352-3018(18)30215-7  1
2018 Benavente ED, Oresegun DR, de Sessions PF, Walker EM, Roper C, Dombrowski JG, de Souza RM, Marinho CRF, Sutherland CJ, Hibberd ML, Mohareb F, Baker DA, Clark TG, Campino S. Global genetic diversity of var2csa in Plasmodium falciparum with implications for malaria in pregnancy and vaccine development. Scientific Reports. 8: 15429. PMID 30337594 DOI: 10.1038/S41598-018-33767-3  1
2018 Dubuisson N, Marta M, Gnanapavan S, Turner B, Baker D, Thomson A, Schmierer K, Giovannoni G. Inclusion criteria used in trials of people with progressive multiple sclerosis. Multiple Sclerosis (Houndmills, Basingstoke, England). 1352458518803769. PMID 30318994 DOI: 10.1177/1352458518803769  1
2018 Fang H, Gomes AR, Klages N, Pino P, Maco B, Walker EM, Zenonos ZA, Angrisano F, Baum J, Doerig C, Baker DA, Billker O, Brochet M. Epistasis studies reveal redundancy among calcium-dependent protein kinases in motility and invasion of malaria parasites. Nature Communications. 9: 4248. PMID 30315162 DOI: 10.1038/S41467-018-06733-W  1
2018 Maguire JB, Boyken SE, Baker D, Kuhlman B. Correction to Rapid Sampling of Hydrogen Bond Networks for Computational Protein Design. Journal of Chemical Theory and Computation. PMID 30221938 DOI: 10.1021/Acs.Jctc.8B00883  1
2018 Baker D, Pryce G, Amor S, Giovannoni G, Schmierer K. Learning from other autoimmunities to understand targeting of B cells to control multiple sclerosis. Brain : a Journal of Neurology. PMID 30212896 DOI: 10.1093/Brain/Awy239  1
2018 Dou J, Vorobieva AA, Sheffler W, Doyle LA, Park H, Bick MJ, Mao B, Foight GW, Lee MY, Gagnon LA, Carter L, Sankaran B, Ovchinnikov S, Marcos E, Huang PS, ... Baker D, et al. De novo design of a fluorescence-activating β-barrel. Nature. PMID 30209393 DOI: 10.1038/S41586-018-0509-0  1
2018 Jester B, Tinberg CE, Rich MS, Baker D, Fields S. Engineered biosensors from dimeric ligand-binding domains. Acs Synthetic Biology. PMID 30204430 DOI: 10.1021/Acssynbio.8B00242  1
2018 Tsagris DJ, Birchall K, Bouloc N, Large JM, Merritt A, Smiljanic-Hurley E, Wheldon M, Ansell KH, Kettleborough C, Whalley D, Stewart LB, Bowyer PW, Baker DA, Osborne SA. Trisubstituted thiazoles as potent and selective inhibitors of Plasmodium falciparum protein kinase G (PfPKG). Bioorganic & Medicinal Chemistry Letters. PMID 30174152 DOI: 10.1016/J.Bmcl.2018.08.028  1
2018 Buchko GW, Pulavarti SVSRK, Ovchinnikov V, Shaw EA, Rettie SA, Myler PJ, Karplus M, Szyperski T, Baker D, Bahl CD. Cytosolic expression, solution structures, and molecular dynamics simulation of genetically encodable disulfide-rich de novo designed peptides. Protein Science : a Publication of the Protein Society. PMID 30152054 DOI: 10.1002/Pro.3453  0.01
2018 Gushchina S, Pryce G, Yip PK, Wu D, Pallier P, Giovannoni G, Baker D, Bo X. Increased expression of colony-stimulating factor-1 in mouse spinal cord with experimental autoimmune encephalomyelitis correlates with microglial activation and neuronal loss. Glia. PMID 30144320 DOI: 10.1002/Glia.23464  1
2018 Man S, Sanchez Duffhues G, Ten Dijke P, Baker D. The therapeutic potential of targeting the endothelial-to-mesenchymal transition. Angiogenesis. PMID 30076548 DOI: 10.1007/S10456-018-9639-0  0.01
2018 Pryce G, Baker D. Oligoclonal bands in multiple sclerosis; Functional significance and therapeutic implications. Does the specificity matter? Multiple Sclerosis and Related Disorders. 25: 131-137. PMID 30071507 DOI: 10.1016/J.Msard.2018.07.030  1
2018 Bavinton BR, Pinto AN, Phanuphak N, Grinsztejn B, Prestage GP, Zablotska-Manos IB, Jin F, Fairley CK, Moore R, Roth N, Bloch M, Pell C, McNulty AM, Baker D, Hoy J, et al. Viral suppression and HIV transmission in serodiscordant male couples: an international, prospective, observational, cohort study. The Lancet. Hiv. PMID 30025681 DOI: 10.1016/S2352-3018(18)30132-2  1
2018 van Staalduinen J, Baker D, Ten Dijke P, van Dam H. Epithelial-mesenchymal-transition-inducing transcription factors: new targets for tackling chemoresistance in cancer? Oncogene. PMID 30002444 DOI: 10.1038/S41388-018-0378-X  1
2018 Jacobs BM, Ammoscato F, Giovannoni G, Baker D, Schmierer K. Cladribine: mechanisms and mysteries in multiple sclerosis. Journal of Neurology, Neurosurgery, and Psychiatry. PMID 29991490 DOI: 10.1136/Jnnp-2017-317411  1
2018 Lau YK, Baytshtok V, Howard TA, Fiala BM, Morgan JM, Carter LP, Baker D, Lima CD, Bahl CD. Discovery and engineering of enhanced SUMO protease enzymes. The Journal of Biological Chemistry. PMID 29976752 DOI: 10.1074/Jbc.Ra118.004146  0.01
2018 Perrin AJ, Collins CR, Russell MRG, Collinson LM, Baker DA, Blackman MJ. The Actinomyosin Motor Drives Malaria Parasite Red Blood Cell Invasion but Not Egress. Mbio. 9. PMID 29970464 DOI: 10.1128/Mbio.00905-18  1
2018 Geiger-Schuller K, Sforza K, Yuhas M, Parmeggiani F, Baker D, Barrick D. Extreme stability in de novo-designed repeat arrays is determined by unusually stable short-range interactions. Proceedings of the National Academy of Sciences of the United States of America. PMID 29959204 DOI: 10.1073/Pnas.1800283115  1
2018 Yildiz O, Mao Z, Adams A, Dubuisson N, Allen-Philbey K, Giovannoni G, Malaspina A, Baker D, Gnanapavan S, Schmierer K. Disease activity in progressive multiple sclerosis can be effectively reduced by cladribine. Multiple Sclerosis and Related Disorders. 24: 20-27. PMID 29860198 DOI: 10.1016/J.Msard.2018.05.010  1
2018 Maguire JB, Boyken SE, Baker D, Kuhlman B. Rapid Sampling of Hydrogen Bond Networks for Computational Protein Design. Journal of Chemical Theory and Computation. PMID 29652499 DOI: 10.1021/Acs.Jctc.8B00033  1
2018 Ceronie B, Jacobs BM, Baker D, Dubuisson N, Mao Z, Ammoscato F, Lock H, Longhurst HJ, Giovannoni G, Schmierer K. Cladribine treatment of multiple sclerosis is associated with depletion of memory B cells. Journal of Neurology. PMID 29550884 DOI: 10.1007/S00415-018-8830-Y  1
2018 Crook ZR, Sevilla GP, Friend D, Brusniak MY, Bandaranayake AD, Clarke M, Gewe M, Mhyre AJ, Baker D, Strong RK, Bradley P, Olson JM. Publisher Correction: Mammalian display screening of diverse cystine-dense peptides for difficult to drug targets. Nature Communications. 9: 1072. PMID 29523778 DOI: 10.1038/S41467-018-03350-5  1
2018 Sutherland MC, Jarodsky JM, Ovchinnikov S, Baker D, Kranz RG. Structurally Mapping Endogenous Heme in the CcmCDE Membrane Complex for Cytochrome c Biogenesis. Journal of Molecular Biology. PMID 29518410 DOI: 10.1016/J.Jmb.2018.01.022  1
2018 Park H, Ovchinnikov S, Kim DE, DiMaio F, Baker D. Protein homology model refinement by large-scale energy optimization. Proceedings of the National Academy of Sciences of the United States of America. PMID 29507254 DOI: 10.1073/Pnas.1719115115  1
2018 Lu P, Min D, DiMaio F, Wei KY, Vahey MD, Boyken SE, Chen Z, Fallas JA, Ueda G, Sheffler W, Mulligan VK, Xu W, Bowie JU, Baker D. Accurate computational design of multipass transmembrane proteins. Science (New York, N.Y.). 359: 1042-1046. PMID 29496880 DOI: 10.1126/Science.Aaq1739  1
2018 Sockolosky JT, Trotta E, Parisi G, Picton L, Su LL, Le AC, Chhabra A, Silveria SL, George BM, King IC, Tiffany MR, Jude K, Sibener LV, Baker D, Shizuru JA, et al. Selective targeting of engineered T cells using orthogonal IL-2 cytokine-receptor complexes. Science (New York, N.Y.). 359: 1037-1042. PMID 29496879 DOI: 10.1126/Science.Aar3246  1
2018 Silva DA, Stewart L, Lam KH, Jin R, Baker D. Structures and disulfide cross-linking of de novo designed therapeutic mini-proteins. The Febs Journal. PMID 29389072 DOI: 10.1111/Febs.14394  1
2018 Sahasrabuddhe A, Hsia Y, Busch F, Sheffler W, King NP, Baker D, Wysocki VH. Confirmation of intersubunit connectivity and topology of designed protein complexes by native MS. Proceedings of the National Academy of Sciences of the United States of America. PMID 29351988 DOI: 10.1073/Pnas.1713646115  1
2018 Meerstein-Kessel L, van der Lee R, Stone W, Lanke K, Baker DA, Alano P, Silvestrini F, Janse CJ, Khan SM, van de Vegte-Bolmer M, Graumans W, Siebelink-Stoter R, Kooij TWA, Marti M, Drakeley C, et al. Probabilistic data integration identifies reliable gametocyte-specific proteins and transcripts in malaria parasites. Scientific Reports. 8: 410. PMID 29323249 DOI: 10.1038/S41598-017-18840-7  1
2018 Crnosija N, Baker D. Associations between Supplement Information Sources and Menopausal Women's Consumption of Herbal Supplements Journal of Womens Health, Issues and Care. 2018: 1-5. DOI: 10.4172/2325-9795.1000324  0.01
2018 Collins KA, Collins KI, Pepper J, Labadie-Bartz J, Stassun KG, Gaudi BS, Bayliss D, Bento J, COLÓN KD, Feliz D, James D, Johnson MC, Kuhn RB, Lund MB, Penny MT, ... Baker D, et al. The KELT Follow-up Network and Transit False-positive Catalog: Pre-vetted False Positives for TESS The Astronomical Journal. 156: 234. DOI: 10.3847/1538-3881/Aae582  0.01
2018 Marcos E, Chidyausiku TM, McShan AC, Evangelidis T, Nerli S, Carter L, Nivón LG, Davis A, Oberdorfer G, Tripsianes K, Sgourakis NG, Baker D. De novo design of a non-local beta-sheet protein with high stability and accuracy Nature Structural & Molecular Biology. 25: 1028-1034. DOI: 10.2210/Pdb6E5C/Pdb  1
2018 Chen Z, Flores-Solis D, Sgourakis NG, Baker D. De Novo Design of a Protein Heterodimer with Specificity Mediated by Hydrogen Bond Networks Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb6Dmp/Pdb  1
2018 Buchko G, Bahl C, Baker D. Chemical shifts for the de novo mini protein gHH_44 in the reduced state. Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr27420  1
2018 Pulavarti SVSRK, Shaw E, Bahl C, Garry B, Baker D, Szyperski T. Backbone 1H, 13C, and 15N Chemical Shift Assignments for gHEEE_02 in presence of 10 mM TCEP Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr27269  1
2018 Persad MD, Perseleni T, Baker D, Pimentel V, Buckley A, Garretto D. Are Vitamin D Levels Lower in the Breast Milk of Bariatric Surgery Patients? [18N] Obstetrics & Gynecology. 131. DOI: 10.1097/01.Aog.0000533114.69938.D6  1
2018 Demishev M, Persad MD, Peresleni T, Baker D, Hilsenroth J, Garry D. Progesterone Effects on Vaginal Cytokines in Women with a History of Preterm Birth [15E] Obstetrics & Gynecology. 131. DOI: 10.1097/01.Aog.0000533034.50954.C2  1
2018 Persad MD, Perseleni T, Baker D, Pimentel V, Garretto D. 793: Does maternal vitamin D deficiency correlate with lower vitamin D levels in breast milk in women with a history of bariatric surgery? American Journal of Obstetrics and Gynecology. 218. DOI: 10.1016/J.Ajog.2017.11.325  1
2018 Wilson JF, Baker D, Cheney J, Cook M, Ellis M, Freestone R, Gardner D, Geen G, Hemming R, Hodgers D, Howarth S, Jupp A, Lowe N, Orridge S, Shaw M, et al. A role for artificial night-time lighting in long-term changes in populations of 100 widespread macro-moths in UK and Ireland: a citizen-science study Journal of Insect Conservation. 22: 189-196. DOI: 10.1007/S10841-018-0052-1  1
2017 Crook ZR, Sevilla GP, Friend D, Brusniak MY, Bandaranayake AD, Clarke M, Gewe M, Mhyre AJ, Baker D, Strong RK, Bradley P, Olson JM. Mammalian display screening of diverse cystine-dense peptides for difficult to drug targets. Nature Communications. 8: 2244. PMID 29269835 DOI: 10.1038/S41467-017-02098-8  1
2017 Baker DA, Drought LG, Flueck C, Nofal SD, Patel A, Penzo M, Walker EM. Cyclic nucleotide signalling in malaria parasites. Open Biology. 7. PMID 29263246 DOI: 10.1098/Rsob.170213  1
2017 Dubuisson N, Baker D, Kang AS, Pryce G, Marta M, Visser LH, Hofmann WE, Gnanapavan S, Giovannoni G, Schmierer K. Alemtuzumab depletion failure can occur in multiple sclerosis. Immunology. PMID 29247512 DOI: 10.1111/Imm.12879  1
2017 Hosseinzadeh P, Bhardwaj G, Mulligan VK, Shortridge MD, Craven TW, Pardo-Avila F, Rettie SA, Kim DE, Silva DA, Ibrahim YM, Webb IK, Cort JR, Adkins JN, Varani G, Baker D. Comprehensive computational design of ordered peptide macrocycles. Science (New York, N.Y.). 358: 1461-1466. PMID 29242347 DOI: 10.1126/Science.Aap7577  1
2017 Butterfield GL, Lajoie MJ, Gustafson HH, Sellers DL, Nattermann U, Ellis D, Bale JB, Ke S, Lenz GH, Yehdego A, Ravichandran R, Pun SH, King NP, Baker D. Evolution of a designed protein assembly encapsulating its own RNA genome. Nature. PMID 29236688 DOI: 10.1038/Nature25157  1
2017 Nordenfelt P, Moore TI, Mehta SB, Kalappurakkal JM, Swaminathan V, Koga N, Lambert TJ, Baker D, Waters JC, Oldenbourg R, Tani T, Mayor S, Waterman CM, Springer TA. Direction of actin flow dictates integrin LFA-1 orientation during leukocyte migration. Nature Communications. 8: 2047. PMID 29229906 DOI: 10.1038/S41467-017-01848-Y  1
2017 Ruz-Maldonado I, Pingitore A, Liu B, Atanes P, Huang GC, Baker D, Alonso FJ, Bermúdez-Silva FJ, Persaud SJ. LH-21 and Abn-CBD improve β-cell function in isolated human and mouse islets through GPR55-dependent and -independent signalling. Diabetes, Obesity & Metabolism. PMID 29205751 DOI: 10.1111/Dom.13180  1
2017 Forghany Z, Robertson F, Lundby A, Olsen JV, Baker DA. Control of endothelial cell tube formation by Notch ligand intracellular domain interactions with activator protein 1 (AP-1). The Journal of Biological Chemistry. PMID 29196606 DOI: 10.1074/Jbc.M117.819045  1
2017 van Ijzendoorn DGP, Forghany Z, Liebelt F, Vertegaal AC, Jochemsen AG, Bovée JVMG, Szuhai K, Baker DA. Functional Analyses of a Human Vascular Tumor FOS Variant Identify a Novel Degradation Mechanism and a link to Tumorigenesis. The Journal of Biological Chemistry. PMID 29150442 DOI: 10.1074/Jbc.C117.815845  1
2017 Baker D, Giovannoni G, Schmierer K. Marked neutropenia: Significant but rare in people with multiple sclerosis after alemtuzumab treatment. Multiple Sclerosis and Related Disorders. 18: 181-183. PMID 29141806 DOI: 10.1016/J.Msard.2017.09.028  1
2017 McReynolds JR, Doncheck EM, Li Y, Vranjkovic O, Graf EN, Ogasawara D, Cravatt BF, Baker DA, Liu QS, Hillard CJ, Mantsch JR. Stress Promotes Drug Seeking Through Glucocorticoid-Dependent Endocannabinoid Mobilization in the Prelimbic Cortex. Biological Psychiatry. PMID 29100630 DOI: 10.1016/J.Biopsych.2017.09.024  1
2017 Younger D, Berger S, Baker D, Klavins E. High-throughput characterization of protein-protein interactions by reprogramming yeast mating. Proceedings of the National Academy of Sciences of the United States of America. PMID 29087945 DOI: 10.1073/Pnas.1705867114  0.01
2017 Swaminathan V, Kalappurakkal JM, Mehta SB, Nordenfelt P, Moore TI, Koga N, Baker DA, Oldenbourg R, Tani T, Mayor S, Springer TA, Waterman CM. Actin retrograde flow actively aligns and orients ligand-engaged integrins in focal adhesions. Proceedings of the National Academy of Sciences of the United States of America. 114: 10648-10653. PMID 29073038 DOI: 10.1073/Pnas.1701136114  1
2017 Van Patten WJ, Walder R, Adhikari A, Okoniewski SR, Ravichandran R, Tinberg CE, Baker D, Perkins TT. Improved Free-Energy Landscape Quantification Illustrated with a Computationally Designed Protein-Ligand Interaction. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 29069529 DOI: 10.1002/Cphc.201701147  1
2017 Sussman ZW, Peterson RL, Connery AK, Baker DA, Kirkwood MW. Utility of matrix reasoning as an embedded performance validity indicator in pediatric mild traumatic brain injury. Applied Neuropsychology. Child. 1-6. PMID 29058467 DOI: 10.1080/21622965.2017.1382359  1
2017 Dubuisson N, Bauer A, Buckley M, Gilbert R, Paterson A, Marta M, Gnanapavan S, Turner B, Baker D, Giovannoni G, Schmierer K, Thomson A. Validation of an environmentally-friendly and affordable cardboard 9-hole peg test. Multiple Sclerosis and Related Disorders. 17: 172-176. PMID 29055452 DOI: 10.1016/J.Msard.2017.08.002  1
2017 Dou J, Doyle L, Greisen PJ, Schena A, Park H, Johnsson K, Stoddard BL, Baker D. Sampling and Energy Evaluation Challenges in Ligand Binding Protein Design. Protein Science : a Publication of the Protein Society. PMID 28980354 DOI: 10.1002/Pro.3317  1
2017 Dang B, Wu H, Mulligan VK, Mravic M, Wu Y, Lemmin T, Ford A, Silva DA, Baker D, DeGrado WF. De novo design of covalently constrained mesosize protein scaffolds with unique tertiary structures. Proceedings of the National Academy of Sciences of the United States of America. PMID 28973862 DOI: 10.1073/Pnas.1710695114  1
2017 Wheeler DS, Ebben AL, Kurtoglu B, Lovell ME, Bohn AT, Jasek IA, Baker DA, Mantsch JR, Gasser PJ, Wheeler RA. Corticosterone regulates both naturally occurring and cocaine-induced dopamine signaling by selectively decreasing dopamine uptake. The European Journal of Neuroscience. PMID 28965353 DOI: 10.1111/Ejn.13730  1
2017 Chevalier A, Silva DA, Rocklin GJ, Hicks DR, Vergara R, Murapa P, Bernard SM, Zhang L, Lam KH, Yao G, Bahl CD, Miyashita SI, Goreshnik I, Fuller JT, Koday MT, ... Baker D, et al. Massively parallel de novo protein design for targeted therapeutics. Nature. PMID 28953867 DOI: 10.1038/Nature23912  1
2017 Ovchinnikov S, Park H, Kim D, DiMaio F, Baker D. Protein structure prediction using Rosetta in CASP12. Proteins. PMID 28940798 DOI: 10.1002/Prot.25390  1
2017 Bick MJ, Greisen PJ, Morey KJ, Antunes MS, La D, Sankaran B, Reymond L, Johnsson K, Medford JI, Baker D. Computational design of environmental sensors for the potent opioid fentanyl. Elife. 6. PMID 28925919 DOI: 10.7554/Elife.28909  1
2017 Park H, Kim D, Ovchinnikov S, Baker D, DiMaio F. Automatic structure prediction of oligomeric assemblies using Robetta in CASP12. Proteins. PMID 28913931 DOI: 10.1002/Prot.25387  1
2017 Ferrer PE, Bloch M, Roth N, Finlayson R, Baker D, Koh K, Orth D, Urbaityte R, Brown D, Drummond F. A retrospective clinical audit of general practices in Australia to determine the motivation for switch to dolutegravir/abacavir/lamivudine and clinical outcomes. International Journal of Std & Aids. 956462417730474. PMID 28901212 DOI: 10.1177/0956462417730474  1
2017 Yeh CT, Brunette TJ, Baker D, McIntosh-Smith S, Parmeggiani F. Elfin: an algorithm for the computational design of custom three-dimensional structures from modular repeat protein building blocks. Journal of Structural Biology. PMID 28890160 DOI: 10.1016/J.Jsb.2017.09.001  1
2017 Petoumenos K, Huang R, Hoy J, Bloch M, Templeton DJ, Baker D, Giles M, Law MG, Cooper DA. Prevalence of self-reported comorbidities in HIV positive and HIV negative men who have sex with men over 55 years-The Australian Positive & Peers Longevity Evaluation Study (APPLES). Plos One. 12: e0184583. PMID 28886173 DOI: 10.1371/Journal.Pone.0184583  1
2017 Baker DA, Stewart LB, Large JM, Bowyer PW, Ansell KH, Jiménez-Díaz MB, El Bakkouri M, Birchall K, Dechering KJ, Bouloc NS, Coombs PJ, Whalley D, Harding DJ, Smiljanic-Hurley E, Wheldon MC, et al. A potent series targeting the malarial cGMP-dependent protein kinase clears infection and blocks transmission. Nature Communications. 8: 430. PMID 28874661 DOI: 10.1038/S41467-017-00572-X  1
2017 Moody JD, Levy S, Mathieu J, Xing Y, Kim W, Dong C, Tempel W, Robitaille AM, Dang LT, Ferreccio A, Detraux D, Sidhu S, Zhu L, Carter L, Xu C, ... Baker D, et al. First critical repressive H3K27me3 marks in embryonic stem cells identified using designed protein inhibitor. Proceedings of the National Academy of Sciences of the United States of America. PMID 28864533 DOI: 10.1073/Pnas.1706907114  1
2017 Afolabi D, Albor C, Zalewski L, Altmann DR, Baker D, Schmierer K. Positive impact of cladribine on quality of life in people with relapsing multiple sclerosis. Multiple Sclerosis (Houndmills, Basingstoke, England). 1352458517726380. PMID 28817997 DOI: 10.1177/1352458517726380  1
2017 Lin YR, Koga N, Vorobiev SM, Baker D. Cyclic oligomer design with de novo αβ-proteins. Protein Science : a Publication of the Protein Society. PMID 28801928 DOI: 10.1002/Pro.3270  1
2017 Pryce G, Baker D. Antidote to cannabinoid intoxication: Inverse cannabinoid receptor one (CB1) agonism by N-(Piperidin-1-yl)-5-(4-iodophenyl)-1-(2,4-dichlorophenyl)-4-methyl-1H-pyrazole-3-carboxamidse (AM251) reverses the hypothermic effects of cannabinoid receptor one agonism by 1-Naphthalenyl [4-(pentyloxy)-1-naphthalenyl] methanone (CB13) in mice. British Journal of Pharmacology. PMID 28800377 DOI: 10.1111/Bph.13973  1
2017 Anishchenko I, Ovchinnikov S, Kamisetty H, Baker D. Origins of coevolution between residues distant in protein 3D structures. Proceedings of the National Academy of Sciences of the United States of America. PMID 28784799 DOI: 10.1073/Pnas.1702664114  1
2017 Puentes F, van der Star BJ, Boomkamp SD, Kipp M, Boon L, Bosca I, Raffel J, Gnanapavan S, van der Valk P, Stephenson J, Barnett SC, Baker D, Amor S. Neurofilament Light as an Immune Target for Pathogenic Antibodies. Immunology. PMID 28718500 DOI: 10.1111/Imm.12797  1
2017 Rocklin GJ, Chidyausiku TM, Goreshnik I, Ford A, Houliston S, Lemak A, Carter L, Ravichandran R, Mulligan VK, Chevalier A, Arrowsmith CH, Baker D. Global analysis of protein folding using massively parallel design, synthesis, and testing. Science (New York, N.Y.). 357: 168-175. PMID 28706065 DOI: 10.1126/Science.Aan0693  1
2017 Alvarez-Gonzalez C, Adams A, Mathews J, Turner BP, Giovannoni G, Baker D, Schmierer K. Cladribine to treat disease exacerbation after fingolimod discontinuation in progressive multiple sclerosis. Annals of Clinical and Translational Neurology. 4: 506-511. PMID 28695150 DOI: 10.1002/Acn3.410  1
2017 Schoebel S, Mi W, Stein A, Ovchinnikov S, Pavlovicz R, DiMaio F, Baker D, Chambers MG, Su H, Li D, Rapoport TA, Liao M. Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3. Nature. PMID 28682307 DOI: 10.1038/Nature23314  1
2017 Baker D, Pryce G, Visintin C, Sisay S, Bondarenko AI, Ho WSV, Jackson SJ, Williams TE, Al-Izki S, Sevastou I, Okuyama M, Graier WF, Stevenson LA, Tanner C, Ross R, et al. Big conductance calcium-activated potassium channel openers control spasticity without sedation. British Journal of Pharmacology. PMID 28677901 DOI: 10.1111/Bph.13889  1
2017 Dubuisson N, Baker D, Thomson A, Marta M, Gnanapavan S, Turner B, Giovannoni G, Schmierer K. Disease modification in advanced MS: Focus on upper limb function. Multiple Sclerosis (Houndmills, Basingstoke, England). 1352458517717811. PMID 28669257 DOI: 10.1177/1352458517717811  1
2017 Alvis BD, King AB, Pandharipande PP, Weavind LM, Avila K, Leisy PJ, Ajmal M, McHugh M, Keegan KA, Baker DA, Walia A, Hughes CG. Creation and Execution of a Novel Anesthesia Perioperative Care Service at a Veterans Affairs Hospital. Anesthesia and Analgesia. PMID 28632542 DOI: 10.1213/ANE.0000000000001930  0.01
2017 Baker D, Herrod SS, Alvarez-Gonzalez C, Zalewski L, Albor C, Schmierer K. Both cladribine and alemtuzumab may effect MS via B-cell depletion. Neurology(R) Neuroimmunology & Neuroinflammation. 4: e360. PMID 28626781 DOI: 10.1212/Nxi.0000000000000360  1
2017 Sefia E, Pryce G, Meier UC, Giovannoni G, Baker D. Depletion of CD20 B cells fails to inhibit relapsing mouse experimental autoimmune encephalomyelitis. Multiple Sclerosis and Related Disorders. 14: 46-50. PMID 28619431 DOI: 10.1016/J.Msard.2017.03.013  1
2017 Baker D, Herrod SS, Alvarez-Gonzalez C, Giovannoni G, Schmierer K. Interpreting Lymphocyte Reconstitution Data From the Pivotal Phase 3 Trials of Alemtuzumab. Jama Neurology. PMID 28604916 DOI: 10.1001/Jamaneurol.2017.0676  1
2017 Strauch EM, Bernard SM, La D, Bohn AJ, Lee PS, Anderson CE, Nieusma T, Holstein CA, Garcia NK, Hooper KA, Ravichandran R, Nelson JW, Sheffler W, Bloom JD, Lee KK, ... Baker D, et al. Computational design of trimeric influenza-neutralizing proteins targeting the hemagglutinin receptor binding site. Nature Biotechnology. PMID 28604661 DOI: 10.1038/Nbt.3907  0.01
2017 Simkovic F, Ovchinnikov S, Baker D, Rigden DJ. Applications of contact predictions to structural biology. Iucrj. 4: 291-300. PMID 28512576 DOI: 10.1107/S2052252517005115  1
2017 Anderson CE, Holstein CA, Strauch EM, Bennett S, Chevalier A, Nelson JW, Fu E, Baker D, Yager P. A Rapid Diagnostic Assay for Intact Influenza Virus Using a High Affinity Hemagglutinin Binding Protein. Analytical Chemistry. PMID 28499086 DOI: 10.1021/Acs.Analchem.7B00769  1
2017 Kleffner R, Flatten J, Leaver-Fay A, Baker D, Siegel JB, Khatib F, Cooper S. Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta. Bioinformatics (Oxford, England). PMID 28481970 DOI: 10.1093/Bioinformatics/Btx283  1
2017 Alford RF, Leaver-Fay A, Jeliazkov JR, O'Meara MJ, DiMaio FP, Park H, Shapovalov MV, Renfrew PD, Mulligan VK, Kappel K, Labonte JW, Pacella MS, Bonneau R, Bradley P, Dunbrack RL, ... Baker D, et al. The Rosetta all-atom energy function for macromolecular modeling and design. Journal of Chemical Theory and Computation. PMID 28430426 DOI: 10.1021/Acs.Jctc.7B00125  1
2017 Thomson A, Raciborska D, Baker D, Giovannoni G. How to start a blog. Practical Neurology. PMID 28404618 DOI: 10.1136/Practneurol-2017-001597  1
2017 Petrova N, Carassiti D, Altmann DR, Baker D, Schmierer K. Axonal loss in the multiple sclerosis spinal cord revisited. Brain Pathology (Zurich, Switzerland). PMID 28401686 DOI: 10.1111/Bpa.12516  1
2017 Giovannoni G, Cutter G, Pia-Sormani M, Belachew S, Hyde R, Koendgen H, Knappertz V, Tomic D, Leppert D, Herndon R, Wheeler-Kingshott CA, Ciccarelli O, Selwood D, di Cantogno EV, Ben-Amor AF, ... Baker D, et al. Is multiple sclerosis a length-dependent central axonopathy? The case for therapeutic lag and the asynchronous progressive MS hypotheses. Multiple Sclerosis and Related Disorders. 12: 70-78. PMID 28283111 DOI: 10.1016/J.Msard.2017.01.007  1
2017 Ganter M, Goldberg JM, Dvorin JD, Paulo JA, King JG, Tripathi AK, Paul AS, Yang J, Coppens I, Jiang RH, Elsworth B, Baker DA, Dinglasan RR, Gygi SP, Duraisingh MT. Erratum: Plasmodium falciparum CRK4 directs continuous rounds of DNA replication during schizogony. Nature Microbiology. 2: 17038. PMID 28263306 DOI: 10.1038/nmicrobiol.2017.38  1
2017 Ganter M, Goldberg JM, Dvorin JD, Paulo JA, King JG, Tripathi AK, Paul AS, Yang J, Coppens I, Jiang RH, Elsworth B, Baker DA, Dinglasan RR, Gygi SP, Duraisingh MT. Plasmodium falciparum CRK4 directs continuous rounds of DNA replication during schizogony. Nature Microbiology. 2: 17017. PMID 28211852 DOI: 10.1038/Nmicrobiol.2017.17  1
2017 Baker D, Marta M, Pryce G, Giovannoni G, Schmierer K. Memory B Cells are Major Targets for Effective Immunotherapy in Relapsing Multiple Sclerosis. Ebiomedicine. PMID 28161400 DOI: 10.1016/J.Ebiom.2017.01.042  1
2017 Goldsmith M, Aggarwal N, Ashani Y, Jubran H, Greisen PJ, Ovchinnikov S, Leader H, Baker D, Sussman JL, Goldenzweig A, Fleishman SJ, Tawfik DS. Overcoming an optimization plateau in the directed evolution of highly efficient nerve agent bioscavengers. Protein Engineering, Design & Selection : Peds. 1-13. PMID 28159998 DOI: 10.1093/Protein/Gzx003  1
2017 Jiao WB, Garcia Accinelli G, Hartwig B, Kiefer C, Baker D, Severing E, Willing EM, Piednoel M, Woetzel S, Madrid-Herrero E, Huettel B, Hümann U, Reinhard R, Koch MA, Swan D, et al. Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data. Genome Research. PMID 28159771 DOI: 10.1101/Gr.213652.116  1
2017 Ovchinnikov S, Park H, Varghese N, Huang PS, Pavlopoulos GA, Kim DE, Kamisetty H, Kyrpides NC, Baker D. Protein structure determination using metagenome sequence data. Science (New York, N.Y.). 355: 294-298. PMID 28104891 DOI: 10.1126/Science.Aah4043  1
2017 Marcos E, Basanta B, Chidyausiku TM, Tang Y, Oberdorfer G, Liu G, Swapna GV, Guan R, Silva DA, Dou J, Pereira JH, Xiao R, Sankaran B, Zwart PH, Montelione GT, Baker D, et al. Principles for designing proteins with cavities formed by curved β sheets. Science (New York, N.Y.). 355: 201-206. PMID 28082595 DOI: 10.1126/Science.Aah7389  1
2017 Obexer R, Godina A, Garrabou X, Mittl PR, Baker D, Griffiths AD, Hilvert D. Emergence of a catalytic tetrad during evolution of a highly active artificial aldolase. Nature Chemistry. 9: 50-56. PMID 27995916 DOI: 10.1038/Nchem.2596  1
2017 Bick MJ, Greisen PJ, Morey KJ, Antunes MS, La D, Sankaran B, Reymond L, Johnsson K, Medford JI, Baker D. Author response: Computational design of environmental sensors for the potent opioid fentanyl Elife. DOI: 10.7554/Elife.28909.029  1
2017 Shortridge MD, Hosseinzadeh P, Pardo-Avila F, Varani G, Baker D. Solution structure of de novo macrocycle design12_ss Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb6Be7/Pdb  1
2017 Dang B, Wu H, Mulligan VK, Mravic M, Wu Y, Lemmin T, Ford A, Silva D, Baker D, DeGrado WF. De Novo Design of Novel Covalent Constrained Meso-size Peptide Scaffolds with Unique Tertiary Structures Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb5V2G/Pdb  1
2017 Lemak A, Rocklin GJ, Houliston S, Carter L, Chidyausiku TM, Baker D, Arrowsmith CH. Solution NMR structure of the de novo mini protein HEEH_rd4_0097 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb5Uyo/Pdb  1
2017 Crook ZR, Bradley P, Sevilla G, Friend D, King C, Mhyre A, Strong R, Baker D, Olson JM. Abstract 5573: A high-affinity Optide (optimized peptide) inhibitor of the Hippo pathway’s YAP-TEAD interaction Cancer Research. 77: 5573-5573. DOI: 10.1158/1538-7445.Am2017-5573  1
2017 Schmierer K, Marta M, Pryce G, Giovannoni G, Baker D. PO150 Memory b cells are key for immunotherapy in multiple sclerosis Journal of Neurology, Neurosurgery, and Psychiatry. 88. DOI: 10.1136/Jnnp-2017-Abn.179  1
2017 Schmierer K, Herrod S, Alvarez-Gonzalez C, Giovannoni G, Baker D. PO149 A new perspective on autoimmunity after alemtuzumab Journal of Neurology, Neurosurgery, and Psychiatry. 88. DOI: 10.1136/Jnnp-2017-Abn.178  1
2017 Mao Z, Alvarez-Gonzalez C, Allen-Philbey K, Mathews J, Turner BP, Gnanapavan S, Marta M, Baker D, Giovannoni G, Schmierer K. PO134 Personalised dosing of cladribine to treat multiple sclerosis Journal of Neurology, Neurosurgery, and Psychiatry. 88. DOI: 10.1136/Jnnp-2017-Abn.164  1
2017 Dubuisson N, Bauer A, Marta M, Gnanapavan S, Turner B, Baker D, Giovannoni G, Schmierer K, Thomson A. PO124 Validation of an environmentally-friendly and affordable cardboard 9-hole peg test Journal of Neurology, Neurosurgery, and Psychiatry. 88. DOI: 10.1136/Jnnp-2017-Abn.154  1
2017 Martinello M, Dore GJ, Bopage RI, Finlayson R, Baker D, Bloch M, Filep E, Skurowski J, Lin L, Lamoury F, Bartlett S, Applegate T, Hellard M, Matthews GV. O7 Moving towards HCV elimination in HIV/HCV co- infection in Australia following universal access to interferon-free therapy Journal of Virus Eradication. 3: 3. DOI: 10.1016/S2055-6640(20)30890-6  1
2017 Martinello M, Dore GJ, Bopage RI, Finlayson R, Baker D, Bloch M, Wilcox A, Filep E, Hellard M, Matthews GV. DAA treatment scale-up in HIV/HCV co-infection: characterisinga population at risk for reinfection Journal of Hepatology. 66. DOI: 10.1016/S0168-8278(17)31388-0  1
2017 Van Pattten WJ, Walder R, Adhikari A, Ravichandran R, Tinberg CE, Baker D, Perkins TT. A Computationally Designed Protein-Ligand Interaction is Mechanically Robust Biophysical Journal. 112: 455a. DOI: 10.1016/J.Bpj.2016.11.2440  0.01
2017 Rocklin GJ, Chidyausiku T, Goreshnik I, Ford A, Houliston S, Arrowsmith C, Baker D. High-Throughput Protein Design Reveals Quantitative Protein Stability Requirements Biophysical Journal. 112: 194a. DOI: 10.1016/J.Bpj.2016.11.1076  0.01
2017 Van Patten WJ, Walder R, Adhikari A, Okoniewski SR, Ravichandran R, Tinberg CE, Baker D, Perkins TT. Front Cover: Improved Free-Energy Landscape Quantification Illustrated with a Computationally Designed Protein-Ligand Interaction (ChemPhysChem 1/2018) Chemphyschem. 19: 1-1. DOI: 10.1002/Cphc.201701341  0.01
2016 Phippen SW, Stevens CA, Vance TD, King NP, Baker D, Davies PL. Multivalent Display of Antifreeze Proteins by Fusion to Self-Assembling Protein Cages Enhances Ice-Binding Activities. Biochemistry. 55: 6811-6820. PMID 27951652 DOI: 10.1021/Acs.Biochem.6B00864  1
2016 Mills JH, Sheffler W, Ener ME, Almhjell PJ, Oberdorfer G, Pereira JH, Parmeggiani F, Sankaran B, Zwart PH, Baker D. Computational design of a homotrimeric metalloprotein with a trisbipyridyl core. Proceedings of the National Academy of Sciences of the United States of America. PMID 27940918 DOI: 10.1073/Pnas.1600188113  1
2016 Giolai M, Paajanen P, Verweij W, Percival-Alwyn L, Baker D, Witek K, Jupe F, Bryan G, Hein I, Jones JD, Clark MD. Targeted capture and sequencing of gene-sized DNA molecules. Biotechniques. 61: 315-322. PMID 27938323 DOI: 10.2144/000114484  1
2016 von Kutzleben S, Pryce G, Giovannoni G, Baker D. Depletion of CD52 positive cells inhibits the development of CNS autoimmune disease, but deletes an immune-tolerance promoting CD8 T cell population. Implications for secondary autoimmunity of alemtuzumab in multiple sclerosis. Immunology. PMID 27925187 DOI: 10.1111/Imm.12696  1
2016 Baker D, Anandhakrishnan A, Tuite-Dalton KA, Lockart-Jones H, Middleton RM, Ford DV, Crowe C, Giovannoni G. How to refer to people with disease in research outputs: The disconnection between academic practise and that preferred by people with multiple sclerosis. Multiple Sclerosis and Related Disorders. 10: 127-133. PMID 27919479 DOI: 10.1016/J.Msard.2016.09.007  1
2016 Rose JC, Huang PS, Camp ND, Ye J, Leidal AM, Goreshnik I, Trevillian BM, Dickinson MS, Cunningham-Bryant D, Debnath J, Baker D, Wolf-Yadlin A, Maly DJ. A computationally engineered RAS rheostat reveals RAS-ERK signaling dynamics. Nature Chemical Biology. PMID 27870838 DOI: 10.1038/Nchembio.2244  1
2016 Berger S, Procko E, Margineantu D, Lee EF, Shen BW, Zelter A, Silva DA, Chawla K, Herold MJ, Garnier JM, Johnson R, MacCoss MJ, Lessene G, Davis TN, Stayton PS, ... Baker D, et al. Computationally designed high specificity inhibitors delineate the roles of BCL2 family proteins in cancer. Elife. 5. PMID 27805565 DOI: 10.7554/Elife.20352  1
2016 Horowitz S, Koepnick B, Martin R, Tymieniecki A, Winburn AA, Cooper S, Flatten J, Rogawski DS, Koropatkin NM, Hailu TT, Jain N, Koldewey P, Ahlstrom LS, Chapman MR, Sikkema AP, ... Baker D, et al. Corrigendum: Determining crystal structures through crowdsourcing and coursework. Nature Communications. 7: 13392. PMID 27779204 DOI: 10.1038/Ncomms13392  1
2016 Park H, Bradley P, Greisen P, Liu Y, Mulligan VK, Kim DE, Baker D, DiMaio F. Simultaneous optimization of biomolecular energy function on features from small molecules and macromolecules. Journal of Chemical Theory and Computation. PMID 27766851 DOI: 10.1021/Acs.Jctc.6B00819  1
2016 Hsia Y, Bale JB, Gonen S, Shi D, Sheffler W, Fong KK, Nattermann U, Xu C, Huang PS, Ravichandran R, Yi S, Davis TN, Gonen T, King NP, Baker D. Corrigendum: Design of a hyperstable 60-subunit protein icosahedron. Nature. PMID 27760110 DOI: 10.1038/Nature20108  1
2016 Baker DA, Perez Algorta G. The Relationship Between Online Social Networking and Depression: A Systematic Review of Quantitative Studies. Cyberpsychology, Behavior and Social Networking. PMID 27732062 DOI: 10.1089/cyber.2016.0206  0.01
2016 Reichen C, Hansen S, Forzani C, Honegger A, Fleishman SJ, Zhou T, Parmeggiani F, Ernst P, Madhurantakam C, Ewald C, Mittl PR, Zerbe O, Baker D, Caflisch A, Plückthun A. Computationally Designed Armadillo Repeat Proteins for Modular Peptide Recognition. Journal of Molecular Biology. PMID 27664438 DOI: 10.1016/J.Jmb.2016.09.012  1
2016 Chen J, Varga A, Selvarajah S, Jenes A, Dienes B, Sousa-Valente J, Kulik A, Veress G, Brain SD, Baker D, Urban L, Mackie K, Nagy I. Spatial Distribution of the Cannabinoid Type 1 and Capsaicin Receptors May Contribute to the Complexity of Their Crosstalk. Scientific Reports. 6: 33307. PMID 27653550 DOI: 10.1038/Srep33307  1
2016 Agahozo MC, Peferoen L, Baker D, Amor S. CD20 therapies in multiple sclerosis and experimental autoimmune encephalomyelitis - Targeting T or B cells? Multiple Sclerosis and Related Disorders. 9: 110-7. PMID 27645355 DOI: 10.1016/J.Msard.2016.07.011  1
2016 Horowitz S, Koepnick B, Martin R, Tymieniecki A, Winburn AA, Cooper S, Flatten J, Rogawski DS, Koropatkin NM, Hailu TT, Jain N, Koldewey P, Ahlstrom LS, Chapman MR, Sikkema AP, ... Baker D, et al. Determining crystal structures through crowdsourcing and coursework. Nature Communications. 7: 12549. PMID 27633552 DOI: 10.1038/Ncomms12549  1
2016 Huang PS, Boyken SE, Baker D. The coming of age of de novo protein design. Nature. 537: 320-327. PMID 27629638 DOI: 10.1038/Nature19946  1
2016 Bhardwaj G, Mulligan VK, Bahl CD, Gilmore JM, Harvey PJ, Cheneval O, Buchko GW, Pulavarti SV, Kaas Q, Eletsky A, Huang PS, Johnsen WA, Greisen PJ, Rocklin GJ, Song Y, ... Baker D, et al. Accurate de novo design of hyperstable constrained peptides. Nature. PMID 27626386 DOI: 10.1038/Nature19791  1
2016 McReynolds JR, Taylor A, Vranjkovic O, Ambrosius T, Derricks O, Nino B, Kurtoglu B, Wheeler RA, Baker DA, Gasser PJ, Mantsch JR. Corticosterone Potentiation of Cocaine-Induced Reinstatement of Conditioned Place Preference in Mice is Mediated by Blockade of the Organic Cation Transporter 3. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. PMID 27604564 DOI: 10.1038/Npp.2016.187  1
2016 Hurley MM, Maunze B, Block ME, Frenkel MM, Reilly MJ, Kim E, Chen Y, Li Y, Baker DA, Liu QS, Choi S. Pituitary Adenylate-Cyclase Activating Polypeptide Regulates Hunger- and Palatability-Induced Binge Eating. Frontiers in Neuroscience. 10: 383. PMID 27597817 DOI: 10.3389/Fnins.2016.00383  1
2016 Liu B, Song S, Maldonado IR, Pingitore A, Huang GC, Baker D, Jones PM, Persaud SJ. GPR55-dependent stimulation of insulin secretion from isolated mouse and human islets of Langerhans. Diabetes, Obesity & Metabolism. PMID 27561953 DOI: 10.1111/Dom.12780  1
2016 Kaplan G, Lee F, Onda M, Kolyvas E, Bhardwaj G, Baker D, Pastan I. Protection of the Furin Cleavage Site in Low-Toxicity Immunotoxins Based on Pseudomonas Exotoxin A. Toxins. 8. PMID 27463727 DOI: 10.3390/Toxins8080217  1
2016 Bale JB, Gonen S, Liu Y, Sheffler W, Ellis D, Thomas C, Cascio D, Yeates TO, Gonen T, King NP, Baker D. Accurate design of megadalton-scale two-component icosahedral protein complexes. Science (New York, N.Y.). 353: 389-394. PMID 27463675 DOI: 10.1126/Science.Aaf8818  1
2016 Martinello M, Dore GJ, Skurowski J, Bopage RI, Finlayson R, Baker D, Bloch M, Matthews GV. Antiretroviral Use in the CEASE Cohort Study and Implications for Direct-Acting Antiviral Therapy in Human Immunodeficiency Virus/Hepatitis C Virus Coinfection. Open Forum Infectious Diseases. 3: ofw105. PMID 27419177 DOI: 10.1093/Ofid/Ofw105  1
2016 Peferoen LA, Breur M, van de Berg S, Peferoen-Baert R, Boddeke EH, van der Valk P, Pryce G, van Noort JM, Baker D, Amor S. Ageing and recurrent episodes of neuroinflammation promote progressive eae in biozzi abh mice. Immunology. PMID 27388634 DOI: 10.1111/Imm.12644  1
2016 Sevastou I, Pryce G, Baker D, Selwood DL. Characterisation of Transcriptional Changes in the Spinal Cord of the Progressive Experimental Autoimmune Encephalomyelitis Biozzi ABH Mouse Model by RNA Sequencing. Plos One. 11: e0157754. PMID 27355629 DOI: 10.1371/Journal.Pone.0157754  1
2016 Hsia Y, Bale JB, Gonen S, Shi D, Sheffler W, Fong KK, Nattermann U, Xu C, Huang PS, Ravichandran R, Yi S, Davis TN, Gonen T, King NP, Baker D. Design of a hyperstable 60-subunit protein icosahedron. Nature. PMID 27309817 DOI: 10.1038/Nature18010  1
2016 Mak WS, Tran S, Marcheschi R, Bertolani S, Thompson J, Baker D, Liao JC, Siegel JB. Corrigendum: Integrative genomic mining for enzyme function to enable engineering of a non-natural biosynthetic pathway. Nature Communications. 7: 11912. PMID 27271283 DOI: 10.1038/Ncomms11912  1
2016 Bolon DN, Baker D, Tawfik DS. Editorial. Protein Science : a Publication of the Protein Society. PMID 27214768 DOI: 10.1002/Pro.2949  1
2016 Heinze K, Sasaki E, King NP, Baker D, Hilvert D, Wuite GJ, Roos WH. Protein Nanocontainers from Nonviral Origin: Testing the Mechanics of Artificial and Natural Protein Cages by AFM. The Journal of Physical Chemistry. B. PMID 27187612 DOI: 10.1021/Acs.Jpcb.6B01464  1
2016 Rödström KE, Regenthal P, Bahl C, Ford A, Baker D, Lindkvist-Petersson K. Two common structural motifs for TCR recognition by staphylococcal enterotoxins. Scientific Reports. 6: 25796. PMID 27180909 DOI: 10.1038/Srep25796  1
2016 Baker DA, Peresleni T, Kocis C. Inflammatory Markers in Vestibulodynia [4]. Obstetrics and Gynecology. 127: 1S-2S. PMID 27176158 DOI: 10.1097/01.Aog.0000483621.23062.8F  1
2016 Connery AK, Peterson RL, Baker DA, Randolph C, Kirkwood MW. The Role of Neuropsychological Evaluation in the Clinical Management of Concussion. Physical Medicine and Rehabilitation Clinics of North America. 27: 475-86. PMID 27154857 DOI: 10.1016/J.Pmr.2015.12.001  1
2016 Boyken SE, Chen Z, Groves B, Langan RA, Oberdorfer G, Ford A, Gilmore JM, Xu C, DiMaio F, Pereira JH, Sankaran B, Seelig G, Zwart PH, Baker D. De novo design of protein homo-oligomers with modular hydrogen-bond network-mediated specificity. Science (New York, N.Y.). 352: 680-7. PMID 27151862 DOI: 10.1126/Science.Aad8865  1
2016 Connery AK, Peterson RL, Baker DA, Kirkwood MW. The impact of pediatric neuropsychological consultation in mild traumatic brain injury: a model for providing feedback after invalid performance. The Clinical Neuropsychologist. 1-20. PMID 27142647 DOI: 10.1080/13854046.2016.1177596  1
2016 Witek K, Jupe F, Witek AI, Baker D, Clark MD, Jones JD. Accelerated cloning of a potato late blight-resistance gene using RenSeq and SMRT sequencing. Nature Biotechnology. PMID 27111721 DOI: 10.1038/Nbt.3540  1
2016 Campino S, Benavente ED, Assefa S, Thompson E, Drought LG, Taylor CJ, Gorvett Z, Carret CK, Flueck C, Ivens AC, Kwiatkowski DP, Alano P, Baker DA, Clark TG. Genomic variation in two gametocyte non-producing Plasmodium falciparum clonal lines. Malaria Journal. 15: 229. PMID 27098483 DOI: 10.1186/S12936-016-1254-1  1
2016 Garcia KE, Babanova S, Scheffler W, Hans M, Baker D, Atanassov P, Banta S. Designed protein aggregates entrapping carbon nanotubes for bioelectrochemical oxygen reduction. Biotechnology and Bioengineering. PMID 27093643 DOI: 10.1002/Bit.25996  1
2016 Lee FJ, Monteiro P, Baker D, Bloch M, Roth N, Finlayson R, Moore R, Hoy J, Martinez E, Carr A. Rosuvastatin vs. protease inhibitor switching for hypercholesterolaemia: a randomized trial. Hiv Medicine. PMID 26987376 DOI: 10.1111/Hiv.12362  1
2016 Hurley MM, Resch JM, Maunze B, Frenkel MM, Baker DA, Choi S. N-acetylcysteine decreases binge eating in a rodent model. International Journal of Obesity (2005). PMID 26975440 DOI: 10.1038/Ijo.2016.31  1
2016 Amit I, Baker D, Barker R, Berger B, Bertozzi C, Bhatia S, Biffi A, Demichelis F, Doudna J, Dowdy SF, Endy D, Helmstaedter M, Junca H, June C, Kamb S, et al. Voices of biotech. Nature Biotechnology. 34: 270-275. PMID 26963549 DOI: 10.1038/Nbt.3502  1
2016 Basanta B, Chan KK, Barth P, King T, Hinshaw JR, Sosnick TR, Liu G, Everett J, Xiao R, Montelione GT, Baker D. Introduction of a polar core into the de novo designed protein Top7. Protein Science : a Publication of the Protein Society. PMID 26873166 DOI: 10.1002/Pro.2899  1
2016 Ovchinnikov S, Park H, Kim DE, Liu Y, Yu-Ruei Wang R, Baker D. Structure Prediction using sparse simulated NOE restraints with Rosetta in CASP11. Proteins. PMID 26857542 DOI: 10.1002/Prot.25006  1
2016 Kong L, Albano R, Madayag A, Raddatz N, Mantsch JR, Choi S, Lobner D, Baker DA. Pituitary Adenylate Cyclase-Activating Polypeptide Orchestrates Neuronal Regulation of the Astrocytic Glutamate Releasing Mechanism System xc. Journal of Neurochemistry. PMID 26851652 DOI: 10.1111/Jnc.13566  1
2016 Koday MT, Nelson J, Chevalier A, Koday M, Kalinoski H, Stewart L, Carter L, Nieusma T, Lee PS, Ward AB, Wilson IA, Dagley A, Smee DF, Baker D, Fuller DH. A Computationally Designed Hemagglutinin Stem-Binding Protein Provides In Vivo Protection from Influenza Independent of a Host Immune Response. Plos Pathogens. 12: e1005409. PMID 26845438 DOI: 10.1371/Journal.Ppat.1005409  1
2016 Kirkwood MW, Peterson RL, Baker DA, Connery AK. Parent satisfaction with neuropsychological consultation after pediatric mild traumatic brain injury. Child Neuropsychology : a Journal On Normal and Abnormal Development in Childhood and Adolescence. 1-11. PMID 26739699 DOI: 10.1080/09297049.2015.1130219  1
2016 Taylor ND, Garruss AS, Moretti R, Chan S, Arbing MA, Cascio D, Rogers JK, Isaacs FJ, Kosuri S, Baker D, Fields S, Church GM, Raman S. Engineering an allosteric transcription factor to respond to new ligands. Nature Methods. 13: 177-83. PMID 26689263 DOI: 10.1038/Nmeth.3696  1
2016 Berger S, Procko E, Margineantu D, Lee EF, Shen BW, Zelter A, Silva D, Chawla K, Herold MJ, Garnier J, Johnson R, MacCoss MJ, Lessene G, Davis TN, Stayton PS, ... Baker D, et al. Author response: Computationally designed high specificity inhibitors delineate the roles of BCL2 family proteins in cancer Elife. DOI: 10.7554/Elife.20352.031  1
2016 Szyperski T, Pulavarti S, Shaw E, Bahl C, Garry B, Baker D. Solution structure of the de novo mini protein gHEEE_02 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr30312  1
2016 Lajoie MJ, Butterfield G, Gray E, DaPron K, Stetson D, Baker D, King N. Abstract B073: Protein nanoparticles for controllable T cell activation Cancer Immunology Research. 4. DOI: 10.1158/2326-6066.Imm2016-B073  1
2016 Crook ZR, Bradley P, King C, Mhyre AJ, Baker D, Olson JM. Abstract 2971: Optides (optimized knottin peptides) computationally designed to target the oncogenic HIPPO pathway Cancer Research. 76: 2971-2971. DOI: 10.1158/1538-7445.Am2016-2971  1
2016 Williams T, Pryce G, Giovannoni G, Selwood D, Baker D. Vsn16R-A Novel Treatment For Spasticity In Experimental Multiple Sclerosis Journal of Neurology, Neurosurgery, and Psychiatry. 87. DOI: 10.1136/Jnnp-2016-315106.162  1
2016 Alvarez-Gonzalez C, Allen-Philbey K, Mathews J, Turner B, Baker D, Gnanapavan S, Marta M, Giovannoni G, Schmierer K. Treating Multiple Sclerosis With Cladribine Journal of Neurology, Neurosurgery, and Psychiatry. 87. DOI: 10.1136/Jnnp-2016-315106.121  1
2016 Baker DA, Crnosija N. Associations Between New Mothersʼ Demographics and Knowledge of FDAʼs Role in Supplement Regulation [7A] Obstetrics & Gynecology. 127. DOI: 10.1097/01.Aog.0000483302.81519.D3  1
2016 Witek K, Jupe F, Witek AI, Baker D, Clark MD, Jones JD. SMRT RenSeq protocol Protocol Exchange. DOI: 10.1038/Protex.2016.027  1
2016 Yu R, Mazumder P, Borrelli NF, Carrilero A, Ghosh DS, Maniyara RA, Baker D, Abajo FJGd, Pruneri V. Structural Coloring of Glass Using Dewetted Nanoparticles and Ultrathin Films of Metals Acs Photonics. 3: 1194-1201. DOI: 10.1021/Acsphotonics.6B00090  1
2016 Fuller DH, Koday MT, Nelson J, Chevalier A, Koday M, Smee DF, Hartman AL, Reed DS, Cole KS, Baker D. Computationally engineered influenza antiviral affords broad prophylactic and therapeutic protection against influenza Journal of Virus Eradication. 2: 8. DOI: 10.1016/S2055-6640(20)31112-2  1
2015 Feng J, Jester BW, Tinberg CE, Mandell DJ, Antunes MS, Chari R, Morey KJ, Rios X, Medford JI, Church GM, Fields S, Baker D. A general strategy to construct small molecule biosensors in eukaryotes. Elife. 4. PMID 26714111 DOI: 10.7554/Elife.10606  1
2015 Green JL, Moon RW, Whalley D, Bowyer PW, Wallace C, Rochani A, Kumar R, Howell SA, Grainger M, Jones HM, Ansell KH, Chapman TM, Taylor DL, Osborne SA, Baker DA, et al. Imidazopyridazine inhibitors of Plasmodium falciparum calcium dependent protein kinase 1 also target cGMP-dependent protein kinase and heat shock protein 90 to kill the parasite at different stages of intracellular development. Antimicrobial Agents and Chemotherapy. PMID 26711771 DOI: 10.1128/Aac.01748-15  1
2015 Leung YY, Toledo JB, Nefedov A, Polikar R, Raghavan N, Xie SX, Farnum M, Schultz T, Baek Y, Deerlin VV, Hu WT, Holtzman DM, Fagan AM, Perrin RJ, Grossman M, ... Baker D, et al. Identifying amyloid pathology-related cerebrospinal fluid biomarkers for Alzheimer's disease in a multicohort study. Alzheimer's & Dementia (Amsterdam, Netherlands). 1: 339-348. PMID 26693175 DOI: 10.1016/J.Dadm.2015.06.008  1
2015 Warne J, Pryce G, Hill J, Shi X, Lennerås F, Puentes F, Kip M, Hilditch L, Walker P, Simone MI, Chan AW, Towers GJ, Coker A, Duchen MR, Szabadkai G, Baker D, et al. Selective inhibition of the mitochondrial permeability transition pore protects against neuro-degeneration in experimental multiple sclerosis. The Journal of Biological Chemistry. PMID 26679998 DOI: 10.1074/Jbc.M115.700385  1
2015 Ovchinnikov S, Kim DE, Wang RY, Liu Y, DiMaio F, Baker D. Improved de novo structure prediction in CASP11 by incorporating Co-evolution information into rosetta. Proteins. PMID 26677056 DOI: 10.1002/Prot.24974  1
2015 Doyle L, Hallinan J, Bolduc J, Parmeggiani F, Baker D, Stoddard BL, Bradley P. Rational design of α-helical tandem repeat proteins with closed architectures. Nature. PMID 26675735 DOI: 10.1038/Nature16191  1
2015 Brunette TJ, Parmeggiani F, Huang PS, Bhabha G, Ekiert DC, Tsutakawa SE, Hura GL, Tainer JA, Baker D. Exploring the repeat protein universe through computational protein design. Nature. PMID 26675729 DOI: 10.1038/Nature16162  1
2015 King IC, Gleixner J, Doyle L, Kuzin A, Hunt JF, Xiao R, Montelione GT, Stoddard BL, DiMaio F, Baker D. Precise assembly of complex beta sheet topologies from de novo designed building blocks. Elife. 4. PMID 26650357 DOI: 10.7554/Elife.11012  1
2015 Goldsmith M, Eckstein S, Ashani Y, Greisen P, Leader H, Sussman JL, Aggarwal N, Ovchinnikov S, Tawfik DS, Baker D, Thiermann H, Worek F. Catalytic efficiencies of directly evolved phosphotriesterase variants with structurally different organophosphorus compounds in vitro. Archives of Toxicology. PMID 26612364 DOI: 10.1007/S00204-015-1626-2  1
2015 Mak WS, Tran S, Marcheschi R, Bertolani S, Thompson J, Baker D, Liao JC, Siegel JB. Integrative genomic mining for enzyme function to enable engineering of a non-natural biosynthetic pathway. Nature Communications. 6: 10005. PMID 26598135 DOI: 10.1038/Ncomms10005  1
2015 Blacktop JM, Vranjkovic O, Mayer M, Van Hoof M, Baker DA, Mantsch JR. Antagonism of GABA-B but not GABA-A receptors in the VTA prevents stress- and intra-VTA CRF-induced reinstatement of extinguished cocaine seeking in rats. Neuropharmacology. PMID 26596556 DOI: 10.1016/J.Neuropharm.2015.11.013  1
2015 Huang PS, Feldmeier K, Parmeggiani F, Fernandez Velasco DA, Höcker B, Baker D. De novo design of a four-fold symmetric TIM-barrel protein with atomic-level accuracy. Nature Chemical Biology. PMID 26595462 DOI: 10.1038/Nchembio.1966  1
2015 Ummenthum K, Peferoen LA, Finardi A, Baker D, Pryce G, Mantovani A, Bsibsi M, Bottazzi B, Peferoen-Baert R, van der Valk P, Garlanda C, Kipp M, Furlan R, van Noort JM, Amor S. Pentraxin-3 is upregulated in the central nervous system during MS and EAE, but does not modulate experimental neurological disease. European Journal of Immunology. PMID 26576501 DOI: 10.1002/Eji.201545950  1
2015 Klein JC, Lajoie MJ, Schwartz JJ, Strauch EM, Nelson J, Baker D, Shendure J. Multiplex pairwise assembly of array-derived DNA oligonucleotides. Nucleic Acids Research. PMID 26553805 DOI: 10.1093/Nar/Gkv1177  1
2015 Kirkwood MW, Peterson RL, Connery AK, Baker DA, Forster J. A Pilot Study Investigating Neuropsychological Consultation as an Intervention for Persistent Postconcussive Symptoms in a Pediatric Sample. The Journal of Pediatrics. PMID 26541427 DOI: 10.1016/J.Jpeds.2015.10.014  1
2015 Bednar D, Beerens K, Sebestova E, Bendl J, Khare S, Chaloupkova R, Prokop Z, Brezovsky J, Baker D, Damborsky J. FireProt: Energy- and Evolution-Based Computational Design of Thermostable Multiple-Point Mutants. Plos Computational Biology. 11: e1004556. PMID 26529612 DOI: 10.1371/Journal.Pcbi.1004556  1
2015 Pakpoor J, Disanto G, Altmann DR, Pavitt S, Turner BP, Marta M, Juliusson G, Baker D, Chataway J, Schmierer K. No evidence for higher risk of cancer in patients with multiple sclerosis taking cladribine. Neurology® Neuroimmunology & Neuroinflammation. 2: e158. PMID 26468472 DOI: 10.1212/Nxi.0000000000000158  1
2015 Murray DD, Suzuki K, Law M, Trebicka J, Neuhaus J, Wentworth D, Johnson M, Vjecha MJ, Kelleher AD, Emery S. Circulating microRNAs in Sera Correlate with Soluble Biomarkers of Immune Activation but Do Not Predict Mortality in ART Treated Individuals with HIV-1 Infection: A Case Control Study. Plos One. 10: e0139981. PMID 26465293 DOI: 10.1371/Journal.Pone.0139981  0.01
2015 McReynolds JR, Doncheck EM, Vranjkovic O, Ganzman GS, Baker DA, Hillard CJ, Mantsch JR. CB1 receptor antagonism blocks stress-potentiated reinstatement of cocaine seeking in rats. Psychopharmacology. PMID 26455361 DOI: 10.1007/S00213-015-4092-X  1
2015 Holstein CA, Chevalier A, Bennett S, Anderson CE, Keniston K, Olsen C, Li B, Bales B, Moore DR, Fu E, Baker D, Yager P. Immobilizing affinity proteins to nitrocellulose: a toolbox for paper-based assay developers. Analytical and Bioanalytical Chemistry. PMID 26427504 DOI: 10.1007/S00216-015-9052-0  1
2015 Smith RD, Damm-Ganamet KL, Dunbar JB, Ahmed A, Chinnaswamy K, Delproposto JE, Kubish GM, Tinberg CE, Khare SD, Dou J, Doyle L, Stuckey JA, Baker D, Carlson HA. CSAR Benchmark Exercise 2013: Evaluation of Results from a Combined Computational Protein Design, Docking, and Scoring/Ranking Challenge. Journal of Chemical Information and Modeling. PMID 26419257 DOI: 10.1021/Acs.Jcim.5B00387  1
2015 Pryce G, Baker D. Endocannabinoids in Multiple Sclerosis and Amyotrophic Lateral Sclerosis. Handbook of Experimental Pharmacology. 231: 213-31. PMID 26408162 DOI: 10.1007/978-3-319-20825-1_7  1
2015 Lin YR, Koga N, Tatsumi-Koga R, Liu G, Clouser AF, Montelione GT, Baker D. Control over overall shape and size in de novo designed proteins. Proceedings of the National Academy of Sciences of the United States of America. PMID 26396255 DOI: 10.1073/Pnas.1509508112  1
2015 Baker DA, Ware JM, Schweitzer NJ, Risko EF. Making sense of research on the neuroimage bias. Public Understanding of Science (Bristol, England). PMID 26386020 DOI: 10.1177/0963662515604975  0.01
2015 Wolf C, Siegel JB, Tinberg C, Camarca A, Gianfrani C, Paski S, Guan R, Montelione GT, Baker D, Pultz IS. Engineering of Kuma030: a gliadin peptidase that rapidly degrades immunogenic gliadin peptides in gastric conditions. Journal of the American Chemical Society. PMID 26374198 DOI: 10.1021/Jacs.5B08325  1
2015 Ovchinnikov S, Kinch L, Park H, Liao Y, Pei J, Kim DE, Kamisetty H, Grishin NV, Baker D. Large scale determination of previously unsolved protein structures using evolutionary information. Elife. 4. PMID 26335199 DOI: 10.7554/Elife.09248  1
2015 Peterson RL, Connery AK, Baker DA, Kirkwood MW. Preinjury Emotional-Behavioral Functioning of Children With Lingering Problems After Mild Traumatic Brain Injury. The Journal of Neuropsychiatry and Clinical Neurosciences. appineuropsych141203. PMID 26258490 DOI: 10.1176/Appi.Neuropsych.14120373  1
2015 Heinisch T, Pellizzoni M, Dürrenberger M, Tinberg CE, Köhler V, Klehr J, Häussinger D, Baker D, Ward TR. Improving the Catalytic Performance of an Artificial Metalloenzyme by Computational Design. Journal of the American Chemical Society. 137: 10414-9. PMID 26226626 DOI: 10.1021/Jacs.5B06622  1
2015 Park H, DiMaio F, Baker D. CASP11 refinement experiments with ROSETTA. Proteins. PMID 26205421 DOI: 10.1002/Prot.24862  1
2015 Bale JB, Park RU, Liu Y, Gonen S, Gonen T, Cascio D, King NP, Yeates TO, Baker D. Structure of a designed tetrahedral protein assembly variant engineered to have improved soluble expression. Protein Science : a Publication of the Protein Society. PMID 26174163 DOI: 10.1002/Pro.2748  1
2015 Blok NB, Tan D, Wang RY, Penczek PA, Baker D, DiMaio F, Rapoport TA, Walz T. Unique double-ring structure of the peroxisomal Pex1/Pex6 ATPase complex revealed by cryo-electron microscopy. Proceedings of the National Academy of Sciences of the United States of America. PMID 26170309 DOI: 10.1073/Pnas.1500257112  1
2015 Guenot M, Loizon S, Howard J, Costa G, Baker DA, Mohabeer SY, Troye-Blomberg M, Moreau JF, Déchanet-Merville J, Mercereau-Puijalon O, Mamani-Matsuda M, Behr C. PHOSPHOANTIGEN BURST UPON PLASMODIUM FALCIPARUM SCHIZONT RUPTURE CAN DISTANTLY ACTIVATE VGAMMA9-VDELTA2 T-CELLS. Infection and Immunity. PMID 26169273 DOI: 10.1128/Iai.00446-15  1
2015 Alam MM, Solyakov L, Bottrill AR, Flueck C, Siddiqui FA, Singh S, Mistry S, Viskaduraki M, Lee K, Hopp CS, Chitnis CE, Doerig C, Moon RW, Green JL, Holder AA, Baker DA, et al. Phosphoproteomics reveals malaria parasite Protein Kinase G as a signalling hub regulating egress and invasion. Nature Communications. 6: 7285. PMID 26149123 DOI: 10.1038/Ncomms8285  1
2015 Poust S, Piety J, Bar-Even A, Baker D, Keasling J, Siegel J. Mechanistic Analysis of an Engineered Enzyme that Catalyzes the Formose Reaction. Chembiochem : a European Journal of Chemical Biology. PMID 26109266 DOI: 10.1002/Cbic.201500228  1
2015 Gonen S, DiMaio F, Gonen T, Baker D. PROTEIN DESIGN. Design of ordered two-dimensional arrays mediated by noncovalent protein-protein interfaces. Science (New York, N.Y.). 348: 1365-8. PMID 26089516 DOI: 10.1126/Science.Aaa9897  1
2015 Matthaei JF, DiMaio F, Richards JJ, Pozzo LD, Baker D, Baneyx F. Designing Two-Dimensional Protein Arrays through Fusion of Multimers and Interface Mutations. Nano Letters. PMID 25986921 DOI: 10.1021/Acs.Nanolett.5B01499  1
2015 Mantsch JR, Baker DA, Funk D, Lê AD, Shaham Y. Stress-Induced Reinstatement of Drug Seeking: 20 Years of Progress. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. PMID 25976297 DOI: 10.1038/Npp.2015.142  1
2015 Antala S, Ovchinnikov S, Kamisetty H, Baker D, Dempski RE. Computational modeling and functional studies provide a structural scaffold for the zinc transporter hZIP4. The Journal of Biological Chemistry. PMID 25971965 DOI: 10.1074/Jbc.M114.617613  1
2015 Park H, DiMaio F, Baker D. The origin of consistent protein structure refinement from structural averaging. Structure (London, England : 1993). 23: 1123-8. PMID 25960407 DOI: 10.1016/J.Str.2015.03.022  1
2015 Ramdani G, Naissant B, Thompson E, Breil F, Lorthiois A, Dupuy F, Cummings R, Duffier Y, Corbett Y, Mercereau-Puijalon O, Vernick K, Taramelli D, Baker DA, Langsley G, Lavazec C. cAMP-Signalling Regulates Gametocyte-Infected Erythrocyte Deformability Required for Malaria Parasite Transmission. Plos Pathogens. 11: e1004815. PMID 25951195 DOI: 10.1371/Journal.Ppat.1004815  1
2015 Albano R, Raddatz NJ, Hjelmhaug J, Baker DA, Lobner D. Regulation of System x c (-) by Pharmacological Manipulation of Cellular Thiols. Oxidative Medicine and Cellular Longevity. 2015: 269371. PMID 25949770 DOI: 10.1155/2015/269371  1
2015 Pryce G, Baker D. Cannabinoids fail to show evidence of slowing down the progression of multiple sclerosis. Evidence-Based Medicine. PMID 25895527 DOI: 10.1136/Ebmed-2015-110198  1
2015 O'Meara MJ, Leaver-Fay A, Tyka M, Stein A, Houlihan K, DiMaio F, Bradley P, Kortemme T, Baker D, Snoeyink J, Kuhlman B. A Combined Covalent-Electrostatic Model of Hydrogen Bonding Improves Structure Prediction with Rosetta. Journal of Chemical Theory and Computation. 11: 609-622. PMID 25866491 DOI: 10.1021/Ct500864R  1
2015 Browne L, Lidster K, Al-Izki S, Clutterbuck L, Posada C, Chan AW, Riddall D, Garthwaite J, Baker D, Selwood DL. Correction to Imidazol-1-ylethylindazole Voltage-Gated Sodium Channel Ligands Are Neuroprotective during Optic Neuritis in a Mouse Model of Multiple Sclerosis. Journal of Medicinal Chemistry. 58: 3637. PMID 25849447 DOI: 10.1021/Acs.Jmedchem.5B00508  1
2015 Gidley Larson JC, Flaro L, Peterson RL, Connery AK, Baker DA, Kirkwood MW. The Medical Symptom Validity Test Measures Effort Not Ability in Children: A Comparison Between Mild TBI and Fetal Alcohol Spectrum Disorder Samples. Archives of Clinical Neuropsychology : the Official Journal of the National Academy of Neuropsychologists. 30: 192-9. PMID 25787156 DOI: 10.1093/Arclin/Acv012  1
2015 Giovannoni G, Baker D, Schmierer K. The problem with repurposing: Is there really an alternative to Big Pharma for developing new drugs for multiple sclerosis? Multiple Sclerosis and Related Disorders. 4: 3-5. PMID 25787047 DOI: 10.1016/J.Msard.2014.11.005  1
2015 Baker D, Amor S. Mouse models of multiple sclerosis: lost in translation? Current Pharmaceutical Design. 21: 2440-52. PMID 25777759 DOI: 10.2174/1381612821666150316122706  1
2015 Siegel JB, Smith AL, Poust S, Wargacki AJ, Bar-Even A, Louw C, Shen BW, Eiben CB, Tran HM, Noor E, Gallaher JL, Bale J, Yoshikuni Y, Gelb MH, Keasling JD, ... Baker D, et al. Computational protein design enables a novel one-carbon assimilation pathway. Proceedings of the National Academy of Sciences of the United States of America. 112: 3704-9. PMID 25775555 DOI: 10.1073/Pnas.1500545112  1
2015 Kudryashev M, Wang RY, Brackmann M, Scherer S, Maier T, Baker D, DiMaio F, Stahlberg H, Egelman EH, Basler M. Structure of the type VI secretion system contractile sheath. Cell. 160: 952-62. PMID 25723169 DOI: 10.1016/J.Cell.2015.01.037  1
2015 DiMaio F, Song Y, Li X, Brunner MJ, Xu C, Conticello V, Egelman E, Marlovits TC, Cheng Y, Baker D. Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement. Nature Methods. 12: 361-5. PMID 25707030 DOI: 10.1038/Nmeth.3286  1
2015 Wang RY, Kudryashev M, Li X, Egelman EH, Basler M, Cheng Y, Baker D, DiMaio F. De novo protein structure determination from near-atomic-resolution cryo-EM maps. Nature Methods. 12: 335-8. PMID 25707029 DOI: 10.1038/Nmeth.3287  1
2015 Pearson AD, Mills JH, Song Y, Nasertorabi F, Han GW, Baker D, Stevens RC, Schultz PG. Transition states. Trapping a transition state in a computationally designed protein bottle. Science (New York, N.Y.). 347: 863-7. PMID 25700516 DOI: 10.1126/Science.Aaa2424  1
2015 Henriques G, van Schalkwyk DA, Burrow R, Warhurst DC, Thompson E, Baker DA, Fidock DA, Hallett R, Flueck C, Sutherland CJ. The Mu subunit of Plasmodium falciparum clathrin-associated adaptor protein 2 modulates in vitro parasite response to artemisinin and quinine. Antimicrobial Agents and Chemotherapy. 59: 2540-7. PMID 25691625 DOI: 10.1128/Aac.04067-14  1
2015 Andrews PW, Baker D, Benvinisty N, Miranda B, Bruce K, Brüstle O, Choi M, Choi YM, Crook JM, de Sousa PA, Dvorak P, Freund C, Firpo M, Furue MK, Gokhale P, et al. Points to consider in the development of seed stocks of pluripotent stem cells for clinical applications: International Stem Cell Banking Initiative (ISCBI). Regenerative Medicine. 10: 1-44. PMID 25675265 DOI: 10.2217/Rme.14.93  1
2015 Berguig GY, Convertine AJ, Frayo S, Kern HB, Procko E, Roy D, Srinivasan S, Margineantu DH, Booth G, Palanca-Wessels MC, Baker D, Hockenbery D, Press OW, Stayton PS. Intracellular delivery system for antibody-Peptide drug conjugates. Molecular Therapy : the Journal of the American Society of Gene Therapy. 23: 907-17. PMID 25669432 DOI: 10.1038/Mt.2015.22  1
2015 Biela A, Watkinson M, Meier UC, Baker D, Giovannoni G, Becer CR, Krause S. Disposable MMP-9 sensor based on the degradation of peptide cross-linked hydrogel films using electrochemical impedance spectroscopy. Biosensors & Bioelectronics. 68: 660-7. PMID 25660510 DOI: 10.1016/J.Bios.2015.01.060  1
2015 Wijma HJ, Floor RJ, Bjelic S, Marrink SJ, Baker D, Janssen DB. Enantioselective enzymes by computational design and in silico screening. Angewandte Chemie (International Ed. in English). 54: 3726-30. PMID 25651000 DOI: 10.1002/Anie.201411415  1
2015 Baker DA. The "Second Place" Problem: Assistive Technology in Sports and (Re) Constructing Normal. Science and Engineering Ethics. PMID 25649071 DOI: 10.1007/s11948-015-9629-1  1
2015 Kim JJ, Flueck C, Franz E, Sanabria-Figueroa E, Thompson E, Lorenz R, Bertinetti D, Baker DA, Herberg FW, Kim C. Crystal structures of the carboxyl cGMP binding domain of the Plasmodium falciparum cGMP-dependent protein kinase reveal a novel capping triad crucial for merozoite egress. Plos Pathogens. 11: e1004639. PMID 25646845 DOI: 10.1371/Journal.Ppat.1004639  1
2015 Egelman EH, Xu C, DiMaio F, Magnotti E, Modlin C, Yu X, Wright E, Baker D, Conticello VP. Structural plasticity of helical nanotubes based on coiled-coil assemblies. Structure (London, England : 1993). 23: 280-9. PMID 25620001 DOI: 10.1016/J.Str.2014.12.008  1
2015 Ramaglia V, Jackson SJ, Hughes TR, Neal JW, Baker D, Morgan BP. Complement activation and expression during chronic relapsing experimental autoimmune encephalomyelitis in the Biozzi ABH mouse. Clinical and Experimental Immunology. 180: 432-41. PMID 25619542 DOI: 10.1111/Cei.12595  1
2015 Morag O, Sgourakis NG, Baker D, Goldbourt A. The NMR-Rosetta capsid model of M13 bacteriophage reveals a quadrupled hydrophobic packing epitope. Proceedings of the National Academy of Sciences of the United States of America. 112: 971-6. PMID 25587134 DOI: 10.1073/Pnas.1415393112  1
2015 Park K, Shen BW, Parmeggiani F, Huang PS, Stoddard BL, Baker D. Control of repeat-protein curvature by computational protein design. Nature Structural & Molecular Biology. 22: 167-74. PMID 25580576 DOI: 10.1038/Nsmb.2938  1
2015 Pryce G, Riddall DR, Selwood DL, Giovannoni G, Baker D. Neuroprotection in Experimental Autoimmune Encephalomyelitis and Progressive Multiple Sclerosis by Cannabis-Based Cannabinoids. Journal of Neuroimmune Pharmacology : the Official Journal of the Society On Neuroimmune Pharmacology. 10: 281-92. PMID 25537576 DOI: 10.1007/S11481-014-9575-8  1
2015 Bergeron JR, Worrall LJ, De S, Sgourakis NG, Cheung AH, Lameignere E, Okon M, Wasney GA, Baker D, McIntosh LP, Strynadka NC. The modular structure of the inner-membrane ring component PrgK facilitates assembly of the type III secretion system basal body. Structure (London, England : 1993). 23: 161-72. PMID 25533490 DOI: 10.1016/J.Str.2014.10.021  1
2015 Wu D, Cerutti C, Lopez-Ramirez MA, Pryce G, King-Robson J, Simpson JE, van der Pol SM, Hirst MC, de Vries HE, Sharrack B, Baker D, Male DK, Michael GJ, Romero IA. Brain endothelial miR-146a negatively modulates T-cell adhesion through repressing multiple targets to inhibit NF-κB activation. Journal of Cerebral Blood Flow and Metabolism : Official Journal of the International Society of Cerebral Blood Flow and Metabolism. 35: 412-23. PMID 25515214 DOI: 10.1038/Jcbfm.2014.207  1
2015 Parmeggiani F, Huang PS, Vorobiev S, Xiao R, Park K, Caprari S, Su M, Seetharaman J, Mao L, Janjua H, Montelione GT, Hunt J, Baker D. A general computational approach for repeat protein design. Journal of Molecular Biology. 427: 563-75. PMID 25451037 DOI: 10.1016/J.Jmb.2014.11.005  1
2015 Vittal V, Shi L, Wenzel DM, Scaglione KM, Duncan ED, Basrur V, Elenitoba-Johnson KS, Baker D, Paulson HL, Brzovic PS, Klevit RE. Intrinsic disorder drives N-terminal ubiquitination by Ube2w. Nature Chemical Biology. 11: 83-9. PMID 25436519 DOI: 10.1038/Nchembio.1700  1
2015 Rossi P, Shi L, Liu G, Barbieri CM, Lee HW, Grant TD, Luft JR, Xiao R, Acton TB, Snell EH, Montelione GT, Baker D, Lange OF, Sgourakis NG. A hybrid NMR/SAXS-based approach for discriminating oligomeric protein interfaces using Rosetta. Proteins. 83: 309-17. PMID 25388768 DOI: 10.1002/Prot.24719  1
2015 Callander D, Bourne C, Pell C, Finlayson R, Forssman B, Baker D, de Wit J, Hocking J, Stoové M, Donovan B, Kaldor J, Guy R. Recording the sexual orientation of male patients attending general practice. Family Practice. 32: 35-40. PMID 25236604 DOI: 10.1093/Fampra/Cmu061  1
2015 King IC, Gleixner J, Doyle L, Kuzin A, Hunt JF, Xiao R, Montelione GT, Stoddard BL, DiMaio F, Baker D. Author response: Precise assembly of complex beta sheet topologies from de novo designed building blocks Elife. DOI: 10.7554/Elife.11012.020  1
2015 Feng J, Jester BW, Tinberg CE, Mandell DJ, Antunes MS, Chari R, Morey KJ, Rios X, Medford JI, Church GM, Fields S, Baker D. Author response: A general strategy to construct small molecule biosensors in eukaryotes Elife. DOI: 10.7554/Elife.10606.018  1
2015 Ovchinnikov S, Kinch L, Park H, Liao Y, Pei J, Kim DE, Kamisetty H, Grishin NV, Baker D. Author response: Large-scale determination of previously unsolved protein structures using evolutionary information Elife. DOI: 10.7554/Elife.09248.031  1
2015 Liu G, Lin Y, Koga N, Koga R, Xiao R, Janjua H, Pederson K, Acton TB, Kornhaber G, Everett JK, Baker D, Montelione GT. Solution NMR Structure of DE NOVO DESIGNED PROTEIN, Rossmann2x2 Fold, Northeast Structural Genomics Consortium (NESG) Target OR446 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2N3Z/Pdb  1
2015 Rajagopal P, Klevit R, Shi L, Baker D. Chemical shift assignments and structure of the alpha-crystallin domain from human, HSPB5 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2N0K/Pdb  1
2015 Baker DA, Goldstein M, Pereyra MJ, Wakoli C. When science meets law: The rule of law in the development of the panel’s expert consultation process A History of Law and Lawyers in the Gatt/Wto: the Development of the Rule of Law in the Multilateral Trading System. 434-444. DOI: 10.1017/CBO9781316048160.032  1
2015 Raghavan N, Ard MC, Baker D, Narayan VA, Edland S. The adcs-pacc composite endpoint: An assessment of sample size efficiencies in the aibl study of aging using optimally weighted components Alzheimers & Dementia. 11: 755. DOI: 10.1016/J.Jalz.2015.06.1682  0.01
2015 Wilson JF, Baker D, Cook M, Davis G, Freestone R, Gardner D, Grundy D, Lowe N, Orridge S, Young H. Climate association with fluctuation in annual abundance of fifty widely distributed moths in England and Wales: a citizen-science study Journal of Insect Conservation. 19: 935-946. DOI: 10.1007/S10841-015-9811-4  1
2014 Baker D, Amor S. Experimental autoimmune encephalomyelitis is a good model of multiple sclerosis if used wisely. Multiple Sclerosis and Related Disorders. 3: 555-64. PMID 26265267 DOI: 10.1016/J.Msard.2014.05.002  1
2014 van den Elsen PJ, van Eggermond MC, Puentes F, van der Valk P, Baker D, Amor S. The epigenetics of multiple sclerosis and other related disorders. Multiple Sclerosis and Related Disorders. 3: 163-75. PMID 25878004 DOI: 10.1016/J.Msard.2013.08.007  1
2014 Baker D, Pepper G, Yauner F, Giovannoni G. MSer - A new, neutral descriptor for someone with multiple sclerosis. Multiple Sclerosis and Related Disorders. 3: 31-33. PMID 25877970 DOI: 10.1016/J.Msard.2013.06.010  1
2014 Leblanc P, Moise L, Luza C, Chantaralawan K, Lezeau L, Yuan J, Field M, Richer D, Boyle C, Martin WD, Fishman JB, Berg EA, Baker D, Zeigler B, Mais DE, et al. VaxCelerate II: rapid development of a self-assembling vaccine for Lassa fever. Human Vaccines & Immunotherapeutics. 10: 3022-38. PMID 25483693 DOI: 10.4161/Hv.34413  1
2014 Thyme SB, Song Y, Brunette TJ, Szeto MD, Kusak L, Bradley P, Baker D. Massively parallel determination and modeling of endonuclease substrate specificity. Nucleic Acids Research. 42: 13839-52. PMID 25389263 DOI: 10.1093/Nar/Gku1096  1
2014 McManus H, Petoumenos K, Brown K, Baker D, Russell D, Read T, Smith D, Wray L, Giles M, Hoy J, Carr A, Law M. Loss to follow-up in the Australian HIV Observational Database. Antiviral Therapy. PMID 25377928 DOI: 10.3851/Imp2916  1
2014 Huang PS, Oberdorfer G, Xu C, Pei XY, Nannenga BL, Rogers JM, DiMaio F, Gonen T, Luisi B, Baker D. High thermodynamic stability of parametrically designed helical bundles. Science (New York, N.Y.). 346: 481-5. PMID 25342806 DOI: 10.1126/Science.1257481  1
2014 Liu DS, Nivón LG, Richter F, Goldman PJ, Deerinck TJ, Yao JZ, Richardson D, Phipps WS, Ye AZ, Ellisman MH, Drennan CL, Baker D, Ting AY. Computational design of a red fluorophore ligase for site-specific protein labeling in living cells. Proceedings of the National Academy of Sciences of the United States of America. 111: E4551-9. PMID 25313043 DOI: 10.1073/Pnas.1404736111  1
2014 Demers JP, Habenstein B, Loquet A, Kumar Vasa S, Giller K, Becker S, Baker D, Lange A, Sgourakis NG. High-resolution structure of the Shigella type-III secretion needle by solid-state NMR and cryo-electron microscopy. Nature Communications. 5: 4976. PMID 25264107 DOI: 10.1038/Ncomms5976  1
2014 Giovannoni G, Baker D, Schmierer K. Simvastatin in patients with progressive multiple sclerosis. Lancet (London, England). 384: 952. PMID 25220965 DOI: 10.1016/S0140-6736(14)61621-4  1
2014 Liu Y, Zhang X, Tan YL, Bhabha G, Ekiert DC, Kipnis Y, Bjelic S, Baker D, Kelly JW. De novo-designed enzymes as small-molecule-regulated fluorescence imaging tags and fluorescent reporters. Journal of the American Chemical Society. 136: 13102-5. PMID 25209927 DOI: 10.1021/Ja5056356  1
2014 Vranjkovic O, Gasser PJ, Gerndt CH, Baker DA, Mantsch JR. Stress-induced cocaine seeking requires a beta-2 adrenergic receptor-regulated pathway from the ventral bed nucleus of the stria terminalis that regulates CRF actions in the ventral tegmental area. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 12504-14. PMID 25209288 DOI: 10.1523/Jneurosci.0680-14.2014  1
2014 Flueck C, Baker DA. Malaria parasite epigenetics: when virulence and romance collide. Cell Host & Microbe. 16: 148-50. PMID 25121742 DOI: 10.1016/J.Chom.2014.07.012  1
2014 Resch JM, Albano R, Liu X, Hjelmhaug J, Lobner D, Baker DA, Choi S. Augmented cystine-glutamate exchange by pituitary adenylate cyclase-activating polypeptide signaling via the VPAC1 receptor. Synapse (New York, N.Y.). PMID 25066643 DOI: 10.1002/Syn.21772  1
2014 Rivera D, Revale S, Molina R, Gualpa J, Puente M, Maroniche G, Paris G, Baker D, Clavijo B, McLay K, Spaepen S, Perticari A, Vazquez M, Wisniewski-Dyé F, Watkins C, et al. Complete Genome Sequence of the Model Rhizosphere Strain Azospirillum brasilense Az39, Successfully Applied in Agriculture. Genome Announcements. 2. PMID 25059863 DOI: 10.1128/Genomea.00683-14  1
2014 Bieber T, Chosidow O, Bodsworth N, Tyring S, Hercogova J, Bloch M, Davis M, Lewis M, Boutolleau D, Attali P. Efficacy and safety of aciclovir mucoadhesive buccal tablet in immunocompetent patients with labial herpes (LIP Trial): a double-blind, placebo-controlled, self-initiated trial. Journal of Drugs in Dermatology : Jdd. 13: 791-8. PMID 25007361  1
2014 Mazumder P, Jiang Y, Baker D, Carrilero A, Tulli D, Infante D, Hunt AT, Pruneri V. Superomniphobic, transparent, and antireflection surfaces based on hierarchical nanostructures. Nano Letters. 14: 4677-81. PMID 24988148 DOI: 10.1021/Nl501767J  1
2014 Procko E, Berguig GY, Shen BW, Song Y, Frayo S, Convertine AJ, Margineantu D, Booth G, Correia BE, Cheng Y, Schief WR, Hockenbery DM, Press OW, Stoddard BL, Stayton PS, Baker D, et al. A computationally designed inhibitor of an Epstein-Barr viral Bcl-2 protein induces apoptosis in infected cells. Cell. 157: 1644-56. PMID 24949974 DOI: 10.1016/J.Cell.2014.04.034  1
2014 Magadán JG, Altman MO, Ince WL, Hickman HD, Stevens J, Chevalier A, Baker D, Wilson PC, Ahmed R, Bennink JR, Yewdell JW. Biogenesis of influenza a virus hemagglutinin cross-protective stem epitopes. Plos Pathogens. 10: e1004204. PMID 24945804 DOI: 10.1371/Journal.Ppat.1004204  1
2014 Griss R, Schena A, Reymond L, Patiny L, Werner D, Tinberg CE, Baker D, Johnsson K. Bioluminescent sensor proteins for point-of-care therapeutic drug monitoring Nature Chemical Biology. 10: 598-603. PMID 24907901 DOI: 10.1038/Nchembio.1554  1
2014 King NP, Bale JB, Sheffler W, McNamara DE, Gonen S, Gonen T, Yeates TO, Baker D. Accurate design of co-assembling multi-component protein nanomaterials. Nature. 510: 103-8. PMID 24870237 DOI: 10.1038/Nature13404  1
2014 Alushin GM, Lander GC, Kellogg EH, Zhang R, Baker D, Nogales E. High-resolution microtubule structures reveal the structural transitions in αβ-tubulin upon GTP hydrolysis. Cell. 157: 1117-29. PMID 24855948 DOI: 10.1016/J.Cell.2014.03.053  1
2014 Chen KY, Sun J, Salvo JS, Baker D, Barth P. High-resolution modeling of transmembrane helical protein structures from distant homologues. Plos Computational Biology. 10: e1003636. PMID 24854015 DOI: 10.1371/Journal.Pcbi.1003636  1
2014 Preiswerk N, Beck T, Schulz JD, Milovník P, Mayer C, Siegel JB, Baker D, Hilvert D. Impact of scaffold rigidity on the design and evolution of an artificial Diels-Alderase. Proceedings of the National Academy of Sciences of the United States of America. 111: 8013-8. PMID 24847076 DOI: 10.1073/Pnas.1401073111  1
2014 King C, Garza EN, Mazor R, Linehan JL, Pastan I, Pepper M, Baker D. Removing T-cell epitopes with computational protein design. Proceedings of the National Academy of Sciences of the United States of America. 111: 8577-82. PMID 24843166 DOI: 10.1073/Pnas.1321126111  1
2014 Ovchinnikov S, Kamisetty H, Baker D. Robust and accurate prediction of residue-residue interactions across protein interfaces using evolutionary information. Elife. 3: e02030. PMID 24842992 DOI: 10.7554/Elife.02030  1
2014 Lutgen V, Resch J, Qualmann K, Raddatz NJ, Panhans C, Olander EM, Kong L, Choi S, Mantsch JR, Baker DA. Behavioral assessment of acute inhibition of system xc (-) in rats. Psychopharmacology. 231: 4637-47. PMID 24828877 DOI: 10.1007/S00213-014-3612-4  1
2014 Tewari R, Patzewitz EM, Poulin B, Stewart L, Baker DA. Development of a transgenic Plasmodium berghei line (Pb pfpkg) expressing the P. falciparum cGMP-dependent protein kinase, a novel antimalarial drug target. Plos One. 9: e96923. PMID 24805991 DOI: 10.1371/Journal.Pone.0096923  1
2014 Mazor R, Eberle JA, Hu X, Vassall AN, Onda M, Beers R, Lee EC, Kreitman RJ, Lee B, Baker D, King C, Hassan R, Benhar I, Pastan I. Recombinant immunotoxin for cancer treatment with low immunogenicity by identification and silencing of human T-cell epitopes. Proceedings of the National Academy of Sciences of the United States of America. 111: 8571-6. PMID 24799704 DOI: 10.1073/Pnas.1405153111  1
2014 Hohenadl C, Wodal W, Kerschbaum A, Fritz R, Howard MK, Farcet MR, Portsmouth D, McVey JK, Baker DA, Ehrlich HJ, Barrett PN, Kreil TR. Hyperimmune intravenous immunoglobulin containing high titers of pandemic H1N1 hemagglutinin and neuraminidase antibodies provides dose-dependent protection against lethal virus challenge in SCID mice. Virology Journal. 11: 70. PMID 24739285 DOI: 10.1186/1743-422X-11-70  1
2014 Rajagopalan S, Wang C, Yu K, Kuzin AP, Richter F, Lew S, Miklos AE, Matthews ML, Seetharaman J, Su M, Hunt JF, Cravatt BF, Baker D. Design of activated serine-containing catalytic triads with atomic-level accuracy. Nature Chemical Biology. 10: 386-91. PMID 24705591 DOI: 10.1038/Nchembio.1498  1
2014 McReynolds JR, Vranjkovic O, Thao M, Baker DA, Makky K, Lim Y, Mantsch JR. Beta-2 adrenergic receptors mediate stress-evoked reinstatement of cocaine-induced conditioned place preference and increases in CRF mRNA in the bed nucleus of the stria terminalis in mice. Psychopharmacology. 231: 3953-63. PMID 24696080 DOI: 10.1007/S00213-014-3535-0  1
2014 Wang Y, Khan IF, Boissel S, Jarjour J, Pangallo J, Thyme S, Baker D, Scharenberg AM, Rawlings DJ. Progressive engineering of a homing endonuclease genome editing reagent for the murine X-linked immunodeficiency locus. Nucleic Acids Research. 42: 6463-75. PMID 24682825 DOI: 10.1093/Nar/Gku224  1
2014 Khoury GA, Liwo A, Khatib F, Zhou H, Chopra G, Bacardit J, Bortot LO, Faccioli RA, Deng X, He Y, Krupa P, Li J, Mozolewska MA, Sieradzan AK, Smadbeck J, ... Baker D, et al. WeFold: a coopetition for protein structure prediction. Proteins. 82: 1850-68. PMID 24677212 DOI: 10.1002/Prot.24538  1
2014 Baker D. Protein folding, structure prediction and design Biochemical Society Transactions. 42: 225-229. PMID 24646222 DOI: 10.1042/Bst20130055  1
2014 Connery AK, Baker DA, Kirk JW, Kirkwood MW. The effects of multiple mild traumatic brain injuries on acute injury presentation and neuropsychological recovery in children. Neurosurgery. 75: 31-6. PMID 24618798 DOI: 10.1227/NEU.0000000000000346  1
2014 Kirkwood MW, Peterson RL, Connery AK, Baker DA, Grubenhoff JA. Postconcussive symptom exaggeration after pediatric mild traumatic brain injury. Pediatrics. 133: 643-50. PMID 24616360 DOI: 10.1542/Peds.2013-3195  1
2014 Lopez-Ramirez MA, Wu D, Pryce G, Simpson JE, Reijerkerk A, King-Robson J, Kay O, de Vries HE, Hirst MC, Sharrack B, Baker D, Male DK, Michael GJ, Romero IA. MicroRNA-155 negatively affects blood-brain barrier function during neuroinflammation. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 28: 2551-65. PMID 24604078 DOI: 10.1096/Fj.13-248880  1
2014 Browne L, Lidster K, Al-Izki S, Clutterbuck L, Posada C, Chan AW, Riddall D, Garthwaite J, Baker D, Selwood DL. Imidazol-1-ylethylindazole voltage-gated sodium channel ligands are neuroprotective during optic neuritis in a mouse model of multiple sclerosis. Journal of Medicinal Chemistry. 57: 2942-52. PMID 24601592 DOI: 10.1021/Jm401881Q  1
2014 Brochet M, Collins MO, Smith TK, Thompson E, Sebastian S, Volkmann K, Schwach F, Chappell L, Gomes AR, Berriman M, Rayner JC, Baker DA, Choudhary J, Billker O. Phosphoinositide metabolism links cGMP-dependent protein kinase G to essential Ca²⁺ signals at key decision points in the life cycle of malaria parasites. Plos Biology. 12: e1001806. PMID 24594931 DOI: 10.1371/Journal.Pbio.1001806  1
2014 Liu Y, Tan YL, Zhang X, Bhabha G, Ekiert DC, Genereux JC, Cho Y, Kipnis Y, Bjelic S, Baker D, Kelly JW. Small molecule probes to quantify the functional fraction of a specific protein in a cell with minimal folding equilibrium shifts. Proceedings of the National Academy of Sciences of the United States of America. 111: 4449-54. PMID 24591605 DOI: 10.1073/Pnas.1323268111  1
2014 Kafsack BF, Rovira-Graells N, Clark TG, Bancells C, Crowley VM, Campino SG, Williams AE, Drought LG, Kwiatkowski DP, Baker DA, Cortés A, Llinás M. A transcriptional switch underlies commitment to sexual development in malaria parasites. Nature. 507: 248-52. PMID 24572369 DOI: 10.1038/Nature12920  1
2014 Lavogina D, Budu A, Enkvist E, Hopp CS, Baker DA, Langsley G, Garcia CR, Uri A. Targeting Plasmodium falciparum protein kinases with adenosine analogue-oligoarginine conjugates. Experimental Parasitology. 138: 55-62. PMID 24534615 DOI: 10.1016/J.Exppara.2014.02.001  1
2014 Kirk JW, Hutaff-Lee CF, Connery AK, Baker DA, Kirkwood MW. The relationship between the self-report BASC-2 validity indicators and performance validity test failure after pediatric mild traumatic brain injury. Assessment. 21: 562-9. PMID 24532649 DOI: 10.1177/1073191114520626  1
2014 Amor S, van der Star BJ, Bosca I, Raffel J, Gnanapavan S, Watchorn J, Kuhle J, Giovannoni G, Baker D, Malaspina A, Puentes F. Neurofilament light antibodies in serum reflect response to natalizumab treatment in multiple sclerosis. Multiple Sclerosis (Houndmills, Basingstoke, England). 20: 1355-62. PMID 24515731 DOI: 10.1177/1352458514521887  1
2014 Thyme S, Baker D. Redesigning the specificity of protein-DNA interactions with rosetta Methods in Molecular Biology. 1123: 265-282. PMID 24510272 DOI: 10.1007/978-1-62703-968-0_17  1
2014 Correia BE, Bates JT, Loomis RJ, Baneyx G, Carrico C, Jardine JG, Rupert P, Correnti C, Kalyuzhniy O, Vittal V, Connell MJ, Stevens E, Schroeter A, Chen M, Macpherson S, ... Baker D, et al. Proof of principle for epitope-focused vaccine design. Nature. 507: 201-6. PMID 24499818 DOI: 10.1038/Nature12966  1
2014 Green CM, Kirk JW, Connery AK, Baker DA, Kirkwood MW. The use of the Rey 15-Item Test and recognition trial to evaluate noncredible effort after pediatric mild traumatic brain injury. Journal of Clinical and Experimental Neuropsychology. 36: 261-7. PMID 24479707 DOI: 10.1080/13803395.2013.879096  1
2014 Bates AJ, Sadler JP, Grundy D, Lowe N, Davis G, Baker D, Bridge M, Freestone R, Gardner D, Gibson C, Hemming R, Howarth S, Orridge S, Shaw M, Tams T, et al. Garden and landscape-scale correlates of moths of differing conservation status: significant effects of urbanization and habitat diversity. Plos One. 9: e86925. PMID 24475197 DOI: 10.1371/Journal.Pone.0086925  1
2014 Bloch M, Tong WW, Hoy J, Baker D, Lee FJ, Richardson R, Carr A. Switch from tenofovir to raltegravir increases low bone mineral density and decreases markers of bone turnover over 48 weeks. Hiv Medicine. 15: 373-80. PMID 24460797 DOI: 10.1111/Hiv.12123  1
2014 Baker D, Lidster K, Sottomayor A, Amor S. Two years later: journals are not yet enforcing the ARRIVE guidelines on reporting standards for pre-clinical animal studies. Plos Biology. 12. PMID 24409096 DOI: 10.1371/Journal.Pbio.1001756  1
2014 Wijma HJ, Floor RJ, Jekel PA, Baker D, Marrink SJ, Janssen DB. Computationally designed libraries for rapid enzyme stabilization Protein Engineering, Design and Selection. 27: 49-58. PMID 24402331 DOI: 10.1093/Protein/Gzt061  1
2014 Mao B, Tejero R, Baker D, Montelione GT. Protein NMR structures refined with Rosetta have higher accuracy relative to corresponding X-ray crystal structures. Journal of the American Chemical Society. 136: 1893-906. PMID 24392845 DOI: 10.1021/Ja409845W  1
2014 Strauch EM, Fleishman SJ, Baker D. Computational design of a pH-sensitive IgG binding protein. Proceedings of the National Academy of Sciences of the United States of America. 111: 675-80. PMID 24381156 DOI: 10.1073/Pnas.1313605111  1
2014 Amor S, Peferoen LAN, Vogel DYS, Breur M, Valk Pvd, Baker D, Noort JMv. Inflammation in neurodegenerative diseases – an update Immunology. 142: 151-166. PMID 24329535 DOI: 10.1111/Imm.12233  1
2014 Mullen L, Adams G, Layward L, Vessillier S, Annenkov A, Mittal G, Rigby A, Sclanders M, Baker D, Gould D, Chernajovsky Y. Latent cytokines for targeted therapy of inflammatory disorders. Expert Opinion On Drug Delivery. 11: 101-10. PMID 24294995 DOI: 10.1517/17425247.2014.863872  1
2014 Al-Izki S, Pryce G, Hankey DJ, Lidster K, von Kutzleben SM, Browne L, Clutterbuck L, Posada C, Edith Chan AW, Amor S, Perkins V, Gerritsen WH, Ummenthum K, Peferoen-Baert R, van der Valk P, ... Baker D, et al. Lesional-targeting of neuroprotection to the inflammatory penumbra in experimental multiple sclerosis. Brain : a Journal of Neurology. 137: 92-108. PMID 24287115 DOI: 10.1093/Brain/Awt324  1
2014 Boissel S, Jarjour J, Astrakhan A, Adey A, Gouble A, Duchateau P, Shendure J, Stoddard BL, Certo MT, Baker D, Scharenberg AM. MegaTALs: A rare-cleaving nuclease architecture for therapeutic genome engineering Nucleic Acids Research. 42: 2591-2601. PMID 24285304 DOI: 10.1093/Nar/Gkt1224  1
2014 Thyme SB, Boissel SJ, Arshiya Quadri S, Nolan T, Baker DA, Park RU, Kusak L, Ashworth J, Baker D. Reprogramming homing endonuclease specificity through computational design and directed evolution. Nucleic Acids Research. 42: 2564-76. PMID 24270794 DOI: 10.1093/Nar/Gkt1212  1
2014 Conway P, Tyka MD, DiMaio F, Konerding DE, Baker D. Relaxation of backbone bond geometry improves protein energy landscape modeling. Protein Science : a Publication of the Protein Society. 23: 47-55. PMID 24265211 DOI: 10.1002/Pro.2389  1
2014 Nivón LG, Bjelic S, King C, Baker D. Automating human intuition for protein design. Proteins. 82: 858-66. PMID 24265170 DOI: 10.1002/Prot.24463  1
2014 Baker DA, Connery AK, Kirk JW, Kirkwood MW. Embedded performance validity indicators within the California Verbal Learning Test, Children's Version. The Clinical Neuropsychologist. 28: 116-27. PMID 24229006 DOI: 10.1080/13854046.2013.858184  1
2014 Bjelic S, Kipnis Y, Wang L, Pianowski Z, Vorobiev S, Su M, Seetharaman J, Xiao R, Kornhaber G, Hunt JF, Tong L, Hilvert D, Baker D. Exploration of alternate catalytic mechanisms and optimization strategies for retroaldolase design. Journal of Molecular Biology. 426: 256-71. PMID 24161950 DOI: 10.1016/J.Jmb.2013.10.012  1
2014 Pryce G, Visintin C, Ramagopalan SV, Al-Izki S, De Faveri LE, Nuamah RA, Mein CA, Montpetit A, Hardcastle AJ, Kooij G, de Vries HE, Amor S, Thomas SA, Ledent C, Marsicano G, ... Baker D, et al. Control of spasticity in a multiple sclerosis model using central nervous system-excluded CB1 cannabinoid receptor agonists. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 28: 117-30. PMID 24121462 DOI: 10.1096/Fj.13-239442  1
2014 Puentes F, Topping J, Kuhle J, van der Star BJ, Douiri A, Giovannoni G, Baker D, Amor S, Malaspina A. Immune reactivity to neurofilament proteins in the clinical staging of amyotrophic lateral sclerosis. Journal of Neurology, Neurosurgery, and Psychiatry. 85: 274-8. PMID 24078718 DOI: 10.1136/Jnnp-2013-305494  1
2014 Mullen L, Rigby A, Sclanders M, Adams G, Mittal G, Colston J, Fatah R, Subang C, Foster J, Francis-West P, Köster M, Hauser H, Layward L, Vessillier S, Annenkov A, ... Baker D, et al. Latency can be conferred to a variety of cytokines by fusion with latency-associated peptide from TGF-β. Expert Opinion On Drug Delivery. 11: 5-16. PMID 24073618 DOI: 10.1517/17425247.2013.839655  1
2014 Shropshire TD, Reifert J, Rajagopalan S, Baker D, Feinstein SC, Daugherty PS. Amyloid β peptide cleavage by kallikrein 7 attenuates fibril growth and rescues neurons from Aβ-mediated toxicity in vitro. Biological Chemistry. 395: 109-18. PMID 23989112 DOI: 10.1515/Hsz-2013-0230  1
2014 Kim DE, Dimaio F, Yu-Ruei Wang R, Song Y, Baker D. One contact for every twelve residues allows robust and accurate topology-level protein structure modeling Proteins: Structure, Function and Bioinformatics. 82: 208-218. PMID 23900763 DOI: 10.1002/Prot.24374  1
2014 Kirkwood MW, Connery AK, Kirk JW, Baker DA. Detecting performance invalidity in children: not quite as easy as A, B, C, 1, 2, 3 but automatized sequences appears promising. Child Neuropsychology : a Journal On Normal and Abnormal Development in Childhood and Adolescence. 20: 245-52. PMID 23297668 DOI: 10.1080/09297049.2012.759553  1
2014 Lutgen V, Kong L, Kau KS, Madayag A, Mantsch JR, Baker DA. Time course of cocaine-induced behavioral and neurochemical plasticity. Addiction Biology. 19: 529-38. PMID 22970924 DOI: 10.1111/J.1369-1600.2012.00493.X  1
2014 Ovchinnikov S, Kamisetty H, Baker D. Author response: Robust and accurate prediction of residue–residue interactions across protein interfaces using evolutionary information Elife. DOI: 10.7554/Elife.02030.014  1
2014 Rossi P, Lange OF, Sgourakis NG, Song Y, Lee H, Aramini JM, Ertekin A, Xiao R, Acton TB, Baker D, Montelione GT. Solution NMR Structure of Maltose-binding protein from Escherichia coli, Northeast Structural Genomics Consortium (NESG) Target ER690 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Mv0/Pdb  1
2014 Pulavarti SVSRK, Kipnis Y, Sukumaran D, Maglaqui M, Janjua H, Mao L, Xiao R, Kornhaber G, Baker D, Montelione GT, Szyperski T. Solution NMR Structure of De novo designed protein, Northeast Structural Genomics Consortium (NESG) Target OR459 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Mra/Pdb  1
2014 Bates AJ, Sadler JP, Grundy D, Lowe N, Davis G, Baker D, Bridge M, Freestone R, Gardner D, Gibson C, Hemming R, Howarth S, Orridge S, Shaw M, Tams T, et al. Model averaged GAMMs of explanatory variable effects for species richness, estimated species richness, total abundance, and index of sample completeness. Plos One. DOI: 10.1371/Journal.Pone.0086925.T003  1
2014 Pulavarti SV, Nivon L, Maglaqui M, Janjua H, Mao L, Xiao R, Kornhaber G, Baker D, Montelione G, Szyperski T. Solution NMR Structure of De novo designed Protein, Northeast Structural Genomics Consortium (NESG) Target OR457 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr25061  1
2014 Pakpoor J, Disanto G, Altmann DR, Pavitt S, Turner B, Calado-Marta M, Juliusson G, Baker D, Chataway J, Schmierer K. Cancer Risk In Multiple Sclerosis Patients Taking Cladribine Journal of Neurology, Neurosurgery, and Psychiatry. 85. DOI: 10.1136/Jnnp-2014-309236.140  1
2014 Krishnan VR, Baker DA. Enhanced collapse resistance of compressed steel pipes Proceedings of the International Conference On Offshore Mechanics and Arctic Engineering - Omae. 5. DOI: 10.1115/OMAE2014-24045  1
2014 Baker DA. Bound to be 'normal': Assistive technology, fair opportunity, and athletic excellence 2014 Ieee International Symposium On Ethics in Science, Technology and Engineering, Ethics 2014. DOI: 10.1109/ETHICS.2014.6893420  1
2014 Dua P, Warnes G, Chruch A, Martino D, Baker D, Giovannoni G, Meier UC. Functional effects of anti-neuronal antibodies from patients with Tourette's syndrome and disorders associated with streptococcal infection Neurology Psychiatry and Brain Research. 20: 17-18. DOI: 10.1016/J.Npbr.2014.01.159  1
2014 Kutzleben SV, Pryce G, Chretien N, Turner M, Siders W, Baker D. Inhibition of relapsing experimental autoimmune encephalomyelitis in Biozzi ABH mice using a mouse CD52-specific monoclonal antibody Journal of Neuroimmunology. 275: 228. DOI: 10.1016/J.Jneuroim.2014.08.611  1
2014 Terwilliger TC, DiMaio F, Read RJ, Baker D, Brunger AT, Adams PD, Afonine PV, Hung L. Combining Crystallographic and Structure-Modeling Approaches in Macromolecular Crystallography Biophysical Journal. 106: 34a. DOI: 10.1016/J.Bpj.2013.11.263  0.01
2014 Lai Y, King NP, Sheffler W, McNamara DE, Bale JB, Baker D, Yeates TO. Symmetry-Based Design and Structure of Self-Assembling Protein Cages and Nanomaterials Biophysical Journal. 106: 445a. DOI: 10.1016/J.Bpj.2013.11.2516  0.01
2014 Kellogg EH, Alushin GM, Lander GC, Baker D, Nogales E. Studying the Structural Origins of Microtubule Dynamic Instability through Combining Computational Modeling and cryoEM Biophysical Journal. 106: 351a. DOI: 10.1016/J.Bpj.2013.11.1996  0.01
2014 Baker DA, Schweitzer NJ, Risko EF. Perceived access to self-relevant information mediates judgments of privacy violations in neuromonitoring and other monitoring technologies Neuroethics. 7: 43-50. DOI: 10.1007/s12152-013-9181-0  1
2014 Obexer R, Studer S, Giger L, Pinkas DM, Grütter MG, Baker D, Hilvert D. Active site plasticity of a computationally designed retro-aldolase enzyme Chemcatchem. 6: 1043-1050. DOI: 10.1002/Cctc.201300933  1
2013 Hampton DW, Serio A, Pryce G, Al-Izki S, Franklin RJ, Giovannoni G, Baker D, Chandran S. Neurodegeneration progresses despite complete elimination of clinical relapses in a mouse model of multiple sclerosis. Acta Neuropathologica Communications. 1: 84. PMID 24364862 DOI: 10.1186/2051-5960-1-84  1
2013 Fang J, Mehlich A, Koga N, Huang J, Koga R, Gao X, Hu C, Jin C, Rief M, Kast J, Baker D, Li H. Forced protein unfolding leads to highly elastic and tough protein hydrogels. Nature Communications. 4: 2974. PMID 24352111 DOI: 10.1038/Ncomms3974  1
2013 Lidster K, Jackson SJ, Ahmed Z, Munro P, Coffey P, Giovannoni G, Baker MD, Baker D. Neuroprotection in a novel mouse model of multiple sclerosis. Plos One. 8: e79188. PMID 24223903 DOI: 10.1371/Journal.Pone.0079188  1
2013 Sisay S, Pryce G, Jackson SJ, Tanner C, Ross RA, Michael GJ, Selwood DL, Giovannoni G, Baker D. Genetic background can result in a marked or minimal effect of gene knockout (GPR55 and CB2 receptor) in experimental autoimmune encephalomyelitis models of multiple sclerosis. Plos One. 8: e76907. PMID 24130809 DOI: 10.1371/Journal.Pone.0076907  1
2013 Wittenberg G, Sheffler W, Darchi D, Baker D, Noy D. Accelerated electron transport from photosystem I to redox partners by covalently linked ferredoxin. Physical Chemistry Chemical Physics : Pccp. 15: 19608-14. PMID 24129892 DOI: 10.1039/C3Cp53264J  1
2013 DiMaio F, Echols N, Headd JJ, Terwilliger TC, Adams PD, Baker D. Improved low-resolution crystallographic refinement with Phenix and Rosetta. Nature Methods. 10: 1102-4. PMID 24076763 DOI: 10.1107/S2053273314092171  1
2013 Puentes F, van der Star BJ, Victor M, Kipp M, Beyer C, Peferoen-Baert R, Ummenthum K, Pryce G, Gerritsen W, Huizinga R, Reijerkerk A, van der Valk P, Baker D, Amor S. Characterization of immune response to neurofilament light in experimental autoimmune encephalomyelitis. Journal of Neuroinflammation. 10: 118. PMID 24053384 DOI: 10.1186/1742-2094-10-118  1
2013 Schweitzer NJ, Baker DA, Risko EF. Fooled by the brain: re-examining the influence of neuroimages. Cognition. 129: 501-11. PMID 24041836 DOI: 10.1016/j.cognition.2013.08.009  1
2013 Cherny I, Greisen P, Ashani Y, Khare SD, Oberdorfer G, Leader H, Baker D, Tawfik DS. Engineering V-type nerve agents detoxifying enzymes using computationally focused libraries. Acs Chemical Biology. 8: 2394-403. PMID 24041203 DOI: 10.1021/Cb4004892  1
2013 Baker DA, Schweitzer NJ, Risko EF, Ware JM. Visual attention and the neuroimage bias. Plos One. 8: e74449. PMID 24040251 DOI: 10.1371/journal.pone.0074449  1
2013 Song Y, DiMaio F, Wang RY, Kim D, Miles C, Brunette T, Thompson J, Baker D. High-resolution comparative modeling with RosettaCM. Structure (London, England : 1993). 21: 1735-42. PMID 24035711 DOI: 10.1016/J.Str.2013.08.005  1
2013 Cooper S, Khatib F, Baker D. Increasing public involvement in structural biology. Structure (London, England : 1993). 21: 1482-4. PMID 24010706 DOI: 10.1016/J.Str.2013.08.009  1
2013 Guy R, El-Hayek C, Fairley CK, Wand H, Carr A, McNulty A, Hoy J, Bourne C, McAllister J, Tee BK, Baker D, Roth N, Stoove M, Chen M. Opt-out and opt-in testing increases syphilis screening of HIV-positive men who have sex with men in Australia. Plos One. 8: e71436. PMID 24009661 DOI: 10.1371/Journal.Pone.0071436  1
2013 Kamisetty H, Ovchinnikov S, Baker D. Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era Proceedings of the National Academy of Sciences of the United States of America. 110: 15674-15679. PMID 24009338 DOI: 10.1073/Pnas.1314045110  1
2013 Tinberg CE, Khare SD, Dou J, Doyle L, Nelson JW, Schena A, Jankowski W, Kalodimos CG, Johnsson K, Stoddard BL, Baker D. Computational design of ligand-binding proteins with high affinity and selectivity. Nature. 501: 212-6. PMID 24005320 DOI: 10.1038/Nature12443  1
2013 Vernon R, Shen Y, Baker D, Lange OF. Improved chemical shift based fragment selection for CS-Rosetta using Rosetta3 fragment picker. Journal of Biomolecular Nmr. 57: 117-27. PMID 23975356 DOI: 10.1007/S10858-013-9772-4  1
2013 Mills JH, Khare SD, Bolduc JM, Forouhar F, Mulligan VK, Lew S, Seetharaman J, Tong L, Stoddard BL, Baker D. Computational design of an unnatural amino acid dependent metalloprotein with atomic level accuracy. Journal of the American Chemical Society. 135: 13393-9. PMID 23924187 DOI: 10.1021/Ja403503M  1
2013 van der Schot G, Zhang Z, Vernon R, Shen Y, Vranken WF, Baker D, Bonvin AM, Lange OF. Improving 3D structure prediction from chemical shift data. Journal of Biomolecular Nmr. 57: 27-35. PMID 23912841 DOI: 10.1007/S10858-013-9762-6  1
2013 Delarasse C, Smith P, Baker D, Amor S. Novel pathogenic epitopes of myelin oligodendrocyte glycoprotein induce experimental autoimmune encephalomyelitis in C57BL/6 mice Immunology. 140: 456-464. PMID 23876060 DOI: 10.1111/Imm.12155  1
2013 Moal IH, Moretti R, Baker D, Fernández-Recio J. Scoring functions for protein-protein interactions. Current Opinion in Structural Biology. 23: 862-7. PMID 23871100 DOI: 10.1016/J.Sbi.2013.06.017  1
2013 Graf EN, Wheeler RA, Baker DA, Ebben AL, Hill JE, McReynolds JR, Robble MA, Vranjkovic O, Wheeler DS, Mantsch JR, Gasser PJ. Corticosterone acts in the nucleus accumbens to enhance dopamine signaling and potentiate reinstatement of cocaine seeking. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 11800-10. PMID 23864669 DOI: 10.1523/Jneurosci.1969-13.2013  1
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