Hongkui Zeng - Publications

Affiliations: 
Allen Institute for Brain Science, Seattle, WA, United States 
Area:
genetics

103 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Su-Feher L, Rubin AN, Silberberg SN, Catta-Preta R, Lim KJ, Ypsilanti AR, Zdilar I, McGinnis CS, McKinsey GL, Rubino TE, Hawrylycz MJ, Thompson C, Gartner ZJ, Puelles L, Zeng H, et al. Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia. Proceedings of the National Academy of Sciences of the United States of America. 119: e2108760119. PMID 35377797 DOI: 10.1073/pnas.2108760119  0.348
2022 Platisa J, Zeng H, Madisen L, Cohen LB, Pieribone VA, Storace DA. Voltage imaging in the olfactory bulb using transgenic mouse lines expressing the genetically encoded voltage indicator ArcLight. Scientific Reports. 12: 1875. PMID 35115567 DOI: 10.1038/s41598-021-04482-3  0.332
2021 Gala R, Budzillo A, Baftizadeh F, Miller J, Gouwens N, Arkhipov A, Murphy G, Tasic B, Zeng H, Hawrylycz M, Sümbül U. Consistent cross-modal identification of cortical neurons with coupled autoencoders. Nature Computational Science. 1: 120-127. PMID 35356158 DOI: 10.1038/s43588-021-00030-1  0.302
2021 Peng H, Xie P, Liu L, Kuang X, Wang Y, Qu L, Gong H, Jiang S, Li A, Ruan Z, Ding L, Yao Z, Chen C, Chen M, Daigle TL, ... ... Zeng H, et al. Morphological diversity of single neurons in molecularly defined cell types. Nature. 598: 174-181. PMID 34616072 DOI: 10.1038/s41586-021-03941-1  0.658
2021 Muñoz-Castañeda R, Zingg B, Matho KS, Chen X, Wang Q, Foster NN, Li A, Narasimhan A, Hirokawa KE, Huo B, Bannerjee S, Korobkova L, Park CS, Park YG, Bienkowski MS, ... ... Zeng H, et al. Cellular anatomy of the mouse primary motor cortex. Nature. 598: 159-166. PMID 34616071 DOI: 10.1038/s41586-021-03970-w  0.32
2021 Berg J, Sorensen SA, Ting JT, Miller JA, Chartrand T, Buchin A, Bakken TE, Budzillo A, Dee N, Ding SL, Gouwens NW, Hodge RD, Kalmbach B, Lee C, Lee BR, ... ... Zeng H, et al. Human neocortical expansion involves glutamatergic neuron diversification. Nature. 598: 151-158. PMID 34616067 DOI: 10.1038/s41586-021-03813-8  0.318
2021 Yao Z, Liu H, Xie F, Fischer S, Adkins RS, Aldridge AI, Ament SA, Bartlett A, Behrens MM, Van den Berge K, Bertagnolli D, de Bézieux HR, Biancalani T, Booeshaghi AS, Bravo HC, ... ... Zeng H, et al. A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex. Nature. 598: 103-110. PMID 34616066 DOI: 10.1038/s41586-021-03500-8  0.661
2021 Zhang M, Eichhorn SW, Zingg B, Yao Z, Cotter K, Zeng H, Dong H, Zhuang X. Spatially resolved cell atlas of the mouse primary motor cortex by MERFISH. Nature. 598: 137-143. PMID 34616063 DOI: 10.1038/s41586-021-03705-x  0.382
2021 Bakken TE, van Velthoven CT, Menon V, Hodge RD, Yao Z, Nguyen TN, Graybuck LT, Horwitz GD, Bertagnolli D, Goldy J, Yanny AM, Garren E, Parry S, Casper T, Shehata SI, ... ... Zeng H, et al. Single-cell and single-nucleus RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates, and humans. Elife. 10. PMID 34473054 DOI: 10.7554/eLife.64875  0.382
2021 Graybuck LT, Daigle TL, Sedeño-Cortés AE, Walker M, Kalmbach B, Lenz GH, Morin E, Nguyen TN, Garren E, Bendrick JL, Kim TK, Zhou T, Mortrud M, Yao S, Siverts LA, ... ... Zeng H, et al. Enhancer viruses for combinatorial cell-subclass-specific labeling. Neuron. PMID 33789083 DOI: 10.1016/j.neuron.2021.03.011  0.403
2020 Vavladeli A, Daigle T, Zeng H, Crochet S, Petersen CCH. Projection-specific Activity of Layer 2/3 Neurons Imaged in Mouse Primary Somatosensory Barrel Cortex During a Whisker Detection Task. Function (Oxford, England). 1: zqaa008. PMID 35330741 DOI: 10.1093/function/zqaa008  0.318
2020 Whitesell JD, Liska A, Coletta L, Hirokawa KE, Bohn P, Williford A, Groblewski PA, Graddis N, Kuan L, Knox JE, Ho A, Wakeman W, Nicovich PR, Nguyen TN, van Velthoven CTJ, ... ... Zeng H, et al. Regional, Layer, and Cell-Type-Specific Connectivity of the Mouse Default Mode Network. Neuron. PMID 33290731 DOI: 10.1016/j.neuron.2020.11.011  0.311
2020 Scala F, Kobak D, Bernabucci M, Bernaerts Y, Cadwell CR, Castro JR, Hartmanis L, Jiang X, Laturnus S, Miranda E, Mulherkar S, Tan ZH, Yao Z, Zeng H, Sandberg R, et al. Phenotypic variation of transcriptomic cell types in mouse motor cortex. Nature. PMID 33184512 DOI: 10.1038/s41586-020-2907-3  0.315
2020 Yuste R, Hawrylycz M, Aalling N, Aguilar-Valles A, Arendt D, Arnedillo RA, Ascoli GA, Bielza C, Bokharaie V, Bergmann TB, Bystron I, Capogna M, Chang Y, Clemens A, de Kock CPJ, ... ... Zeng H, et al. A community-based transcriptomics classification and nomenclature of neocortical cell types. Nature Neuroscience. PMID 32839617 DOI: 10.1038/S41593-020-0685-8  0.367
2020 Veldman MB, Park CS, Eyermann CM, Zhang JY, Zuniga-Sanchez E, Hirano AA, Daigle TL, Foster NN, Zhu M, Langfelder P, Lopez IA, Brecha NC, Zipursky SL, Zeng H, Dong HW, et al. Brainwide Genetic Sparse Cell Labeling to Illuminate the Morphology of Neurons and Glia with Cre-Dependent MORF Mice. Neuron. PMID 32795398 DOI: 10.1016/J.Neuron.2020.07.019  0.478
2020 Ding SL, Yao Z, Hirokawa KE, Nguyen TN, Graybuck LT, Fong O, Bohn P, Ngo K, Smith KA, Koch C, Phillips JW, Lein ES, Harris JA, Tasic B, Zeng H. Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis. Cell Reports. 31: 107648. PMID 32433957 DOI: 10.1016/J.Celrep.2020.107648  0.33
2020 Wang Q, Ding SL, Li Y, Royall J, Feng D, Lesnar P, Graddis N, Naeemi M, Facer B, Ho A, Dolbeare T, Blanchard B, Dee N, Wakeman W, Hirokawa KE, ... ... Zeng H, et al. The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas. Cell. PMID 32386544 DOI: 10.1016/J.Cell.2020.04.007  0.34
2020 Ahmadzadeh E, Bayin NS, Qu X, Singh A, Madisen L, Stephen D, Zeng H, Joyner AL, Rosello-Diez A. A collection of genetic mouse lines and related tools for inducible and reversible intersectional misexpression. Development (Cambridge, England). PMID 32366677 DOI: 10.1242/Dev.186650  0.394
2020 Yao S, Yuan P, Ouellette B, Zhou T, Mortrud M, Balaram P, Chatterjee S, Wang Y, Daigle TL, Tasic B, Kuang X, Gong H, Luo Q, Zeng S, Curtright A, ... ... Zeng H, et al. RecV recombinase system for in vivo targeted optogenomic modifications of single cells or cell populations. Nature Methods. PMID 32203389 DOI: 10.1038/S41592-020-0774-3  0.457
2019 de Vries SEJ, Lecoq JA, Buice MA, Groblewski PA, Ocker GK, Oliver M, Feng D, Cain N, Ledochowitsch P, Millman D, Roll K, Garrett M, Keenan T, Kuan L, Mihalas S, ... ... Zeng H, et al. A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex. Nature Neuroscience. PMID 31844315 DOI: 10.1038/S41593-019-0550-9  0.366
2019 Bai L, Mesgarzadeh S, Ramesh KS, Huey EL, Liu Y, Gray LA, Aitken TJ, Chen Y, Beutler LR, Ahn JS, Madisen L, Zeng H, Krasnow MA, Knight ZA. Genetic Identification of Vagal Sensory Neurons That Control Feeding. Cell. 179: 1129-1143.e23. PMID 31730854 DOI: 10.1016/J.Cell.2019.10.031  0.379
2019 Smith SJ, Sümbül U, Graybuck LT, Collman F, Seshamani S, Gala R, Gliko O, Elabbady L, Miller JA, Bakken TE, Rossier J, Yao Z, Lein E, Zeng H, Tasic B, et al. Single-cell transcriptomic evidence for dense intracortical neuropeptide networks. Elife. 8. PMID 31710287 DOI: 10.7554/Elife.47889  0.399
2019 Harris JA, Mihalas S, Hirokawa KE, Whitesell JD, Choi H, Bernard A, Bohn P, Caldejon S, Casal L, Cho A, Feiner A, Feng D, Gaudreault N, Gerfen CR, Graddis N, ... ... Zeng H, et al. Hierarchical organization of cortical and thalamic connectivity. Nature. PMID 31666704 DOI: 10.1038/S41586-019-1716-Z  0.41
2019 Zhang T, Hernandez O, Chrapkiewicz R, Shai A, Wagner MJ, Zhang Y, Wu CH, Li JZ, Inoue M, Gong Y, Ahanonu B, Zeng H, Bito H, Schnitzer MJ. Kilohertz two-photon brain imaging in awake mice. Nature Methods. PMID 31659327 DOI: 10.1038/S41592-019-0597-2  0.37
2019 Kim DW, Yao Z, Graybuck LT, Kim TK, Nguyen TN, Smith KA, Fong O, Yi L, Koulena N, Pierson N, Shah S, Lo L, Pool AH, Oka Y, Pachter L, ... ... Zeng H, et al. Multimodal Analysis of Cell Types in a Hypothalamic Node Controlling Social Behavior. Cell. 179: 713-728.e17. PMID 31626771 DOI: 10.1016/J.Cell.2019.09.020  0.374
2019 Gribizis A, Ge X, Daigle TL, Ackman JB, Zeng H, Lee D, Crair MC. Visual Cortex Gains Independence from Peripheral Drive before Eye Opening. Neuron. PMID 31561919 DOI: 10.1016/J.Neuron.2019.08.015  0.361
2019 Hodge RD, Bakken TE, Miller JA, Smith KA, Barkan ER, Graybuck LT, Close JL, Long B, Johansen N, Penn O, Yao Z, Eggermont J, Höllt T, Levi BP, Shehata SI, ... ... Zeng H, et al. Conserved cell types with divergent features in human versus mouse cortex. Nature. PMID 31435019 DOI: 10.1038/S41586-019-1506-7  0.395
2019 Wang Y, Li Q, Liu L, Zhou Z, Ruan Z, Kong L, Li Y, Wang Y, Zhong N, Chai R, Luo X, Guo Y, Hawrylycz M, Luo Q, Gu Z, ... ... Zeng H, et al. TeraVR empowers precise reconstruction of complete 3-D neuronal morphology in the whole brain. Nature Communications. 10: 3474. PMID 31375678 DOI: 10.1038/S41467-019-11443-Y  0.414
2019 Gouwens NW, Sorensen SA, Berg J, Lee C, Jarsky T, Ting J, Sunkin SM, Feng D, Anastassiou CA, Barkan E, Bickley K, Blesie N, Braun T, Brouner K, Budzillo A, ... ... Zeng H, et al. Classification of electrophysiological and morphological neuron types in the mouse visual cortex. Nature Neuroscience. PMID 31209381 DOI: 10.1038/S41593-019-0417-0  0.465
2019 Knoblich U, Huang L, Zeng H, Li L. Neuronal cell-subtype specificity of neural synchronization in mouse primary visual cortex. Nature Communications. 10: 2533. PMID 31182715 DOI: 10.1038/S41467-019-10498-1  0.457
2019 Adam Y, Kim JJ, Lou S, Zhao Y, Xie ME, Brinks D, Wu H, Mostajo-Radji MA, Kheifets S, Parot V, Chettih S, Williams KJ, Gmeiner B, Farhi SL, Madisen L, ... ... Zeng H, et al. Voltage imaging and optogenetics reveal behaviour-dependent changes in hippocampal dynamics. Nature. PMID 31043747 DOI: 10.1038/S41586-019-1166-7  0.441
2019 Weisenburger S, Tejera F, Demas J, Chen B, Manley J, Sparks FT, Martínez Traub F, Daigle T, Zeng H, Losonczy A, Vaziri A. Volumetric Ca Imaging in the Mouse Brain Using Hybrid Multiplexed Sculpted Light Microscopy. Cell. PMID 30982596 DOI: 10.1016/J.Cell.2019.03.011  0.42
2019 Holst G, Stoy WA, Yang B, Kolb I, Kodandaramaiah SB, Li L, Knoblich U, Zeng H, Haider B, Boyden ES, Forest CR. Autonomous patch clamp robot for functional characterization of neurons in vivo: development and application to mouse visual cortex. Journal of Neurophysiology. PMID 30969898 DOI: 10.1152/Jn.00738.2018  0.39
2019 Zimmerman CA, Huey EL, Ahn JS, Beutler LR, Tan CL, Kosar S, Bai L, Chen Y, Corpuz TV, Madisen L, Zeng H, Knight ZA. A gut-to-brain signal of fluid osmolarity controls thirst satiation. Nature. PMID 30918408 DOI: 10.1038/S41586-019-1066-X  0.332
2019 Lo L, Yao S, Kim DW, Cetin A, Harris J, Zeng H, Anderson DJ, Weissbourd B. Connectional architecture of a mouse hypothalamic circuit node controlling social behavior. Proceedings of the National Academy of Sciences of the United States of America. PMID 30898882 DOI: 10.1073/Pnas.1817503116  0.416
2019 Chen IW, Ronzitti E, Lee BR, Daigle TL, Dalkara D, Zeng H, Emiliani V, Papagiakoumou E. sub-millisecond two-photon optogenetics with temporally focused patterned light. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 30833505 DOI: 10.1523/Jneurosci.1785-18.2018  0.465
2019 Yetman MJ, Washburn E, Hyun JH, Osakada F, Hayano Y, Zeng H, Callaway EM, Kwon HB, Taniguchi H. Intersectional monosynaptic tracing for dissecting subtype-specific organization of GABAergic interneuron inputs. Nature Neuroscience. PMID 30692688 DOI: 10.1038/S41593-018-0322-Y  0.387
2018 Bakken TE, Hodge RD, Miller JA, Yao Z, Nguyen TN, Aevermann B, Barkan E, Bertagnolli D, Casper T, Dee N, Garren E, Goldy J, Graybuck LT, Kroll M, Lasken RS, ... ... Zeng H, et al. Single-nucleus and single-cell transcriptomes compared in matched cortical cell types. Plos One. 13: e0209648. PMID 30586455 DOI: 10.1371/Journal.Pone.0209648  0.394
2018 Economo MN, Viswanathan S, Tasic B, Bas E, Winnubst J, Menon V, Graybuck LT, Nguyen TN, Smith KA, Yao Z, Wang L, Gerfen CR, Chandrashekar J, Zeng H, Looger LL, et al. Distinct descending motor cortex pathways and their roles in movement. Nature. 563: 79-84. PMID 30382200 DOI: 10.1038/S41586-018-0642-9  0.338
2018 Tasic B, Yao Z, Graybuck LT, Smith KA, Nguyen TN, Bertagnolli D, Goldy J, Garren E, Economo MN, Viswanathan S, Penn O, Bakken T, Menon V, Miller J, Fong O, ... ... Zeng H, et al. Shared and distinct transcriptomic cell types across neocortical areas. Nature. 563: 72-78. PMID 30382198 DOI: 10.1038/S41586-018-0654-5  0.423
2018 Seeman SC, Campagnola L, Davoudian PA, Hoggarth A, Hage TA, Bosma-Moody A, Baker CA, Lee JH, Mihalas S, Teeter C, Ko AL, Ojemann JG, Gwinn RP, Silbergeld DL, Cobbs C, ... ... Zeng H, et al. Sparse recurrent excitatory connectivity in the microcircuit of the adult mouse and human cortex. Elife. 7. PMID 30256194 DOI: 10.7554/Elife.37349  0.404
2018 Beumer J, Artegiani B, Post Y, Reimann F, Gribble F, Nguyen TN, Zeng H, Van den Born M, Van Es JH, Clevers H. Enteroendocrine cells switch hormone expression along the crypt-to-villus BMP signalling gradient. Nature Cell Biology. PMID 30038251 DOI: 10.1038/S41556-018-0143-Y  0.323
2018 Daigle TL, Madisen L, Hage TA, Valley MT, Knoblich U, Larsen RS, Takeno MM, Huang L, Gu H, Larsen R, Mills M, Bosma-Moody A, Siverts LA, Walker M, Graybuck LT, ... ... Zeng H, et al. A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality. Cell. 174: 465-480.e22. PMID 30007418 DOI: 10.1016/J.Cell.2018.06.035  0.447
2018 Ting JT, Lee BR, Chong P, Soler-Llavina G, Cobbs C, Koch C, Zeng H, Lein E. Preparation of Acute Brain Slices Using an Optimized N-Methyl-D-glucamine Protective Recovery Method. Journal of Visualized Experiments : Jove. PMID 29553547 DOI: 10.3791/53825  0.368
2018 Chatterjee S, Sullivan HA, MacLennan BJ, Xu R, Hou Y, Lavin TK, Lea NE, Michalski JE, Babcock KR, Dietrich S, Matthews GA, Beyeler A, Calhoon GG, Glober G, Whitesell JD, ... ... Zeng H, et al. Nontoxic, double-deletion-mutant rabies viral vectors for retrograde targeting of projection neurons. Nature Neuroscience. PMID 29507411 DOI: 10.1038/S41593-018-0091-7  0.452
2018 Teeter C, Iyer R, Menon V, Gouwens N, Feng D, Berg J, Szafer A, Cain N, Zeng H, Hawrylycz M, Koch C, Mihalas S. Generalized leaky integrate-and-fire models classify multiple neuron types. Nature Communications. 9: 709. PMID 29459723 DOI: 10.1038/S41467-017-02717-4  0.379
2018 Gouwens NW, Berg J, Feng D, Sorensen SA, Zeng H, Hawrylycz MJ, Koch C, Arkhipov A. Systematic generation of biophysically detailed models for diverse cortical neuron types. Nature Communications. 9: 710. PMID 29459718 DOI: 10.1038/S41467-017-02718-3  0.393
2017 Li X, Yu B, Sun Q, Zhang Y, Ren M, Zhang X, Li A, Yuan J, Madisen L, Luo Q, Zeng H, Gong H, Qiu Z. Generation of a whole-brain atlas for the cholinergic system and mesoscopic projectome analysis of basal forebrain cholinergic neurons. Proceedings of the National Academy of Sciences of the United States of America. PMID 29259118 DOI: 10.1073/Pnas.1703601115  0.432
2017 Ecker JR, Geschwind DH, Kriegstein AR, Ngai J, Osten P, Polioudakis D, Regev A, Sestan N, Wickersham IR, Zeng H. The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas. Neuron. 96: 542-557. PMID 29096072 DOI: 10.1016/J.Neuron.2017.10.007  0.419
2017 Hsiang JC, Johnson K, Madisen L, Zeng H, Kerschensteiner D. Local processing in neurites of VGluT3-expressing amacrine cells differentially organizes visual information. Elife. 6. PMID 29022876 DOI: 10.7554/Elife.31307  0.377
2017 Steinmetz NA, Buetfering C, Lecoq J, Lee CR, Peters AJ, Jacobs EAK, Coen P, Ollerenshaw DR, Valley MT, de Vries SEJ, Garrett M, Zhuang J, Groblewski PA, Manavi S, Miles J, ... ... Zeng H, et al. Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines. Eneuro. 4. PMID 28932809 DOI: 10.1523/ENEURO.0207-17.2017  0.321
2017 Long B, Zhou Z, Cetin A, Ting J, Gwinn R, Tasic B, Daigle T, Lein E, Zeng H, Saggau P, Hawrylycz M, Peng H. SmartScope2: Simultaneous Imaging and Reconstruction of Neuronal Morphology. Scientific Reports. 7: 9325. PMID 28839271 DOI: 10.1038/S41598-017-10067-W  0.39
2017 Zeng H, Sanes JR. Neuronal cell-type classification: challenges, opportunities and the path forward. Nature Reviews. Neuroscience. PMID 28775344 DOI: 10.1038/Nrn.2017.85  0.431
2017 Bethge P, Carta S, Lorenzo DA, Egolf L, Goniotaki D, Madisen L, Voigt FF, Chen JL, Schneider B, Ohkura M, Nakai J, Zeng H, Aguzzi A, Helmchen F. An R-CaMP1.07 reporter mouse for cell-type-specific expression of a sensitive red fluorescent calcium indicator. Plos One. 12: e0179460. PMID 28640817 DOI: 10.1371/Journal.Pone.0179460  0.442
2017 Li L, Ouellette B, Stoy WA, Garren EJ, Daigle TL, Forest CR, Koch C, Zeng H. A robot for high yield electrophysiology and morphology of single neurons in vivo. Nature Communications. 8: 15604. PMID 28569837 DOI: 10.1038/Ncomms15604  0.412
2017 Chung S, Weber F, Zhong P, Tan CL, Nguyen TN, Beier KT, Hörmann N, Chang WC, Zhang Z, Do JP, Yao S, Krashes MJ, Tasic B, Cetin A, Zeng H, et al. Identification of preoptic sleep neurons using retrograde labelling and gene profiling. Nature. PMID 28514446 DOI: 10.1038/Nature22350  0.314
2017 Quina LA, Harris J, Zeng H, Turner EE. Specific connections of the interpeduncular subnuclei reveal distinct components of the habenulopeduncular pathway. The Journal of Comparative Neurology. PMID 28387937 DOI: 10.1002/Cne.24221  0.321
2017 Martersteck EM, Hirokawa KE, Evarts M, Bernard A, Duan X, Li Y, Ng L, Oh SW, Ouellette B, Royall JJ, Stoecklin M, Wang Q, Zeng H, Sanes JR, Harris JA. Diverse Central Projection Patterns of Retinal Ganglion Cells. Cell Reports. 18: 2058-2072. PMID 28228269 DOI: 10.1016/J.Celrep.2017.01.075  0.374
2017 Gray LT, Yao Z, Nguyen TN, Kim TK, Zeng H, Tasic B. Layer-specific chromatin accessibility landscapes reveal regulatory networks in adult mouse visual cortex. Elife. 6. PMID 28112643 DOI: 10.7554/Elife.21883  0.352
2017 Hsiang J, Johnson KP, Madisen L, Zeng H, Kerschensteiner D. Author response: Local processing in neurites of VGluT3-expressing amacrine cells differentially organizes visual information Elife. DOI: 10.7554/Elife.31307.018  0.302
2016 Kim TH, Zhang Y, Lecoq J, Jung JC, Li J, Zeng H, Niell CM, Schnitzer MJ. Long-Term Optical Access to an Estimated One Million Neurons in the Live Mouse Cortex. Cell Reports. 17: 3385-3394. PMID 28009304 DOI: 10.1016/J.Celrep.2016.12.004  0.45
2016 Chaigneau E, Ronzitti E, Gajowa MA, Soler-Llavina GJ, Tanese D, Brureau AY, Papagiakoumou E, Zeng H, Emiliani V. Two-Photon Holographic Stimulation of ReaChR. Frontiers in Cellular Neuroscience. 10: 234. PMID 27803649 DOI: 10.3389/Fncel.2016.00234  0.386
2016 Lou S, Adam Y, Weinstein EN, Williams E, Williams K, Parot V, Kavokine N, Liberles S, Madisen L, Zeng H, Cohen AE. Genetically Targeted All-Optical Electrophysiology with a Transgenic Cre-Dependent Optopatch Mouse. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 36: 11059-11073. PMID 27798186 DOI: 10.1523/Jneurosci.1582-16.2016  0.441
2016 Silberberg SN, Taher L, Lindtner S, Sandberg M, Nord AS, Vogt D, Mckinsey GL, Hoch R, Pattabiraman K, Zhang D, Ferran JL, Rajkovic A, Golonzhka O, Kim C, Zeng H, et al. Subpallial Enhancer Transgenic Lines: a Data and Tool Resource to Study Transcriptional Regulation of GABAergic Cell Fate. Neuron. 92: 59-74. PMID 27710791 DOI: 10.1016/J.Neuron.2016.09.027  0.368
2016 Wu Q, Kolb I, Callahan BM, Su Z, Stoy W, Kodandaramaiah SB, Neve RL, Zeng H, Boyden ES, Forest CR, Chubykin AA. Integration of autopatching with automated pipette and cell detection in vitro. Journal of Neurophysiology. jn.00386.2016. PMID 27385800 DOI: 10.1152/Jn.00386.2016  0.45
2016 Hawrylycz M, Anastassiou C, Arkhipov A, Berg J, Buice M, Cain N, Gouwens NW, Gratiy S, Iyer R, Lee JH, Mihalas S, Mitelut C, Olsen S, Reid RC, Teeter C, ... ... Zeng H, et al. Inferring cortical function in the mouse visual system through large-scale systems neuroscience. Proceedings of the National Academy of Sciences of the United States of America. 113: 7337-44. PMID 27382147 DOI: 10.1073/Pnas.1512901113  0.405
2016 Wang Q, Ng L, Harris JA, Feng D, Li Y, Royall JJ, Wook Oh S, Bernard A, Sunkin SM, Koch C, Zeng H. Organization of the connections between claustrum and cortex in the mouse. The Journal of Comparative Neurology. PMID 27223051 DOI: 10.1002/Cne.24047  0.303
2016 Xie Y, Chan AW, McGirr A, Xue S, Xiao D, Zeng H, Murphy TH. Resolution of High-Frequency Mesoscale Intracortical Maps Using the Genetically Encoded Glutamate Sensor iGluSnFR. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 36: 1261-72. PMID 26818514 DOI: 10.1523/Jneurosci.2744-15.2016  0.362
2016 Tasic B, Menon V, Nguyen TN, Kim TK, Jarsky T, Yao Z, Levi B, Gray LT, Sorensen SA, Dolbeare T, Bertagnolli D, Goldy J, Shapovalova N, Parry S, Lee C, ... ... Zeng H, et al. Adult mouse cortical cell taxonomy revealed by single cell transcriptomics. Nature Neuroscience. PMID 26727548 DOI: 10.1038/Nn.4216  0.434
2015 Long B, Li L, Knoblich U, Zeng H, Peng H. 3D Image-Guided Automatic Pipette Positioning for Single Cell Experiments in vivo. Scientific Reports. 5: 18426. PMID 26689553 DOI: 10.1038/Srep18426  0.338
2015 Empson RM, Goulton C, Scholtz D, Gallero-Salas Y, Zeng H, Knöpfel T. Validation of optical voltage reporting by the genetically encoded voltage indicator VSFP-Butterfly from cortical layer 2/3 pyramidal neurons in mouse brain slices. Physiological Reports. 3. PMID 26229003 DOI: 10.14814/Phy2.12468  0.446
2015 Gil-Sanz C, Espinosa A, Fregoso SP, Bluske KK, Cunningham CL, Martinez-Garay I, Zeng H, Franco SJ, Müller U. Lineage Tracing Using Cux2-Cre and Cux2-CreERT2 Mice. Neuron. 86: 1091-9. PMID 25996136 DOI: 10.1016/J.Neuron.2015.04.019  0.381
2015 Srinivasan R, Huang BS, Venugopal S, Johnston AD, Chai H, Zeng H, Golshani P, Khakh BS. Ca(2+) signaling in astrocytes from Ip3r2(-/-) mice in brain slices and during startle responses in vivo. Nature Neuroscience. 18: 708-17. PMID 25894291 DOI: 10.1038/Nn.4001  0.323
2015 Madisen L, Garner AR, Shimaoka D, Chuong AS, Klapoetke NC, Li L, van der Bourg A, Niino Y, Egolf L, Monetti C, Gu H, Mills M, Cheng A, Tasic B, Nguyen TN, ... ... Zeng H, et al. Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance. Neuron. 85: 942-58. PMID 25741722 DOI: 10.1016/J.Neuron.2015.02.022  0.433
2015 Fan J, Zeng H, Olson DP, Huber KM, Gibson JR, Takahashi JS. Vasoactive intestinal polypeptide (VIP)-expressing neurons in the suprachiasmatic nucleus provide sparse GABAergic outputs to local neurons with circadian regulation occurring distal to the opening of postsynaptic GABAA ionotropic receptors. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 35: 1905-20. PMID 25653351 DOI: 10.1523/Jneurosci.2661-14.2015  0.403
2015 Kuan L, Li Y, Lau C, Feng D, Bernard A, Sunkin SM, Zeng H, Dang C, Hawrylycz M, Ng L. Neuroinformatics of the Allen Mouse Brain Connectivity Atlas. Methods (San Diego, Calif.). 73: 4-17. PMID 25536338 DOI: 10.1016/J.Ymeth.2014.12.013  0.339
2015 Zhou Z, Sorensen S, Zeng H, Hawrylycz M, Peng H. Adaptive Image Enhancement for Tracing 3D Morphologies of Neurons and Brain Vasculatures. Neuroinformatics. 13: 153-66. PMID 25310965 DOI: 10.1007/S12021-014-9249-Y  0.383
2015 Sorensen SA, Bernard A, Menon V, Royall JJ, Glattfelder KJ, Desta T, Hirokawa K, Mortrud M, Miller JA, Zeng H, Hohmann JG, Jones AR, Lein ES. Correlated gene expression and target specificity demonstrate excitatory projection neuron diversity. Cerebral Cortex (New York, N.Y. : 1991). 25: 433-49. PMID 24014670 DOI: 10.1093/Cercor/Bht243  0.419
2014 Pieraut S, Gounko N, Sando R, Dang W, Rebboah E, Panda S, Madisen L, Zeng H, Maximov A. Experience-dependent remodeling of basket cell networks in the dentate gyrus. Neuron. 84: 107-22. PMID 25277456 DOI: 10.1016/J.Neuron.2014.09.012  0.372
2014 Harris JA, Hirokawa KE, Sorensen SA, Gu H, Mills M, Ng LL, Bohn P, Mortrud M, Ouellette B, Kidney J, Smith KA, Dang C, Sunkin S, Bernard A, Oh SW, ... ... Zeng H, et al. Anatomical characterization of Cre driver mice for neural circuit mapping and manipulation. Frontiers in Neural Circuits. 8: 76. PMID 25071457 DOI: 10.3389/Fncir.2014.00076  0.454
2014 Pattabiraman K, Golonzhka O, Lindtner S, Nord AS, Taher L, Hoch R, Silberberg SN, Zhang D, Chen B, Zeng H, Pennacchio LA, Puelles L, Visel A, Rubenstein JL. Transcriptional regulation of enhancers active in protodomains of the developing cerebral cortex. Neuron. 82: 989-1003. PMID 24814534 DOI: 10.1016/J.Neuron.2014.04.014  0.354
2014 Lee H, Kim DW, Remedios R, Anthony TE, Chang A, Madisen L, Zeng H, Anderson DJ. Scalable control of mounting and attack by Esr1+ neurons in the ventromedial hypothalamus. Nature. 509: 627-32. PMID 24739975 DOI: 10.1038/Nature13169  0.368
2014 Oh SW, Harris JA, Ng L, Winslow B, Cain N, Mihalas S, Wang Q, Lau C, Kuan L, Henry AM, Mortrud MT, Ouellette B, Nguyen TN, Sorensen SA, Slaughterbeck CR, ... ... Zeng H, et al. A mesoscale connectome of the mouse brain. Nature. 508: 207-14. PMID 24695228 DOI: 10.1038/Nature13186  0.369
2014 Wang Q, Henry AM, Harris JA, Oh SW, Joines KM, Nyhus J, Hirokawa KE, Dee N, Mortrud M, Parry S, Ouellette B, Caldejon S, Bernard A, Jones AR, Zeng H, et al. Systematic comparison of adeno-associated virus and biotinylated dextran amine reveals equivalent sensitivity between tracers and novel projection targets in the mouse brain. The Journal of Comparative Neurology. 522: 1989-2012. PMID 24639291 DOI: 10.1002/Cne.23567  0.426
2014 Guillozet-Bongaarts AL, Hyde TM, Dalley RA, Hawrylycz MJ, Henry A, Hof PR, Hohmann J, Jones AR, Kuan CL, Royall J, Shen E, Swanson B, Zeng H, Kleinman JE. Altered gene expression in the dorsolateral prefrontal cortex of individuals with schizophrenia. Molecular Psychiatry. 19: 478-85. PMID 23528911 DOI: 10.1038/Mp.2013.30  0.351
2013 Hsu YW, Tempest L, Quina LA, Wei AD, Zeng H, Turner EE. Medial habenula output circuit mediated by α5 nicotinic receptor-expressing GABAergic neurons in the interpeduncular nucleus. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 18022-35. PMID 24227714 DOI: 10.1523/Jneurosci.2927-13.2013  0.408
2013 Haddad R, Lanjuin A, Madisen L, Zeng H, Murthy VN, Uchida N. Olfactory cortical neurons read out a relative time code in the olfactory bulb. Nature Neuroscience. 16: 949-57. PMID 23685720 DOI: 10.1038/Nn.3407  0.37
2013 Huang ZJ, Zeng H. Genetic approaches to neural circuits in the mouse. Annual Review of Neuroscience. 36: 183-215. PMID 23682658 DOI: 10.1146/Annurev-Neuro-062012-170307  0.645
2013 Turner EE, Hsu YW, Wang S, Morton G, Zeng H. A combinatorial optogenetic approach to medial habenula function Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8586. DOI: 10.1117/12.2010309  0.397
2012 Zeng H, Shen EH, Hohmann JG, Oh SW, Bernard A, Royall JJ, Glattfelder KJ, Sunkin SM, Morris JA, Guillozet-Bongaarts AL, Smith KA, Ebbert AJ, Swanson B, Kuan L, Page DT, et al. Large-scale cellular-resolution gene profiling in human neocortex reveals species-specific molecular signatures. Cell. 149: 483-96. PMID 22500809 DOI: 10.1016/J.Cell.2012.02.052  0.371
2012 Harris JA, Oh SW, Zeng H. Adeno-associated viral vectors for anterograde axonal tracing with fluorescent proteins in nontransgenic and cre driver mice. Current Protocols in Neuroscience / Editorial Board, Jacqueline N. Crawley ... [Et Al.]. Unit 1.20.1-18. PMID 22470147 DOI: 10.1002/0471142301.Ns0120S59  0.419
2012 Madisen L, Mao T, Koch H, Zhuo JM, Berenyi A, Fujisawa S, Hsu YW, Garcia AJ, Gu X, Zanella S, Kidney J, Gu H, Mao Y, Hooks BM, Boyden ES, ... ... Zeng H, et al. A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing. Nature Neuroscience. 15: 793-802. PMID 22446880 DOI: 10.1038/Nn.3078  0.454
2012 Zariwala HA, Borghuis BG, Hoogland TM, Madisen L, Tian L, De Zeeuw CI, Zeng H, Looger LL, Svoboda K, Chen TW. A Cre-dependent GCaMP3 reporter mouse for neuronal imaging in vivo. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 3131-41. PMID 22378886 DOI: 10.1523/Jneurosci.4469-11.2012  0.774
2011 Hofer SB, Ko H, Pichler B, Vogelstein J, Ros H, Zeng H, Lein E, Lesica NA, Mrsic-Flogel TD. Differential connectivity and response dynamics of excitatory and inhibitory neurons in visual cortex. Nature Neuroscience. 14: 1045-52. PMID 21765421 DOI: 10.1038/Nn.2876  0.429
2011 Zariwala HA, Madisen L, Ahrens KF, Bernard A, Lein ES, Jones AR, Zeng H. Visual tuning properties of genetically identified layer 2/3 neuronal types in the primary visual cortex of cre-transgenic mice. Frontiers in Systems Neuroscience. 4: 162. PMID 21283555 DOI: 10.3389/Fnsys.2010.00162  0.781
2010 Madisen L, Zwingman TA, Sunkin SM, Oh SW, Zariwala HA, Gu H, Ng LL, Palmiter RD, Hawrylycz MJ, Jones AR, Lein ES, Zeng H. A robust and high-throughput Cre reporting and characterization system for the whole mouse brain. Nature Neuroscience. 13: 133-40. PMID 20023653 DOI: 10.1038/Nn.2467  0.735
2008 Zeng H, Horie K, Madisen L, Pavlova MN, Gragerova G, Rohde AD, Schimpf BA, Liang Y, Ojala E, Kramer F, Roth P, Slobodskaya O, Dolka I, Southon EA, Tessarollo L, et al. An inducible and reversible mouse genetic rescue system. Plos Genetics. 4: e1000069. PMID 18464897 DOI: 10.1371/Journal.Pgen.1000069  0.38
2007 Gragerov A, Horie K, Pavlova M, Madisen L, Zeng H, Gragerova G, Rhode A, Dolka I, Roth P, Ebbert A, Moe S, Navas C, Finn E, Bergmann J, Vassilatis DK, et al. Large-scale, saturating insertional mutagenesis of the mouse genome. Proceedings of the National Academy of Sciences of the United States of America. 104: 14406-11. PMID 17720809 DOI: 10.1073/Pnas.0700608104  0.316
2006 Zeng H, Gragerov A, Hohmann JG, Pavlova MN, Schimpf BA, Xu H, Wu LJ, Toyoda H, Zhao MG, Rohde AD, Gragerova G, Onrust R, Bergmann JE, Zhuo M, Gaitanaris GA. Neuromedin U receptor 2-deficient mice display differential responses in sensory perception, stress, and feeding. Molecular and Cellular Biology. 26: 9352-63. PMID 17030627 DOI: 10.1128/Mcb.01148-06  0.333
2005 Gottsch ML, Zeng H, Hohmann JG, Weinshenker D, Clifton DK, Steiner RA. Phenotypic analysis of mice deficient in the type 2 galanin receptor (GALR2). Molecular and Cellular Biology. 25: 4804-11. PMID 15899880 DOI: 10.1128/Mcb.25.11.4804-4811.2005  0.324
2003 Miyakawa T, Leiter LM, Gerber DJ, Gainetdinov RR, Sotnikova TD, Zeng H, Caron MG, Tonegawa S. Conditional calcineurin knockout mice exhibit multiple abnormal behaviors related to schizophrenia. Proceedings of the National Academy of Sciences of the United States of America. 100: 8987-92. PMID 12851457 DOI: 10.1073/Pnas.1432926100  0.508
2001 Zeng H, Chattarji S, Barbarosie M, Rondi-Reig L, Philpot BD, Miyakawa T, Bear MF, Tonegawa S. Forebrain-specific calcineurin knockout selectively impairs bidirectional synaptic plasticity and working/episodic-like memory. Cell. 107: 617-29. PMID 11733061 DOI: 10.1016/S0092-8674(01)00585-2  0.685
1994 Zeng H, Hardin PE, Rosbash M. Constitutive overexpression of the Drosophila period protein inhibits period mRNA cycling. The Embo Journal. 13: 3590-8. PMID 8062834 DOI: 10.1002/J.1460-2075.1994.Tb06666.X  0.33
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